Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0002228

Physical Location & Seq

Genomic Coordinates Reverse (-)

573941 .. 579179

Gene Structure 5239 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0007300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3861 bp

ATGGCAGAGAAACATGGCTTGGGTGGCAATACACATATGGATGAAGATGAAGCACCACCATCAGAAAGCAAAGCGGAAAAAACAAACAGAAGCTGTAGCATCACTGAGATAAAGGAAGACTCAAAGAAGAAGCAGACCAAAGGAAATGAGACTGTTCCATTTCTCAAGCTGTTTTCATTTGCAGATTCAACTGATATCTTATTGATGACTATCGGCACAGTTGGTGCCATTGGGAATGGTTTGTGTATGCCCATTATGACTATACTCTTTGGCCAATTGACTGATTCTTTTGGATATAACTACAATAGCAAAGACATAGTTCATGTTGTTTCCAAGGTCTCTCTAAGATATGTCTACCTGGCTTTGGGGGCTGGTGTTGCAGCATTCCTCCAGGTAGCTTGCTGGATGGCCACAGGGGAGCGACAGGCTGCACGCATAAGGAGTTTATACCTGAAAACCATATTGAGGCAAGAAGTAGCTTTCTTCGATATGGAAACAAACACTGGAGAGGTTGTTGGGAGGATGTCTGGTGATACTGTCTTGATACAAGATGCAATGGGCGAGAAGGTTGGAAAGTTTTTACAACTAATATCGACATTCATTGGAGGCATTGTCATAGCATTCATCAGAGGGTGGCTTCTAACCCTCGTCCTGATGTCCACTATTCCATTTCTTGTGGCAGCCGGAGCAATAATGTCCATTATCATAGTCAAAATGGCTTCCCGAGGACAAAATGCCTATGCGAAAGCTGCAATTGTAGTTGAACAAACAATCAGCTCAATCAGAACTGTTGCATCATTTACCGGAGAGACACAAGCTATAACCAACTATAAGAAATACCTTGTAGATGCTTACAAGTCTGGTGTTCATGAAGGCTTGGCAGCCGGATTGGGTTTTGGCATGTTTATGTTGGTTATGTTATCCAGTTATGGTTTGGCTACATGGTTTGGTGCAAAAATGGTATTGGAACGAGGATATAAAGGAGGAGCTGTGGTCAATGTGATTGTTGCTGTGCTGGCTGGTTCCATGTCTCTAGGCCAGGTATCTCCCTGTATGAGTGCATTTGCTGCTGGTCAGGCTGCAGCCTTTAAGATGTTTGAGACTATAAAGAGGAAACCAGAGATAGATGCTTGTGATACAAAAGGAATGGTATTGGATGACATTCATGGTGACATAGAGCTGAGGGATATTTGCTTCAGTTATCCAACCAGACCGAACGAACAAATATTCCATGGATTGACTCTGAGTATCCCTAGTGGCACAACTACAGCTTTGGTTGGGCAAAGTGGAAGCGGAAAGTCGACAGTGATCTGCCTGATAGAGAGATTCTATGATCCATGGGCTGGTGAGGTTCTCGTAGATGGTATCAACCTCAAAGACTTTCAGCTTAAATGGATCAGAGGAAAAATTGGTCTAGTCAGCCAGGAACCAGTGTTGTTTGCATCGAGCATCCGGGACAATATTTTATATGGAAAGGATGGTGCAACTTCTGAAGAGATAAGAGCAGCATTAGTACTTGCAAATGCTGCTAAGTTTATTGACAAATTGCCTCAGGGGCTGGACACCATGGTTGGGGAGCATGGAACTCAGCTGTCTGGTGGACAGAAGCAGAGGGTTGCCATAGCTCGAGCAGTTCTTAAAGACCCACGAATATTACTTCTAGATGAAGCTACAAGTGCACTGGATGCAGAAACTGAGCTAATTGTACAAGAGGCATTGGACCGAATTATGGTCAATCGAACTACTCTCATTGTTGCTCATCGTTTGAGCACGGTGAGGAATGCTGATATCATTGCTGTTCTTCATAAAGGAAAGGTGATTGAGAAAGGTCCACACTCGGAACTAGTTAGGAATCCTGATGGAGCCTACTCTCAGCTTATACACTTGCAAGAGTTAAGTGAAGACACAGAACAAGCTGCAGACCATCAAACAGCGTCAGAAATCAGTAAAAAAAAATCATTGCAAAGATCCTTAAGTCATGATTCATCCGGAGCAGGAAGTAGCAGCCGCCACTCATTCAAACTACCATTCGGATTTCCCACAGGACTTGAGGTAGTAGATATTGTTACAAAAGAACCAGAATCCCTTACAACAACTATGCAACAATCTCCAAAGGCTCCTATCTACCGCCTTGCCTACCTTAACAAGCCAGAGATTCCAGTGCTAGTAATTGGAGCTACAGCTGCAATAGCCAATGGTGTGATATTTCCAGTTGTTGGTCTAATAATTTCCAGTGCCATCAAAACATTATATGAACCACCTCATCAACTCAAAAAGGATTCTAAGTTTTGGGCACTAATGTATGTGACCCTTGGTTTGGCTTCCTTACTGGTGATTCCAGTAAGATCATACTTCTTTTCTGTGGCTGGATGCAAGCTAATTGAACGTATTAGATTGATGTGTTTCACAAAGGTGGTTCACATGGAGATTGGTTGGTTTGATGAGCCTCGGAGTGGCGAAATTGGTGCAAAGCTCTCGGCAAATGCAGCCACAGTGCGCTCCCTAGTTGGTGATGCACTTGCTCAGCTGATTGGAAATATTGCATCGGCAGTTGCCGGTTTAGTGATTGCTTTTGTTGCATGTTGGCAGCTGGCATTTATTGTCCTGGTATTGTTCCCTCTTATTGGTGTCACAGGATATATGGAATTAAAATTTATAAAAGGGTTCAGCGCAGATTCAAAGATGATGTATGAGGAAGCAAGCCAGGTTGCTACCGATGCAGTTGGGAGTATAAGAACAGTTGCTTCCTTCTGCGCCGAAGAGAAGGTGGTGCAACAATACAACACAAAATGTGAAGGCCCTATGAGGACAGGGATAAGGCAAGGCATTATCAGTGGCATGGGATTCGGATTATCGTTCTTCTTGATGTTTTCTGTCTACGCAACAAGTTTTTATGCAGGAGCTCAACTTGTGGTGCATGGCAAAACAACGTTCTTAGATGTTTTTCGGGTTTTCTTTTCTCTAACTATGGCTGCTATGACGATTTCTCAATCGAGTTCCTTAGCTCCTGATTCATCTAAAGCCAATGCTGCTACTGCTTCTATCTTTGCCATAATAGATCAGGAGTCAAAGATTGATCCGAGTGATGAGTCTGGGATGATAATGGACAATGTAAAGGGAGATATTGAGCTTCGTAATGTATGCTTCAGGTATCCGTCCAGGCCAGACGTTCAGATTTTTCAAAACCTCAACCTAGTTATTCATTCTGGCAAGACAGTTGCCTTGGTTGGAGAAAGTGGGAGTGGGAAATCCACCGTGATCTCACTGTTGCAAAGATTTTATGATCCTAACTCGGGTCACATTACACTCGATGGTGTTGAAATTTGGAAGTTCCAATTGAAGTGGCTGAGGCAACAAATGGGACTTGTGATCCAAGAACCAGTTTTGTTTAACGATACAATTCGTGCCAACATTGCATATGGAAAGGAAGGAAATGCAACAGAAGCTGAAATCCTGGCTGCATCCGAGTCTGCCAATGCCCACAATTTCATTAGTGGCTTACAAGAGGGCTATGACACCATAGTGGGGGAACGAGGAGTCCAATTGTCAGGTGGACAGAAGCAACGTGTAGCGATTGCGCGTGCTATTCTTAAAAGCCCCAAGATCTTACTACTAGATGAGGCTACCAGTGCACTAGATGCTGAATCTGAGAGAGTAGTACAAGATGCATTAGACCTTGTCATGCTGAATCGGACAACAGTTGTGGTGGCACATAGATTATCTACAATCAGAAATGCAAACGTAATTGCAGTTGTCAGAGACGGAGCTGTAGTAGAGAAGGGAAAGCATGAGACTTTGATTAGCGTCAAGGATGGTTTCTATGCCTCCTTAGTTGCATTACACAATACACATCAAGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006338 GO:0006355 GO:0006996 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008283 GO:0009719 GO:0009725 GO:0009733 GO:0009735 GO:0009736 GO:0009739 GO:0009755 GO:0009787 GO:0009788 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010646 GO:0010648 GO:0016043 GO:0019219 GO:0019222 GO:0022622 GO:0023051 GO:0023052 GO:0023057 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048364 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051239 GO:0051252 GO:0051253 GO:0051276 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0071840 GO:0080090 GO:0097159 GO:0099402 GO:1901363 GO:1901419 GO:1901420 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:1905957 GO:1905958 GO:2000023 GO:2000026 GO:2000069 GO:2000112 GO:2000113 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko05165 ko05203 map05165 map05203

