Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0002228

Physical Location & Seq

Genomic Coordinates Reverse (-)

45298075 .. 45308923

Gene Structure 10849 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025364

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3951 bp

ATGGATGCTGATTCAATAGCTACTCTCACTCTGCAGAATATGAGTAGCTTGGTTGAGAGGCTGCGCACTAGATCAGACCGAAAGCCAATTTATAATATTGATGAATCTGATGATGATCCCGATTTTGGGACTGGAAAACCTGGAAGAGCTCAGGAAACATTTGAGAAGATTGTTAGGACTGACGTGAAAGATAATTCCTGTCAAGCCTGTGGTGAAAGTGAGAATCTTATGGAATGTGAGACATGCAACTATGCATATCATGCTAAGTGTTTACTTCCCCCGTTAAAGGCTCCTCTACCTGAAAGATGGCGATGTCCGGAATGTGTGAGCCCTCTAACGGATATTGACAAGATTCTGGATTGTGACAGGCGACCTACTGTGGCGGATGATAGTGATGCCAGAAAGATGGGTTCAAAGCAGATTTTTGTTAAACAATATCTTGTGAAGTGGAAGGGACTATCATATCTACATTGCACATGGATCCCTGAGAAAGAATTTTTCAAAGCATGCAAGACATACCCGCGACTAAAGCAGAAGGTTAACAATTTCAATCGTCAAAGGTCTTCCATTAATAACACAGAGGAGGAATTTGTTGGCATTCGACCCGAATGGACAACTGTTGACCGGATCCTTGCTTGCAGGGGTGACGATGAGAAGCAATATCTTGTAAAGTGGCAAGAACTTCCTTACGATGAATGCTACTGGGAAGTGGAGGCTGATATCTCCACATTTCAGCCAGAAATAGAGAAATTCCATAGAATCCAGTCTAGATCTCACAAATTGTCTGGTAAGCAGAAGAGCAGTCCTAAAGATGCTCTCGAATCAAAAAAGAAGCAGAAAGAGTTTCAACAGTTTGAACACAGTCCTGAATTTCTTTCTGGAGGTGCACTGCATCCCTATCAGCTTGAAGGTTTGAACTTTTTACGCTTCTCCTGGTCCAAACAAACTCCTGTCATACTTGCAGATGAGATGGGACTTGGCAAAACTATACAGAGTATAGCTTTTTTAGCATCTCTGTTTGAAGACAAAGTCTATCCACATCTAGTAGTGGCTCCACTTTCAACGTTACGAAATTGGGAACGGGAATTCGCAACATGGGCACCTCAAATGAATGTTGTTATGTATGTTGGCTCTTCCCAAGCCCGTGCGGTCATAAGGGAATACGAATTTTACTTCCCCAAAAATCACAAGAATATCAACAAAAAGAAATCTGGTCAGATCATTAGTGAGAGCAAGCAAGATACGATCAAGTTTGATGTCCTTCTCACATCATATGAGATGATTAACTTGGACTCTACATCACTGAAACCGATAAAGTGGGAGTGCATGATTGTTGATGAAGGACATCGTCTCAAAAACAAGGATTCAAAATTGTTTTCATCATTACAGCAGTACTGGACGAATCATCGCACACTTCTGACTGGAACTCCTCTTCAGAACAATATGGATGAACTTTTCATGCTTATGCACTTCCTTGATGCTGGCAAGGTGAGGGTGAAAAAAGATGTCATGAAAGAATTACCTCCTAAGAAGGAACTTATATTACGCATTGAATTAAGCAGCAAGCAGAAAGAATATTACAAAGCAATTCTGACTCGTAACTATCAGATACTAACTCGTCGTGGTGGTGCACAGATATCTCTTATCAATGTGGTCATGGAGTTGCGCAAGCTCTGTTGTCATGCTTATATGCTTGAGGGAGTAGAACTGGACATAGCAGATGCCAATGAATCTCACAAACAACTTTTGGAATCTTCTGGAAAACTGCAAGTATTGGACAAAATGCTGGTAAAACTTAAGCAGCAAGGGCACAGGGTGCTTATCTATTCACAATTTCAACACATGTTGGATTTGCTAGAAGACTACTGTACATACAAAAAATGGCAGTATGAACGAATAGATGGTAAAGTTGGTGGAGCTGAGAGACAAATAAGGATAGATCGATTCAATGCCAAAAATTCTTCCAGGTTTTGCTTTCTGCTTTCCACTAGAGCAGGGGGCTTGGGCATAAACCTTGCAACTGCTGACACAGTGATCATATATGATAGTGATTGGAATCCTCATGCAGATCTACAAGCTATGGCTAGAGCTCATCGACTTGGGCAAACTAACAAGGTGATGATTTATAGGCTAATAACACGAGGAACAATTGAAGAAAGAATGATGCAACTGACTAAGAAGAAAATGGTATTGGAACATTTGGTTGTTGGAAGGTTAAAGGCTCAACACATCAACCAGGAAGAGCTAGATGACATCATTCGATACGGATCAAAGGAGTTATTTGCTGATGAAAATGATGAAGCAGGAAAATCCCGTCAAATTCATTATGATGATGCTGCGATAGAGAGATTACTTGATCGCGAACAAGCTGGGGACGATGACACTCCGTTGGAGGAAGAAGATGAAGATGGATTTTTAAAGGCCTTTAAGGTTGCAAATTTTGAATACATTGACGAAGCAGAGGGCGTAGAAGAGGAGGAACCAAAAAAGGCTGCAGTTGACAGTAGTCCTACCAACAATGATAAATCAAATTTCTGGGAAGATTTGTTAAAGGACAGTTATGAAGCGCATAAAGTTGAAGAATTAAACGCTTTAGGCAAAGGGAAGAGAAGTCGTAAGCAGATGGTATCTGTTGAAGACGATGATCCCGCTGGTTTGGAAGATGTAAGTTCTGATGGAGAGGATGATAACTATGAAGCTGAAGTGACGGATGGCGAAACAGCTTCCTCTGGACCACTTTCTGGAAATCTTTCTGCAGGGAGAAAGCCTAATAAAAAGAGAAGTCGTGTGGATAGTGCAGAACCCCTTCCTTTGATGGAAGGAGAAGGAAATTCATTCAAAGTCTTGGGTTTCAATCAAAATCAGAGGGCTACATTTCTAAAAAATTTTATGAGGTTTGGGATGGTGGATGATGACTATAAGGAGTTTGTAGCACGCATGAAGCAGAAGACATATGAAGAAATAAAAGCTTATGCTACTCTATTCTTGAAACACATAATTGAACCATTAACAGACTCCCCAACCTTTTCAGATGGTGTCCCTAAAGAAGGACTCAATATAACAGACGTACTTGTTCGGTATTCAGTTATATCTATGATTCATAAAAAAGCAAAGTTTGCAACAGAAAATCCAGGCACTCCTTTATATGAAGATTACGTCCTGTTCCGTTACCCAGGATTGAAGGGTGGCAAATTTTGGAAGGTTGATCATGATGGGATATTACTGCATGCTGTATTAAAGCATGGCTATGGAAGATGGCAAGCTATTGTTGACGACAAGGACCTGGGGATTCAAGAAGTTATTTGTCAAGAGTTGAACCTTCCTATCCCAGGGCAGGTTAAAGAACAAAATGGAGCACATGCTAATACTGAAGCACCTGGTAACGCTGCTGGAAATGGTAATGGGAATGACGTAGGAGAAAATGTAGCTCAGGGAACCATTGATCCAGTAAACCAGCCTCAATCATATCCAGAGTCTTCTACGTCGCATCATTCTAGAGATATGCAAAGAAGATTGGTAGAATTTATCAAGCGAAGAGTGCTTCTCTTGGAGGATGGCAACAATAAAGAAGCCCAGAAAGAATACTATGATGAGTTGTATGCAAATGAGATTGCCGAGCTTGAGAAGGAAACCATGGGGACGAATTTTCCGTACACTGGGGAAACTGATAAGCAAATGGGTGATCAGTTGCCAATAGTTGAAGAAATCGGTTCGGAAGAAATTCTAGCTGCAGCTTGTGACGACGATCCAGATCGTTTAAAATTGCCTCAGCTTTTTAATGAGATGTGCAAACTTGTGGAAGGAACTGCCCCGCAGTGTTCTTTTGAAACTATCTGCGAAGACGTACTAAGCATGACTCGCCCCCCTGTGCAACAAAATCCTCCTACTTCAGCACAGCCAACACTAAATGCAGATAAACAACCAAGAGATGAGTCAAAGAGCACAAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006338 GO:0006355 GO:0006996 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008283 GO:0009719 GO:0009725 GO:0009733 GO:0009735 GO:0009736 GO:0009739 GO:0009755 GO:0009787 GO:0009788 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010646 GO:0010648 GO:0016043 GO:0019219 GO:0019222 GO:0022622 GO:0023051 GO:0023052 GO:0023057 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048364 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051239 GO:0051252 GO:0051253 GO:0051276 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0071840 GO:0080090 GO:0097159 GO:0099402 GO:1901363 GO:1901419 GO:1901420 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:1905957 GO:1905958 GO:2000023 GO:2000026 GO:2000069 GO:2000112 GO:2000113 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko05165 ko05203 map05165 map05203

