Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8019708.1

Orthogroup ID

OG0002228

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 480

Gene Structure 480 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8019708.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

agttttcagtcgtttaaatatacagtatggtcattctttacttactgtttttgtgcttgggtcacaaggcatggctatggaagatggcaagctattgttgacgacaaggacctggggattcaagaagttatttgtcaagagttgaaccttcctttcccagggcaggttaaagcacaaaatggagcacatgctaatactgaagcacctggtaacgccgctggaaatggtaatgggaatgacgtaggagaaaatgtagctcagggaaccattgatccagtaaaccagcctcaatcatatccagagtcttctacgtcgcattattcaagagatatgcaaagaagattggtagaatttatcaagcgaagagtgcttctcttggaggatggcaacaataaagaagcccagaaagaatactacgtaagtttataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006338 GO:0006355 GO:0006996 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008283 GO:0009719 GO:0009725 GO:0009733 GO:0009735 GO:0009736 GO:0009739 GO:0009755 GO:0009787 GO:0009788 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010646 GO:0010648 GO:0016043 GO:0019219 GO:0019222 GO:0022622 GO:0023051 GO:0023052 GO:0023057 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048364 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051239 GO:0051252 GO:0051253 GO:0051276 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0071840 GO:0080090 GO:0097159 GO:0099402 GO:1901363 GO:1901419 GO:1901420 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:1905957 GO:1905958 GO:2000023 GO:2000026 GO:2000069 GO:2000112 GO:2000113 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko05165 ko05203 map05165 map05203

Pfam Domains

Protein Families

CHDCT2 Chromo DUF1086 DUF1087 Helicase_C PHD SNF2_N

Protein Analysis

142

Amino Acids

16.03

Weight (kDa)

5.56

Isoelectric Point (pI)