Pfam Domains

Protein Families

CHDCT2 Chromo DUF1086 DUF1087 Helicase_C PHD SNF2_N

Protein Analysis

1286

Amino Acids

139.28

Weight (kDa)

6.69

Isoelectric Point (pI)

37.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_membrane	PF00664	70 - 342	1.3e-56	ABC transporter transmembrane region
ABC_tran	PF00005	411 - 559	1e-31	ABC transporter
ABC_membrane	PF00664	723 - 993	3.3e-52	ABC transporter transmembrane region
ABC_tran	PF00005	1061 - 1210	4.5e-33	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002228)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25170 AT2G25170 AT2G25170 AT2G25170 AT4G31900 AT4G31900 AT4G31900
fragaria_vesca	FvH4_2g40920
malus_domestica	MD08G1058800.v1.1 MD15G1037700.v1.1
prunus_persica	Prupe.1G391600_v2.0.a1
pyrus_communis	pycom08g04860 pycom08g04870 pycom15g03490
rosa_chinensis	RchiOBHm_Chr3g0455421 RchiOBHm_Chr6g0299661
rosa_laevigata	RLG00000011399 RLG00000025364
rosa_multiflora	Rmu_co8019708.1_g000001 Rmu_co8099568.1_g000001 Rmu_sc0022216.1_g000002 Rmu_sc0024261.1_g000001 Rmu_sc0024262.1_g000001
rosa_roxburghii	Rroxscaffold_6G00424300 Rroxscaffold_7G00168470
rosa_rugosa	Rorug03G0007200 Rorug03G0007300 Rorug03G0007400 Rorug04G0013500 Rorug06G0291400
rosa_samantha	Rh3AG066700 Rh3BG069100 Rh3CG067500 Rh3DG069000 Rh5AG515500 Rh6AG402100 Rh6BG410600 Rh6CG416300 Rh6CG416400 Rh6DG403500
rosa_wichuraiana	Rw2G021110 Rw3G005270 Rw6G035200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2657
AccB1I	GGYRCC	1 cut(s)	224
AccB7I	CCANNNNNTGG	2 cut(s)	1343, 2216
AccI	GTMKAC	3 cut(s)	354, 1301, 2877
AccII	CGCG	1 cut(s)	3580
AccIII	TCCGGA	1 cut(s)	1988
AciI	CCGC	4 cut(s)	74, 1293, 2008, 2128
AclI	AACGTT	1 cut(s)	2930
AclWI	GGATC	6 cut(s)	1328, 1403, 1962, 3071, 3278, 3364
AcoI	YGGCCR	2 cut(s)	271, 408
AcsI	RAATTY	2 cut(s)	2651, 3321
AcuI	CTGAAG	3 cut(s)	1180, 1512, 3130
AfaI	GTAC	3 cut(s)	1515, 1707, 3660
AflII	CTTAAG	1 cut(s)	1972
AflIII	ACRYGT	1 cut(s)	3565
AgsI	TTSAA	8 cut(s)	189, 764, 2020, 2384, 2679, 3182, 3320, 3340
AhlI	ACTAGT	1 cut(s)	1843
AjnI	CCWGG	8 cut(s)	357, 390, 1038, 1422, 2604, 2703, 3158, 3453
AjuI	GAANNNNNNNTTGG	1 cut(s)	34
AleI	CACNNNNGTG	2 cut(s)	2411, 3521
AloI	GAACNNNNNNTCC	4 cut(s)	1212, 1244, 3522, 3554
Alw21I	GWGCWC	4 cut(s)	1681, 1772, 2905, 3634