Pfam Domains

Protein Families

CHDCT2 Chromo DUF1086 DUF1087 Helicase_C PHD SNF2_N

Protein Analysis

1317

Amino Acids

150.46

Weight (kDa)

5.47

Isoelectric Point (pI)

45.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PHD	PF00628	67 - 108	1.1e-07	PHD-finger
Chromo	PF00385	137 - 165	2.4e-08	Chromo (CHRromatin Organisation MOdifier) domain
Chromo	PF00385	206 - 253	1.7e-13	Chromo (CHRromatin Organisation MOdifier) domain
ResIII	PF04851	297 - 477	1.2e-08	Type III restriction enzyme, res subunit
SNF2-rel_dom	PF00176	300 - 495	1.7e-52	SNF2-related domain
SNF2-rel_dom	PF00176	498 - 564	1.7e-10	SNF2-related domain
HDA2-3	PF11496	575 - 729	1.1e-08	Class II histone deacetylase complex subunits 2 and 3
Helicase_C	PF00271	588 - 701	1e-24	Helicase conserved C-terminal domain
DUF1087	PF06465	824 - 882	1.7e-22	CHD subfamily II, DUF1087
CHDII_SANT-like	PF06461	919 - 1051	4.4e-51	CHD subfamily II, SANT-like domain
HTH_CHD1_Hrp3	PF23588	1066 - 1104	8.1e-06	ATP-dependent helicase CHD1-2/hrp3 HTH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0002228)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25170 AT2G25170 AT2G25170 AT2G25170 AT4G31900 AT4G31900 AT4G31900
fragaria_vesca	FvH4_2g40920
malus_domestica	MD08G1058800.v1.1 MD15G1037700.v1.1
prunus_persica	Prupe.1G391600_v2.0.a1
pyrus_communis	pycom08g04860 pycom08g04870 pycom15g03490
rosa_chinensis	RchiOBHm_Chr3g0455421 RchiOBHm_Chr6g0299661
rosa_laevigata	RLG00000011399 RLG00000025364
rosa_multiflora	Rmu_co8019708.1_g000001 Rmu_co8099568.1_g000001 Rmu_sc0022216.1_g000002 Rmu_sc0024261.1_g000001 Rmu_sc0024262.1_g000001
rosa_roxburghii	Rroxscaffold_6G00424300 Rroxscaffold_7G00168470
rosa_rugosa	Rorug03G0007200 Rorug03G0007300 Rorug03G0007400 Rorug04G0013500 Rorug06G0291400
rosa_samantha	Rh3AG066700 Rh3BG069100 Rh3CG067500 Rh3DG069000 Rh5AG515500 Rh6AG402100 Rh6BG410600 Rh6CG416300 Rh6CG416400 Rh6DG403500
rosa_wichuraiana	Rw2G021110 Rw3G005270 Rw6G035200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	93
Acc16I	TGCGCA	2 cut(s)	65, 1667
Acc36I	ACCTGC	1 cut(s)	3325
AccB1I	GGYRCC	1 cut(s)	1099
AccB7I	CCANNNNNTGG	1 cut(s)	2741
AccII	CGCG	2 cut(s)	523, 2361
AccIII	TCCGGA	1 cut(s)	316
AciI	CCGC	5 cut(s)	383, 521, 1148, 2649, 3812
AclI	AACGTT	1 cut(s)	1064
AclWI	GGATC	9 cut(s)	110, 475, 488, 622, 635, 2275, 2639, 3437, 3740
AcuI	CTGAAG	4 cut(s)	1418, 2721, 3390, 3873
AdeI	CACNNNGTG	1 cut(s)	1816