38.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002228)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25170 AT2G25170 AT2G25170 AT2G25170 AT4G31900 AT4G31900 AT4G31900
fragaria_vesca	FvH4_2g40920
malus_domestica	MD08G1058800.v1.1 MD15G1037700.v1.1
prunus_persica	Prupe.1G391600_v2.0.a1
pyrus_communis	pycom08g04860 pycom08g04870 pycom15g03490
rosa_chinensis	RchiOBHm_Chr3g0455421 RchiOBHm_Chr6g0299661
rosa_laevigata	RLG00000011399 RLG00000025364
rosa_multiflora	Rmu_co8019708.1_g000001 Rmu_co8099568.1_g000001 Rmu_sc0022216.1_g000002 Rmu_sc0024261.1_g000001 Rmu_sc0024262.1_g000001
rosa_roxburghii	Rroxscaffold_6G00424300 Rroxscaffold_7G00168470
rosa_rugosa	Rorug03G0007200 Rorug03G0007300 Rorug03G0007400 Rorug04G0013500 Rorug06G0291400
rosa_samantha	Rh3AG066700 Rh3BG069100 Rh3CG067500 Rh3DG069000 Rh5AG515500 Rh6AG402100 Rh6BG410600 Rh6CG416300 Rh6CG416400 Rh6DG403500
rosa_wichuraiana	Rw2G021110 Rw3G005270 Rw6G035200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	427
Acc36I	ACCTGC	1 cut(s)	154
AciI	CCGC	1 cut(s)	216
AclWI	GGATC	1 cut(s)	266
AcsI	RAATTY	1 cut(s)	350
AcuI	CTGAAG	1 cut(s)	219
AfiI	CCNNNNNNNGG	2 cut(s)	158, 163
AgsI	TTSAA	3 cut(s)	122, 145, 324
AjnI	CCWGG	3 cut(s)	111, 157, 205
AloI	GAACNNNNNNTCC	2 cut(s)	256, 288
AluBI	AGCT	2 cut(s)	92, 257
AluI	AGCT	2 cut(s)	92, 257
Alw21I	GWGCWC	1 cut(s)	187
AlwI	GGATC	1 cut(s)	266
ApoI	RAATTY	1 cut(s)	350
AspS9I	GGNCC	1 cut(s)	109
AvaII	GGWCC	1 cut(s)	109
BbsI	GAAGAC	1 cut(s)	297
Bbv12I	GWGCWC	1 cut(s)	187
BccI	CCATC	2 cut(s)	78, 377
BciT130I	CCWGG	3 cut(s)	113, 159, 207
BfuAI	ACCTGC	1 cut(s)	154
BisI	GCNGC	1 cut(s)	216
BlsI	GCNGC	1 cut(s)	217
Bme1390I	CCNGG	3 cut(s)	113, 159, 207
Bme18I	GGWCC	1 cut(s)	109
BmgT120I	GGNCC	1 cut(s)	109
BmiI	GGNNCC	1 cut(s)	265
BmrFI	CCNGG	3 cut(s)	113, 159, 207
BpiI	GAAGAC	1 cut(s)	297
BplI	GAGNNNNNCTC	2 cut(s)	357, 389
Bpu10I	CCTNAGC	1 cut(s)	258
BsaAI	YACGTR	1 cut(s)	418
BsaJI	CCNNGG	3 cut(s)	112, 157, 158
BsaXI	ACNNNNNCTCC	2 cut(s)	237, 267
Bsc4I	CCNNNNNNNGG	2 cut(s)	158, 163
Bse1I	ACTGG	1 cut(s)	275
BseBI	CCWGG	3 cut(s)	113, 159, 207
BseDI	CCNNGG	3 cut(s)	112, 157, 158
BseGI	GGATG	1 cut(s)	388
BseLI	CCNNNNNNNGG	2 cut(s)	158, 163
BseMII	CTCAG	1 cut(s)	272
BseNI	ACTGG	1 cut(s)	275
BsiHKAI	GWGCWC	1 cut(s)	187
BslI	CCNNNNNNNGG	2 cut(s)	158, 163
Bsp1286I	GDGCHC	1 cut(s)	187
Bsp143I	GATC	1 cut(s)	271
BspACI	CCGC	1 cut(s)	216
BspCNI	CTCAG	1 cut(s)	271
BspLI	GGNNCC	1 cut(s)	265
BspMI	ACCTGC	1 cut(s)	154
BspPI	GGATC	1 cut(s)	266
BsrI	ACTGG	1 cut(s)	275
BssECI	CCNNGG	3 cut(s)	112, 157, 158
BssMI	GATC	1 cut(s)	271
Bst2UI	CCWGG	3 cut(s)	113, 159, 207
Bst4CI	ACNGT	2 cut(s)	25, 47
Bst6I	CTCTTC	1 cut(s)	358
BstBAI	YACGTR	1 cut(s)	418
BstC8I	GCNNGC	1 cut(s)	90
BstDEI	CTNAG	1 cut(s)	258
BstENI	CCTNNNNNAGG	1 cut(s)	156
BstF5I	GGATG	1 cut(s)	388
BstKTI	GATC	1 cut(s)	274
BstMBI	GATC	1 cut(s)	271
BstMWI	GCNNNNNNNGC	1 cut(s)	367
BstNI	CCWGG	3 cut(s)	113, 159, 207
BstNSI	RCATGY	1 cut(s)	191
BstSCI	CCNGG	3 cut(s)	111, 157, 205
BstSNI	TACGTA	1 cut(s)	418
BstV2I	GAAGAC	1 cut(s)	297
BtsCI	GGATG	1 cut(s)	388
BveI	ACCTGC	1 cut(s)	154
Cac8I	GCNNGC	1 cut(s)	90