Alw26I	GTCTC	7 cut(s)	143, 343, 803, 1035, 1094, 3753, 3785
Alw44I	GTGCAC	2 cut(s)	1677, 3630
AlwI	GGATC	6 cut(s)	1328, 1403, 1962, 3071, 3278, 3364
AlwNI	CAGNNNCTG	4 cut(s)	93, 1558, 1694, 3446
Ama87I	CYCGRG	3 cut(s)	723, 1626, 3292
Aor13HI	TCCGGA	1 cut(s)	1988
AoxI	GGCC	5 cut(s)	271, 408, 1036, 2797, 3161
ApaLI	GTGCAC	2 cut(s)	1677, 3630
ApoI	RAATTY	2 cut(s)	2651, 3321
ArsI	GACNNNNNNTTYG	2 cut(s)	2299, 2331
AspLEI	GCGC	4 cut(s)	2499, 2672, 2756, 3580
AspS9I	GGNCC	3 cut(s)	1720, 1829, 2798
AsuC2I	CCSGG	1 cut(s)	1454
AsuHPI	GGTGA	7 cut(s)	542, 1181, 1358, 1786, 1828, 2344, 2522
AvaI	CYCGRG	3 cut(s)	723, 1626, 3292
AvaII	GGWCC	2 cut(s)	1720, 1829
AxyI	CCTNAGG	1 cut(s)	1551
BaeGI	GKGCMC	3 cut(s)	1681, 2296, 3634
BalI	TGGCCA	2 cut(s)	273, 410
BanI	GGYRCC	1 cut(s)	224
BanII	GRGCYC	1 cut(s)	2905
BbsI	GAAGAC	2 cut(s)	123, 1908
Bbv12I	GWGCWC	4 cut(s)	1681, 1772, 2905, 3634
BbvCI	CCTCAGC	2 cut(s)	1181, 3347
BccI	CCATC	9 cut(s)	67, 400, 1355, 1472, 1853, 1932, 2246, 3305, 3806
BcgI	CGANNNNNNTGC	6 cut(s)	2447, 2457, 2481, 2491, 2827, 2861
BciT130I	CCWGG	8 cut(s)	359, 392, 1040, 1424, 2606, 2705, 3160, 3455
BciVI	GTATCC	2 cut(s)	1259, 3162
BcnI	CCSGG	1 cut(s)	1454
BcoDI	GTCTC	7 cut(s)	143, 343, 803, 1035, 1094, 3753, 3785
BcuI	ACTAGT	1 cut(s)	1843
BfmI	CTRYAG	6 cut(s)	94, 1080, 1266, 1917, 2178, 3768
BfrI	CTTAAG	1 cut(s)	1972
BfuI	GTATCC	2 cut(s)	1259, 3162
BglI	GCCNNNNNGGC	1 cut(s)	1555
BglII	AGATCT	1 cut(s)	3603
BlpI	GCTNAGC	1 cut(s)	2523
BmcAI	AGTACT	1 cut(s)	1515
Bme1390I	CCNGG	9 cut(s)	359, 392, 1040, 1424, 1454, 2606, 2705, 3160, 3455
Bme18I	GGWCC	2 cut(s)	1720, 1829
BmeT110I	CYCGRG	3 cut(s)	723, 1626, 3292
BmgT120I	GGNCC	3 cut(s)	1720, 1829, 2798
BmiI	GGNNCC	5 cut(s)	226, 1024, 1428, 1864, 2118
BmrFI	CCNGG	9 cut(s)	359, 392, 1040, 1424, 1454, 2606, 2705, 3160, 3455
BpiI	GAAGAC	2 cut(s)	123, 1908
BpmI	CTGGAG	2 cut(s)	374, 525
Bpu10I	CCTNAGC	3 cut(s)	1181, 3001, 3347
Bpu1102I	GCTNAGC	1 cut(s)	2523
BpuEI	CTTGAG	2 cut(s)	149, 2069
BpuMI	CCSGG	1 cut(s)	1454
BsaBI	GATNNNNATC	1 cut(s)	209
BsaI	GGTCTC	1 cut(s)	343
BsaJI	CCNNGG	8 cut(s)	333, 724, 1231, 1337, 1566, 2311, 2447, 3222
BsaWI	WCCGGW	2 cut(s)	803, 1988
Bse118I	RCCGGY	1 cut(s)	2555
Bse21I	CCTNAGG	1 cut(s)	1551
Bse3DI	GCAATG	4 cut(s)	561, 1791, 1958, 3411