AfaI	GTAC	5 cut(s)	1394, 1870, 3069, 3653, 3846
AfiI	CCNNNNNNNGG	9 cut(s)	125, 126, 286, 337, 2741, 3047, 3329, 3334, 3656
AflII	CTTAAG	1 cut(s)	1796
AflIII	ACRYGT	1 cut(s)	1842
AjiI	CACGTC	1 cut(s)	184
AjnI	CCWGG	9 cut(s)	139, 932, 1964, 2235, 3130, 3172, 3282, 3328, 3376
AjuI	GAANNNNNNNTTGG	2 cut(s)	2174, 2206
AloI	GAACNNNNNNTCC	2 cut(s)	3427, 3459
Alw21I	GWGCWC	6 cut(s)	151, 889, 1633, 2092, 3358, 3944
Alw26I	GTCTC	3 cut(s)	233, 1355, 1918
Alw44I	GTGCAC	2 cut(s)	885, 1629
AlwI	GGATC	9 cut(s)	110, 475, 488, 622, 635, 2275, 2639, 3437, 3740
Aor13HI	TCCGGA	1 cut(s)	316
AoxI	GGCC	1 cut(s)	2421
ApaLI	GTGCAC	2 cut(s)	885, 1629
ApeKI	GCWGC	8 cut(s)	61, 1560, 1801, 2336, 2492, 3386, 3728, 3731
AseI	ATTAAT	1 cut(s)	570
Asp700I	GAANNNNTTC	3 cut(s)	2749, 2805, 3720
AspLEI	GCGC	3 cut(s)	66, 1668, 2569
AspS9I	GGNCC	3 cut(s)	936, 2732, 3280
AsuHPI	GGTGA	6 cut(s)	224, 656, 1501, 1507, 2128, 3692
AvaII	GGWCC	3 cut(s)	936, 2732, 3280
BaeGI	GKGCMC	4 cut(s)	889, 1102, 1633, 1812
BamHI	GGATCC	2 cut(s)	480, 627
BanI	GGYRCC	1 cut(s)	1099
BanII	GRGCYC	3 cut(s)	151, 332, 2092
BauI	CACGAG	1 cut(s)	2139
BbsI	GAAGAC	7 cut(s)	555, 1029, 1866, 2643, 2954, 3468, 3846
Bbv12I	GWGCWC	6 cut(s)	151, 889, 1633, 2092, 3358, 3944
BbvCI	CCTCAGC	1 cut(s)	3768
BbvI	GCAGC	8 cut(s)	48, 1572, 1813, 2323, 2479, 3373, 3715, 3743
BciT130I	CCWGG	9 cut(s)	141, 934, 1966, 2237, 3132, 3174, 3284, 3330, 3378
BclI	TGATCA	3 cut(s)	2034, 3205, 3682
BcoDI	GTCTC	3 cut(s)	233, 1355, 1918
BfaI	CTAG	9 cut(s)	69, 768, 1043, 1856, 1989, 2085, 2246, 3495, 3725
BfmI	CTRYAG	4 cut(s)	32, 2493, 2754, 3729
BfrI	CTTAAG	1 cut(s)	1796
BfuAI	ACCTGC	1 cut(s)	3325
BglII	AGATCT	2 cut(s)	770, 2068
BisI	GCNGC	8 cut(s)	62, 1561, 1802, 2337, 2493, 3387, 3729, 3732
BlsI	GCNGC	8 cut(s)	63, 1562, 1803, 2338, 2494, 3388, 3730, 3733
BmcAI	AGTACT	1 cut(s)	1394
Bme1390I	CCNGG	9 cut(s)	141, 934, 1966, 2237, 3132, 3174, 3284, 3330, 3378
Bme18I	GGWCC	3 cut(s)	936, 2732, 3280
BmgBI	CACGTC	1 cut(s)	184
BmgT120I	GGNCC	3 cut(s)	936, 2732, 3280
BmiI	GGNNCC	7 cut(s)	291, 482, 629, 1053, 1101, 2481, 3436
BmrFI	CCNGG	9 cut(s)	141, 934, 1966, 2237, 3132, 3174, 3284, 3330, 3378
BmrI	ACTGGG	2 cut(s)	712, 3666
BmsI	GCATC	9 cut(s)	385, 802, 901, 1019, 1468, 1711, 2154, 2323, 3496
BmuI	ACTGGG	2 cut(s)	712, 3666
BoxI	GACNNNNGTC	1 cut(s)	2505
BpiI	GAAGAC	7 cut(s)	555, 1029, 1866, 2643, 2954, 3468, 3846
BplI	GAGNNNNNCTC	2 cut(s)	3528, 3560
BpmI	CTGGAG	1 cut(s)	900
Bpu10I	CCTNAGC	3 cut(s)	150, 3429, 3768