Cfr13I	GGNCC	1 cut(s)	109
CsiI	ACCWGGT	1 cut(s)	205
CviAII	CATG	2 cut(s)	71, 188
CviJI	RGCY	5 cut(s)	75, 92, 257, 286, 401
CviKI_1	RGCY	5 cut(s)	75, 92, 257, 286, 401
DdeI	CTNAG	1 cut(s)	258
DpnI	GATC	1 cut(s)	273
DpnII	GATC	1 cut(s)	271
DraI	TTTAAA	1 cut(s)	16
Eam1104I	CTCTTC	1 cut(s)	358
EarI	CTCTTC	1 cut(s)	358
Eco105I	TACGTA	1 cut(s)	418
Eco47I	GGWCC	1 cut(s)	109
Eco57I	CTGAAG	1 cut(s)	219
EcoNI	CCTNNNNNAGG	1 cut(s)	156
EcoO109I	RGGNCCY	1 cut(s)	109
EcoRII	CCWGG	3 cut(s)	111, 157, 205
FaeI	CATG	2 cut(s)	74, 191
FaiI	YATR	8 cut(s)	21, 28, 72, 78, 189, 295, 332, 427
FatI	CATG	2 cut(s)	70, 187
Fnu4HI	GCNGC	1 cut(s)	216
FokI	GGATG	1 cut(s)	395
Fsp4HI	GCNGC	1 cut(s)	216
GluI	GCNGC	1 cut(s)	216
Hin1II	CATG	2 cut(s)	74, 191
HincII	GTYRAC	1 cut(s)	100
HindII	GTYRAC	1 cut(s)	100
HinfI	GANTC	2 cut(s)	118, 302
Hpy166II	GTNNAC	2 cut(s)	100, 280
Hpy188III	TCNNGA	4 cut(s)	122, 137, 299, 324
Hpy8I	GTNNAC	2 cut(s)	100, 280
Hpy99I	CGWCG	1 cut(s)	316
HpyAV	CCTTC	1 cut(s)	158
HpyCH4III	ACNGT	2 cut(s)	25, 47
HpyCH4IV	ACGT	3 cut(s)	240, 311, 417
HpyCH4V	TGCA	1 cut(s)	334
HpyF10VI	GCNNNNNNNGC	1 cut(s)	367
HpyF3I	CTNAG	1 cut(s)	258
HpySE526I	ACGT	3 cut(s)	240, 311, 417
Hsp92II	CATG	2 cut(s)	74, 191
Kzo9I	GATC	1 cut(s)	271
LmnI	GCTCC	1 cut(s)	182
MabI	ACCWGGT	1 cut(s)	205
MaeII	ACGT	3 cut(s)	240, 311, 417
MaeIII	GTNAC	2 cut(s)	61, 209
MalI	GATC	1 cut(s)	273
MboI	GATC	1 cut(s)	271
MboII	GAAGA	4 cut(s)	93, 297, 351, 375
MhlI	GDGCHC	1 cut(s)	187
MluCI	AATT	1 cut(s)	350
MlyI	GAGTC	1 cut(s)	311
MnlI	CCTC	2 cut(s)	297, 373
MseI	TTAA	2 cut(s)	15, 168
MslI	CAYNNNNRTG	1 cut(s)	75
MspA1I	CMGCKG	1 cut(s)	218
MspR9I	CCNGG	3 cut(s)	113, 159, 207
MvaI	CCWGG	3 cut(s)	113, 159, 207
MwoI	GCNNNNNNNGC	1 cut(s)	367
NdeII	GATC	1 cut(s)	271
NlaIII	CATG	2 cut(s)	74, 191
NlaIV	GGNNCC	1 cut(s)	265
NmuCI	GTSAC	1 cut(s)	61
NspI	RCATGY	1 cut(s)	191
PasI	CCCWGGG	1 cut(s)	158
PfeI	GAWTC	1 cut(s)	118
PkrI	GCNGC	1 cut(s)	217
PleI	GAGTC	1 cut(s)	310
PpsI	GAGTC	1 cut(s)	310
Ppu21I	YACGTR	1 cut(s)	418
PpuMI	RGGWCCY	1 cut(s)	109
PsiI	TTATAA	1 cut(s)	427
Psp5II	RGGWCCY	1 cut(s)	109
Psp6I	CCWGG	3 cut(s)	111, 157, 205
PspGI	CCWGG	3 cut(s)	111, 157, 205
PspN4I	GGNNCC	1 cut(s)	265
PspPI	GGNCC	1 cut(s)	109
PspPPI	RGGWCCY	1 cut(s)	109
RseI	CAYNNNNRTG	1 cut(s)	75
SaqAI	TTAA	2 cut(s)	15, 168
SatI	GCNGC	1 cut(s)	216
Sau3AI	GATC	1 cut(s)	271
Sau96I	GGNCC	1 cut(s)	109
SchI	GAGTC	1 cut(s)	311
ScrFI	CCNGG	3 cut(s)	113, 159, 207
SduI	GDGCHC	1 cut(s)	187
SetI	ASST	9 cut(s)	94, 114, 150, 168, 208, 243, 259, 314, 420
SexAI	ACCWGGT	1 cut(s)	205
SinI	GGWCC	1 cut(s)	109
SmiMI	CAYNNNNRTG	1 cut(s)	75
SnaBI	TACGTA	1 cut(s)	418
Sse9I	AATT	1 cut(s)	350
SsiI	CCGC	1 cut(s)	216
StyD4I	CCNGG	3 cut(s)	111, 157, 205
TaaI	ACNGT	2 cut(s)	25, 47
TaiI	ACGT	3 cut(s)	243, 314, 420
TasI	AATT	1 cut(s)	350
TauI	GCSGC	1 cut(s)	218
TfiI	GAWTC	1 cut(s)	118
Tru1I	TTAA	2 cut(s)	15, 168
Tru9I	TTAA	2 cut(s)	15, 168
TseFI	GTSAC	1 cut(s)	61
Tsp45I	GTSAC	1 cut(s)	61
VpaK11BI	GGWCC	1 cut(s)	109
XagI	CCTNNNNNAGG	1 cut(s)	156
XapI	RAATTY	1 cut(s)	350
XceI	RCATGY	1 cut(s)	191

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.