Bse8I	GATNNNNATC	1 cut(s)	209
BseAI	TCCGGA	1 cut(s)	1988
BseBI	CCWGG	8 cut(s)	359, 392, 1040, 1424, 2606, 2705, 3160, 3455
BseDI	CCNNGG	8 cut(s)	333, 724, 1231, 1337, 1566, 2311, 2447, 3222
BseJI	GATNNNNATC	1 cut(s)	209
BseMI	GCAATG	4 cut(s)	561, 1791, 1958, 3411
BseRI	GAGGAG	2 cut(s)	999, 3549
BseSI	GKGCMC	3 cut(s)	1681, 2296, 3634
BsgI	GTGCAG	1 cut(s)	414
Bsh1236I	CGCG	1 cut(s)	3580
BshFI	GGCC	5 cut(s)	273, 410, 1038, 2799, 3163
BshNI	GGYRCC	1 cut(s)	224
BsiHKAI	GWGCWC	4 cut(s)	1681, 1772, 2905, 3634
BsiHKCI	CYCGRG	3 cut(s)	723, 1626, 3292
BsiSI	CCGG	6 cut(s)	684, 804, 885, 1453, 1989, 2556
BslFI	GGGAC	2 cut(s)	1469, 3375
BsmAI	GTCTC	7 cut(s)	143, 343, 803, 1035, 1094, 3753, 3785
BsmBI	CGTCTC	1 cut(s)	3753
BsmFI	GGGAC	2 cut(s)	1469, 3375
BsmI	GAATGC	3 cut(s)	383, 620, 1786
BsnI	GGCC	5 cut(s)	273, 410, 1038, 2799, 3163
Bso31I	GGTCTC	1 cut(s)	343
BsoBI	CYCGRG	3 cut(s)	723, 1626, 3292
Bsp1286I	GDGCHC	5 cut(s)	1681, 1772, 2296, 2905, 3634
Bsp13I	TCCGGA	1 cut(s)	1988
Bsp1407I	TGTACA	1 cut(s)	1705
Bsp1720I	GCTNAGC	1 cut(s)	2523
Bsp19I	CCATGG	3 cut(s)	1231, 1337, 1566
BspACI	CCGC	4 cut(s)	74, 1293, 2008, 2128
BspANI	GGCC	5 cut(s)	273, 410, 1038, 2799, 3163
BspEI	TCCGGA	1 cut(s)	1988
BspFNI	CGCG	1 cut(s)	3580
BspHI	TCATGA	2 cut(s)	868, 1978
BspLI	GGNNCC	5 cut(s)	226, 1024, 1428, 1864, 2118
BspMAI	CTGCAG	2 cut(s)	1084, 1921
BspPI	GGATC	6 cut(s)	1328, 1403, 1962, 3071, 3278, 3364
BspT107I	GGYRCC	1 cut(s)	224
BspTI	CTTAAG	1 cut(s)	1972
BspTNI	GGTCTC	1 cut(s)	343
BsrDI	GCAATG	4 cut(s)	561, 1791, 1958, 3411
BsrFI	RCCGGY	1 cut(s)	2555
BsrGI	TGTACA	1 cut(s)	1705
BssAI	RCCGGY	1 cut(s)	2555
BssECI	CCNNGG	8 cut(s)	333, 724, 1231, 1337, 1566, 2311, 2447, 3222
BssT1I	CCWWGG	6 cut(s)	333, 1231, 1337, 1566, 2311, 3222
Bst2UI	CCWGG	8 cut(s)	359, 392, 1040, 1424, 2606, 2705, 3160, 3455
Bst6I	CTCTTC	2 cut(s)	1488, 2754
BstAFI	CTTAAG	1 cut(s)	1972
BstAPI	GCANNNNNTGC	4 cut(s)	1067, 1526, 1685, 3638
BstAUI	TGTACA	1 cut(s)	1705
BstC8I	GCNNGC	7 cut(s)	400, 433, 1017, 2375, 2592, 2701, 3582
BstDSI	CCRYGG	3 cut(s)	1231, 1337, 1566
BstFNI	CGCG	1 cut(s)	3580
BstHHI	GCGC	4 cut(s)	2499, 2672, 2756, 3580
BstMAI	GTCTC	7 cut(s)	143, 343, 803, 1035, 1094, 3753, 3785
BstNI	CCWGG	8 cut(s)	359, 392, 1040, 1424, 2606, 2705, 3160, 3455