BpuEI	CTTGAG	2 cut(s)	1715, 3641
Bsa29I	ATCGAT	1 cut(s)	1942
BsaBI	GATNNNNATC	4 cut(s)	114, 2055, 2266, 3750
BsaJI	CCNNGG	5 cut(s)	3172, 3283, 3328, 3329, 3633
BsaWI	WCCGGW	2 cut(s)	316, 624
BsaXI	ACNNNNNCTCC	4 cut(s)	1411, 1441, 3408, 3438
Bsc4I	CCNNNNNNNGG	9 cut(s)	125, 126, 286, 337, 2741, 3047, 3329, 3334, 3656
Bse1I	ACTGG	8 cut(s)	136, 707, 763, 1400, 1426, 1713, 3446, 3661
Bse3DI	GCAATG	1 cut(s)	469
Bse8I	GATNNNNATC	4 cut(s)	114, 2055, 2266, 3750
BseAI	TCCGGA	1 cut(s)	316
BseBI	CCWGG	9 cut(s)	141, 934, 1966, 2237, 3132, 3174, 3284, 3330, 3378
BseCI	ATCGAT	1 cut(s)	1942
BseDI	CCNNGG	5 cut(s)	3172, 3283, 3328, 3329, 3633
BseGI	GGATG	9 cut(s)	10, 391, 892, 1453, 2689, 2716, 2907, 2914, 3559
BseJI	GATNNNNATC	4 cut(s)	114, 2055, 2266, 3750
BseLI	CCNNNNNNNGG	9 cut(s)	125, 126, 286, 337, 2741, 3047, 3329, 3334, 3656
BseMI	GCAATG	1 cut(s)	469
BseMII	CTCAG	5 cut(s)	164, 477, 1911, 3443, 3782
BseNI	ACTGG	8 cut(s)	136, 707, 763, 1400, 1426, 1713, 3446, 3661
BseRI	GAGGAG	4 cut(s)	282, 596, 1419, 2489
BseSI	GKGCMC	4 cut(s)	889, 1102, 1633, 1812
BseXI	GCAGC	8 cut(s)	48, 1572, 1813, 2323, 2479, 3373, 3715, 3743
BseYI	CCCAGC	1 cut(s)	2369
BsgI	GTGCAG	1 cut(s)	2817
Bsh1236I	CGCG	2 cut(s)	523, 2361
BshFI	GGCC	1 cut(s)	2423
BshNI	GGYRCC	1 cut(s)	1099
BshVI	ATCGAT	1 cut(s)	1942
BsiHKAI	GWGCWC	6 cut(s)	151, 889, 1633, 2092, 3358, 3944
BsiSI	CCGG	2 cut(s)	317, 625
BslFI	GGGAC	6 cut(s)	142, 468, 987, 2387, 3023, 3652
BslI	CCNNNNNNNGG	9 cut(s)	125, 126, 286, 337, 2741, 3047, 3329, 3334, 3656
BsmAI	GTCTC	3 cut(s)	233, 1355, 1918
BsmBI	CGTCTC	1 cut(s)	1355
BsmFI	GGGAC	6 cut(s)	142, 468, 987, 2387, 3023, 3652
BsmI	GAATGC	2 cut(s)	597, 701
BsnI	GGCC	1 cut(s)	2423
Bsp1286I	GDGCHC	9 cut(s)	151, 332, 889, 1102, 1633, 1812, 2092, 3358, 3944
Bsp13I	TCCGGA	1 cut(s)	316
Bsp1407I	TGTACA	1 cut(s)	1868
Bsp19I	CCATGG	1 cut(s)	3633
Bsp68I	TCGCGA	1 cut(s)	2361
BspACI	CCGC	5 cut(s)	383, 521, 1148, 2649, 3812
BspANI	GGCC	1 cut(s)	2423
BspCNI	CTCAG	5 cut(s)	163, 478, 1912, 3442, 3781
BspDI	ATCGAT	1 cut(s)	1942
BspEI	TCCGGA	1 cut(s)	316
BspFNI	CGCG	2 cut(s)	523, 2361
BspHI	TCATGA	2 cut(s)	1509, 3208
BspLI	GGNNCC	7 cut(s)	291, 482, 629, 1053, 1101, 2481, 3436
BspMAI	CTGCAG	4 cut(s)	36, 2497, 2758, 3733
BspMI	ACCTGC	1 cut(s)	3325
BspPI	GGATC	9 cut(s)	110, 475, 488, 622, 635, 2275, 2639, 3437, 3740
BspQI	GCTCTTC	4 cut(s)	139, 791, 1138, 2235
BspT107I	GGYRCC	1 cut(s)	1099
BspTI	CTTAAG	1 cut(s)	1796