BstNSI	RCATGY	2 cut(s)	904, 2583
BstSCI	CCNGG	9 cut(s)	357, 390, 1038, 1422, 1452, 2604, 2703, 3158, 3453
BstSFI	CTRYAG	6 cut(s)	94, 1080, 1266, 1917, 2178, 3768
BstSLI	GKGCMC	3 cut(s)	1681, 2296, 3634
BstUI	CGCG	1 cut(s)	3580
BstV2I	GAAGAC	2 cut(s)	123, 1908
BstX2I	RGATCY	2 cut(s)	1967, 3603
BstYI	RGATCY	2 cut(s)	1967, 3603
Bsu36I	CCTNAGG	1 cut(s)	1551
BsuI	GTATCC	2 cut(s)	1259, 3162
BsuRI	GGCC	5 cut(s)	273, 410, 1038, 2799, 3163
BtgI	CCRYGG	3 cut(s)	1231, 1337, 1566
Cac8I	GCNNGC	7 cut(s)	400, 433, 1017, 2375, 2592, 2701, 3582
CaiI	CAGNNNCTG	4 cut(s)	93, 1558, 1694, 3446
CciI	TCATGA	2 cut(s)	868, 1978
CfoI	GCGC	4 cut(s)	2499, 2672, 2756, 3580
Cfr10I	RCCGGY	1 cut(s)	2555
Cfr13I	GGNCC	3 cut(s)	1720, 1829, 2798
CseI	GACGC	2 cut(s)	1923, 3793
Csp6I	GTAC	3 cut(s)	1514, 1706, 3659
CspCI	CAANNNNNGTGG	6 cut(s)	2029, 2064, 3323, 3358, 3684, 3719
CviQI	GTAC	3 cut(s)	1514, 1706, 3659
EaeI	YGGCCR	2 cut(s)	271, 408
Eam1104I	CTCTTC	2 cut(s)	1488, 2754
EarI	CTCTTC	2 cut(s)	1488, 2754
Ecl136II	GAGCTC	1 cut(s)	2903
Eco130I	CCWWGG	6 cut(s)	333, 1231, 1337, 1566, 2311, 3222
Eco24I	GRGCYC	1 cut(s)	2905
Eco31I	GGTCTC	1 cut(s)	343
Eco32I	GATATC	2 cut(s)	196, 1789
Eco47I	GGWCC	2 cut(s)	1720, 1829
Eco53kI	GAGCTC	1 cut(s)	2903
Eco57I	CTGAAG	3 cut(s)	1180, 1512, 3130
Eco81I	CCTNAGG	1 cut(s)	1551
Eco88I	CYCGRG	3 cut(s)	723, 1626, 3292
EcoICRI	GAGCTC	1 cut(s)	2903
EcoO109I	RGGNCCY	1 cut(s)	2798
EcoRII	CCWGG	8 cut(s)	357, 390, 1038, 1422, 2604, 2703, 3158, 3453
EcoRV	GATATC	2 cut(s)	196, 1789
EcoT14I	CCWWGG	6 cut(s)	333, 1231, 1337, 1566, 2311, 3222
EcoT22I	ATGCAT	1 cut(s)	3670
EcoT38I	GRGCYC	1 cut(s)	2905
ErhI	CCWWGG	6 cut(s)	333, 1231, 1337, 1566, 2311, 3222
Esp3I	CGTCTC	1 cut(s)	3753
FaqI	GGGAC	2 cut(s)	1469, 3375
FauNDI	CATATG	2 cut(s)	36, 3418
FblI	GTMKAC	3 cut(s)	354, 1301, 2877
FriOI	GRGCYC	1 cut(s)	2905
GlaI	GCGC	4 cut(s)	2498, 2671, 2755, 3579
GsuI	CTGGAG	2 cut(s)	374, 525
HaeIII	GGCC	5 cut(s)	273, 410, 1038, 2799, 3163
HapII	CCGG	6 cut(s)	684, 804, 885, 1453, 1989, 2556
HgaI	GACGC	2 cut(s)	1923, 3793
HhaI	GCGC	4 cut(s)	2499, 2672, 2756, 3580
Hin6I	GCGC	4 cut(s)	2497, 2670, 2754, 3578
HinP1I	GCGC	4 cut(s)	2497, 2670, 2754, 3578
HincII	GTYRAC	1 cut(s)	1302
HindII	GTYRAC	1 cut(s)	1302
HpaII	CCGG	6 cut(s)	684, 804, 885, 1453, 1989, 2556
HphI	GGTGA	7 cut(s)	542, 1181, 1358, 1786, 1828, 2344, 2522
HpyAV	CCTTC	7 cut(s)	559, 866, 2758, 2758, 2789, 3422, 3772
HpyCH4IV	ACGT	5 cut(s)	2386, 2930, 3168, 3565, 3741
HpySE526I	ACGT	5 cut(s)	2386, 2930, 3168, 3565, 3741
HspAI	GCGC	4 cut(s)	2497, 2670, 2754, 3578
Kpn2I	TCCGGA	1 cut(s)	1988
MaeII	ACGT	5 cut(s)	2386, 2930, 3168, 3565, 3741
MaeIII	GTNAC	5 cut(s)	1169, 2065, 2305, 2629, 3296
MboII	GAAGA	9 cut(s)	56, 128, 139, 475, 1505, 1793, 1913, 2771, 2851
MfeI	CAATTG	4 cut(s)	275, 753, 3335, 3542
MflI	RGATCY	2 cut(s)	1967, 3603
MhlI	GDGCHC	5 cut(s)	1681, 1772, 2296, 2905, 3634
MlsI	TGGCCA	2 cut(s)	273, 410
MluNI	TGGCCA	2 cut(s)	273, 410
MlyI	GAGTC	6 cut(s)	113, 1234, 3074, 3098, 3476, 3546
MmeI	TCCRAC	3 cut(s)	550, 1229, 3208
Mox20I	TGGCCA	2 cut(s)	273, 410
Mph1103I	ATGCAT	1 cut(s)	3670
MroI	TCCGGA	1 cut(s)	1988
MscI	TGGCCA	2 cut(s)	273, 410
MseI	TTAA	9 cut(s)	1089, 1389, 1638, 1895, 1973, 2142, 2648, 3390, 3591
MslI	CAYNNNNRTG	4 cut(s)	39, 905, 2411, 3521
Msp20I	TGGCCA	2 cut(s)	273, 410
MspA1I	CMGCKG	4 cut(s)	1591, 2183, 2527, 2590
MspCI	CTTAAG	1 cut(s)	1972
MspI	CCGG	6 cut(s)	684, 804, 885, 1453, 1989, 2556
MspR9I	CCNGG	9 cut(s)	359, 392, 1040, 1424, 1454, 2606, 2705, 3160, 3455
MunI	CAATTG	4 cut(s)	275, 753, 3335, 3542
Mva1269I	GAATGC	3 cut(s)	383, 620, 1786
MvaI	CCWGG	8 cut(s)	359, 392, 1040, 1424, 2606, 2705, 3160, 3455
MvnI	CGCG	1 cut(s)	3580
NciI	CCSGG	1 cut(s)	1454
NcoI	CCATGG	3 cut(s)	1231, 1337, 1566
NdeI	CATATG	2 cut(s)	36, 3418
NlaIV	GGNNCC	5 cut(s)	226, 1024, 1428, 1864, 2118
NmeAIII	GCCGAG	1 cut(s)	2456
NmuCI	GTSAC	4 cut(s)	1169, 2305, 2629, 3296
NsiI	ATGCAT	1 cut(s)	3670
NspI	RCATGY	2 cut(s)	904, 2583
OliI	CACNNNNGTG	2 cut(s)	2411, 3521
PaeR7I	CTCGAG	1 cut(s)	1626
PagI	TCATGA	2 cut(s)	868, 1978
PctI	GAATGC	3 cut(s)	383, 620, 1786
PflFI	GACNNNGTC	1 cut(s)	3677
PflMI	CCANNNNNTGG	2 cut(s)	1343, 2216
PfoI	TCCNGGA	1 cut(s)	1452
PleI	GAGTC	6 cut(s)	113, 1234, 3073, 3097, 3475, 3545
PpsI	GAGTC	6 cut(s)	113, 1234, 3073, 3097, 3475, 3545
PsiI	TTATAA	1 cut(s)	2657
Psp124BI	GAGCTC	1 cut(s)	2905
Psp1406I	AACGTT	1 cut(s)	2930
Psp6I	CCWGG	8 cut(s)	357, 390, 1038, 1422, 2604, 2703, 3158, 3453
PspGI	CCWGG	8 cut(s)	357, 390, 1038, 1422, 2604, 2703, 3158, 3453