BsrDI	GCAATG	1 cut(s)	469
BsrGI	TGTACA	1 cut(s)	1868
BsrI	ACTGG	8 cut(s)	136, 707, 763, 1400, 1426, 1713, 3446, 3661
BssECI	CCNNGG	5 cut(s)	3172, 3283, 3328, 3329, 3633
BssSI	CACGAG	1 cut(s)	2139
BssT1I	CCWWGG	1 cut(s)	3633
Bst2BI	CACGAG	1 cut(s)	2139
Bst2UI	CCWGG	9 cut(s)	141, 934, 1966, 2237, 3132, 3174, 3284, 3330, 3378
Bst4CI	ACNGT	8 cut(s)	379, 619, 852, 863, 1868, 2032, 2504, 2558
Bst6I	CTCTTC	8 cut(s)	139, 791, 1138, 1437, 2235, 2466, 2600, 3529
BstAFI	CTTAAG	1 cut(s)	1796
BstAPI	GCANNNNNTGC	3 cut(s)	260, 1816, 3116
BstAUI	TGTACA	1 cut(s)	1868
BstC8I	GCNNGC	9 cut(s)	508, 637, 1235, 1483, 1565, 1670, 2935, 3228, 3261
BstDEI	CTNAG	9 cut(s)	150, 264, 486, 1527, 1920, 2175, 3429, 3768, 3848
BstDSI	CCRYGG	1 cut(s)	3633
BstENI	CCTNNNNNAGG	2 cut(s)	3045, 3327
BstF5I	GGATG	9 cut(s)	10, 391, 892, 1453, 2689, 2716, 2907, 2914, 3559
BstFNI	CGCG	2 cut(s)	523, 2361
BstHHI	GCGC	3 cut(s)	66, 1668, 2569
BstMAI	GTCTC	3 cut(s)	233, 1355, 1918
BstMWI	GCNNNNNNNGC	9 cut(s)	260, 529, 1007, 1097, 1807, 1816, 3116, 3538, 3858
BstNI	CCWGG	9 cut(s)	141, 934, 1966, 2237, 3132, 3174, 3284, 3330, 3378
BstNSI	RCATGY	5 cut(s)	246, 510, 1846, 3230, 3362
BstPAI	GACNNNNGTC	1 cut(s)	2505
BstSCI	CCNGG	9 cut(s)	139, 932, 1964, 2235, 3130, 3172, 3282, 3328, 3376
BstSFI	CTRYAG	4 cut(s)	32, 2493, 2754, 3729
BstSLI	GKGCMC	4 cut(s)	889, 1102, 1633, 1812
BstUI	CGCG	2 cut(s)	523, 2361
BstV1I	GCAGC	8 cut(s)	48, 1572, 1813, 2323, 2479, 3373, 3715, 3743
BstV2I	GAAGAC	7 cut(s)	555, 1029, 1866, 2643, 2954, 3468, 3846
BstX2I	RGATCY	4 cut(s)	480, 627, 770, 2068
BstXI	CCANNNNNNTGG	1 cut(s)	406
BstYI	RGATCY	4 cut(s)	480, 627, 770, 2068
Bsu15I	ATCGAT	1 cut(s)	1942
BsuRI	GGCC	1 cut(s)	2423
BsuTUI	ATCGAT	1 cut(s)	1942
BtgI	CCRYGG	1 cut(s)	3633
BtgZI	GCGATG	2 cut(s)	325, 1391
BtrI	CACGTC	1 cut(s)	184
BtsCI	GGATG	9 cut(s)	10, 391, 892, 1453, 2689, 2716, 2907, 2914, 3559
BtsI	GCAGTG	2 cut(s)	887, 3821
BtsIMutI	CAGTG	5 cut(s)	887, 1301, 2037, 3654, 3821
BtuMI	TCGCGA	1 cut(s)	2361
BveI	ACCTGC	1 cut(s)	3325
Cac8I	GCNNGC	9 cut(s)	508, 637, 1235, 1483, 1565, 1670, 2935, 3228, 3261
CciI	TCATGA	2 cut(s)	1509, 3208
CfoI	GCGC	3 cut(s)	66, 1668, 2569
Cfr13I	GGNCC	3 cut(s)	936, 2732, 3280
ClaI	ATCGAT	1 cut(s)	1942
CsiI	ACCWGGT	1 cut(s)	3376
Csp6I	GTAC	5 cut(s)	1393, 1869, 3068, 3652, 3845
CviQI	GTAC	5 cut(s)	1393, 1869, 3068, 3652, 3845
DdeI	CTNAG	9 cut(s)	150, 264, 486, 1527, 1920, 2175, 3429, 3768, 3848