PspN4I	GGNNCC	5 cut(s)	226, 1024, 1428, 1864, 2118
PspPI	GGNCC	3 cut(s)	1720, 1829, 2798
PspXI	VCTCGAGB	1 cut(s)	1626
PstI	CTGCAG	2 cut(s)	1084, 1921
PstNI	CAGNNNCTG	4 cut(s)	93, 1558, 1694, 3446
PsuI	RGATCY	2 cut(s)	1967, 3603
PsyI	GACNNNGTC	1 cut(s)	3677
PvuII	CAGCTG	4 cut(s)	1591, 2183, 2527, 2590
RsaI	GTAC	3 cut(s)	1515, 1707, 3660
RsaNI	GTAC	3 cut(s)	1514, 1706, 3659
RseI	CAYNNNNRTG	4 cut(s)	39, 905, 2411, 3521
SacI	GAGCTC	1 cut(s)	2905
SalI	GTCGAC	1 cut(s)	1300
SaqAI	TTAA	9 cut(s)	1089, 1389, 1638, 1895, 1973, 2142, 2648, 3390, 3591
Sau96I	GGNCC	3 cut(s)	1720, 1829, 2798
ScaI	AGTACT	1 cut(s)	1515
SchI	GAGTC	6 cut(s)	113, 1234, 3074, 3098, 3476, 3546
ScrFI	CCNGG	9 cut(s)	359, 392, 1040, 1424, 1454, 2606, 2705, 3160, 3455
SduI	GDGCHC	5 cut(s)	1681, 1772, 2296, 2905, 3634
SfcI	CTRYAG	6 cut(s)	94, 1080, 1266, 1917, 2178, 3768
Sfr274I	CTCGAG	1 cut(s)	1626
SinI	GGWCC	2 cut(s)	1720, 1829
SlaI	CTCGAG	1 cut(s)	1626
SmiMI	CAYNNNNRTG	4 cut(s)	39, 905, 2411, 3521
SmlI	CTYRAG	4 cut(s)	164, 1626, 1972, 2048
SmoI	CTYRAG	4 cut(s)	164, 1626, 1972, 2048
SpeI	ACTAGT	1 cut(s)	1843
SsiI	CCGC	4 cut(s)	74, 1293, 2008, 2128
SspI	AATATT	4 cut(s)	1227, 1462, 1653, 2539
SstI	GAGCTC	1 cut(s)	2905
StyD4I	CCNGG	9 cut(s)	357, 390, 1038, 1422, 1452, 2604, 2703, 3158, 3453
StyI	CCWWGG	6 cut(s)	333, 1231, 1337, 1566, 2311, 3222
TaiI	ACGT	5 cut(s)	2389, 2933, 3171, 3568, 3744
TaqI	TCGA	8 cut(s)	486, 593, 1301, 1445, 1627, 1738, 2993, 3309
TaqII	GACCGA	2 cut(s)	1228, 1737
TatI	WGTACW	3 cut(s)	1513, 1705, 3658
TauI	GCSGC	1 cut(s)	2010
Tru1I	TTAA	9 cut(s)	1089, 1389, 1638, 1895, 1973, 2142, 2648, 3390, 3591
Tru9I	TTAA	9 cut(s)	1089, 1389, 1638, 1895, 1973, 2142, 2648, 3390, 3591
TseFI	GTSAC	4 cut(s)	1169, 2305, 2629, 3296
Tsp45I	GTSAC	4 cut(s)	1169, 2305, 2629, 3296
TspGWI	ACGGA	2 cut(s)	3144, 3777
Tth111I	GACNNNGTC	1 cut(s)	3677
Van91I	CCANNNNNTGG	2 cut(s)	1343, 2216
Vha464I	CTTAAG	1 cut(s)	1972
VneI	GTGCAC	2 cut(s)	1677, 3630
VpaK11BI	GGWCC	2 cut(s)	1720, 1829
XapI	RAATTY	2 cut(s)	2651, 3321
XbaI	TCTAGA	1 cut(s)	1660
XceI	RCATGY	2 cut(s)	904, 2583
XcmI	CCANNNNNNNNNTGG	2 cut(s)	931, 3548
XhoI	CTCGAG	1 cut(s)	1626
XmiI	GTMKAC	3 cut(s)	354, 1301, 2877
ZrmI	AGTACT	1 cut(s)	1515
Zsp2I	ATGCAT	1 cut(s)	3670

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.