DraI	TTTAAA	2 cut(s)	2418, 3759
DraIII	CACNNNGTG	1 cut(s)	1816
Eam1104I	CTCTTC	8 cut(s)	139, 791, 1138, 1437, 2235, 2466, 2600, 3529
EarI	CTCTTC	8 cut(s)	139, 791, 1138, 1437, 2235, 2466, 2600, 3529
EciI	GGCGGA	1 cut(s)	398
Ecl136II	GAGCTC	2 cut(s)	149, 2090
Eco130I	CCWWGG	1 cut(s)	3633
Eco147I	AGGCCT	1 cut(s)	2423
Eco24I	GRGCYC	3 cut(s)	151, 332, 2092
Eco32I	GATATC	2 cut(s)	721, 1638
Eco47I	GGWCC	3 cut(s)	936, 2732, 3280
Eco53kI	GAGCTC	2 cut(s)	149, 2090
Eco57I	CTGAAG	4 cut(s)	1418, 2721, 3390, 3873
EcoICRI	GAGCTC	2 cut(s)	149, 2090
EcoNI	CCTNNNNNAGG	2 cut(s)	3045, 3327
EcoO109I	RGGNCCY	1 cut(s)	3280
EcoRI	GAATTC	1 cut(s)	1085
EcoRII	CCWGG	9 cut(s)	139, 932, 1964, 2235, 3130, 3172, 3282, 3328, 3376
EcoRV	GATATC	2 cut(s)	721, 1638
EcoT14I	CCWWGG	1 cut(s)	3633
EcoT22I	ATGCAT	1 cut(s)	256
EcoT38I	GRGCYC	3 cut(s)	151, 332, 2092
ErhI	CCWWGG	1 cut(s)	3633
Esp3I	CGTCTC	1 cut(s)	1355
FaqI	GGGAC	6 cut(s)	142, 468, 987, 2387, 3023, 3652
FauI	CCCGC	3 cut(s)	528, 2656, 3819
FauNDI	CATATG	2 cut(s)	1273, 2953
FbaI	TGATCA	3 cut(s)	2034, 3205, 3682
Fnu4HI	GCNGC	8 cut(s)	62, 1561, 1802, 2337, 2493, 3387, 3729, 3732
FokI	GGATG	9 cut(s)	17, 398, 879, 1460, 2696, 2723, 2914, 2921, 3566
FriOI	GRGCYC	3 cut(s)	151, 332, 2092
Fsp4HI	GCNGC	8 cut(s)	62, 1561, 1802, 2337, 2493, 3387, 3729, 3732
FspBI	CTAG	9 cut(s)	69, 768, 1043, 1856, 1989, 2085, 2246, 3495, 3725
FspI	TGCGCA	2 cut(s)	65, 1667
GlaI	GCGC	3 cut(s)	65, 1667, 2568
GluI	GCNGC	8 cut(s)	62, 1561, 1802, 2337, 2493, 3387, 3729, 3732
GsaI	CCCAGC	1 cut(s)	2373
GsuI	CTGGAG	1 cut(s)	900
HaeIII	GGCC	1 cut(s)	2423
HapII	CCGG	2 cut(s)	317, 625
HhaI	GCGC	3 cut(s)	66, 1668, 2569
Hin6I	GCGC	3 cut(s)	64, 1666, 2567
HinP1I	GCGC	3 cut(s)	64, 1666, 2567
HincII	GTYRAC	4 cut(s)	541, 622, 2500, 3271
HindII	GTYRAC	4 cut(s)	541, 622, 2500, 3271
HindIII	AAGCTT	1 cut(s)	2967
HpaI	GTTAAC	1 cut(s)	541
HpaII	CCGG	2 cut(s)	317, 625
HphI	GGTGA	6 cut(s)	224, 656, 1501, 1507, 2128, 3692
Hpy166II	GTNNAC	9 cut(s)	272, 541, 622, 887, 1631, 2500, 3271, 3451, 3654
Hpy8I	GTNNAC	9 cut(s)	272, 541, 622, 887, 1631, 2500, 3271, 3451, 3654
Hpy99I	CGWCG	3 cut(s)	1623, 3487, 3746
HpyCH4III	ACNGT	8 cut(s)	379, 619, 852, 863, 1868, 2032, 2504, 2558
HpyCH4IV	ACGT	7 cut(s)	183, 1064, 3066, 3156, 3411, 3482, 3843
HpyF10VI	GCNNNNNNNGC	9 cut(s)	260, 529, 1007, 1097, 1807, 1816, 3116, 3538, 3858
HpyF3I	CTNAG	9 cut(s)	150, 264, 486, 1527, 1920, 2175, 3429, 3768, 3848
HpySE526I	ACGT	7 cut(s)	183, 1064, 3066, 3156, 3411, 3482, 3843
HspAI	GCGC	3 cut(s)	64, 1666, 2567
Kpn2I	TCCGGA	1 cut(s)	316
Ksp22I	TGATCA	3 cut(s)	2034, 3205, 3682
KspAI	GTTAAC	1 cut(s)	541
LguI	GCTCTTC	4 cut(s)	139, 791, 1138, 2235
LmnI	GCTCC	4 cut(s)	295, 1057, 1916, 3353
Lsp1109I	GCAGC	8 cut(s)	48, 1572, 1813, 2323, 2479, 3373, 3715, 3743
LweI	GCATC	9 cut(s)	385, 802, 901, 1019, 1468, 1711, 2154, 2323, 3496
MabI	ACCWGGT	1 cut(s)	3376
MaeI	CTAG	9 cut(s)	69, 768, 1043, 1856, 1989, 2085, 2246, 3495, 3725
MaeII	ACGT	7 cut(s)	183, 1064, 3066, 3156, 3411, 3482, 3843
MaeIII	GTNAC	8 cut(s)	362, 644, 1065, 1598, 2704, 3167, 3380, 3737
MfeI	CAATTG	1 cut(s)	2148
MflI	RGATCY	4 cut(s)	480, 627, 770, 2068
MhlI	GDGCHC	9 cut(s)	151, 332, 889, 1102, 1633, 1812, 2092, 3358, 3944
MlyI	GAGTC	7 cut(s)	1286, 1588, 3008, 3045, 3482, 3850, 3941
MmeI	TCCRAC	3 cut(s)	1827, 2188, 2370
Mph1103I	ATGCAT	1 cut(s)	256
MroI	TCCGGA	1 cut(s)	316
MroXI	GAANNNNTTC	3 cut(s)	2749, 2805, 3720
MslI	CAYNNNNRTG	3 cut(s)	1463, 2328, 3246
MspA1I	CMGCKG	1 cut(s)	2651
MspCI	CTTAAG	1 cut(s)	1796
MspI	CCGG	2 cut(s)	317, 625
MspR9I	CCNGG	9 cut(s)	141, 934, 1966, 2237, 3132, 3174, 3284, 3330, 3378
MunI	CAATTG	1 cut(s)	2148
Mva1269I	GAATGC	2 cut(s)	597, 701
MvaI	CCWGG	9 cut(s)	141, 934, 1966, 2237, 3132, 3174, 3284, 3330, 3378
MvnI	CGCG	2 cut(s)	523, 2361
MwoI	GCNNNNNNNGC	9 cut(s)	260, 529, 1007, 1097, 1807, 1816, 3116, 3538, 3858
NcoI	CCATGG	1 cut(s)	3633
NdeI	CATATG	2 cut(s)	1273, 2953
NlaIV	GGNNCC	7 cut(s)	291, 482, 629, 1053, 1101, 2481, 3436
NmeAIII	GCCGAG	1 cut(s)	3640
NmuCI	GTSAC	4 cut(s)	362, 644, 2704, 3737
NruI	TCGCGA	1 cut(s)	2361
NsbI	TGCGCA	2 cut(s)	65, 1667
NsiI	ATGCAT	1 cut(s)	256
NspI	RCATGY	5 cut(s)	246, 510, 1846, 3230, 3362
PaeI	GCATGC	2 cut(s)	510, 3230
PagI	TCATGA	2 cut(s)	1509, 3208
PasI	CCCWGGG	1 cut(s)	3329
PceI	AGGCCT	1 cut(s)	2423
PciI	ACATGT	1 cut(s)	1842
PciSI	GCTCTTC	4 cut(s)	139, 791, 1138, 2235
PcsI	WCGNNNNNNNCGW	1 cut(s)	3647
PctI	GAATGC	2 cut(s)	597, 701
PdmI	GAANNNNTTC	3 cut(s)	2749, 2805, 3720
PflFI	GACNNNGTC	2 cut(s)	1028, 1347
PflMI	CCANNNNNTGG	1 cut(s)	2741
PkrI	GCNGC	8 cut(s)	63, 1562, 1803, 2338, 2494, 3388, 3730, 3733
PleI	GAGTC	7 cut(s)	1286, 1588, 3008, 3045, 3481, 3850, 3940
PpsI	GAGTC	7 cut(s)	1286, 1588, 3008, 3045, 3481, 3850, 3940
PpuMI	RGGWCCY	1 cut(s)	3280
PscI	ACATGT	1 cut(s)	1842
PshAI	GACNNNNGTC	1 cut(s)	2505
PshBI	ATTAAT	1 cut(s)	570
PsiI	TTATAA	1 cut(s)	93
Psp124BI	GAGCTC	2 cut(s)	151, 2092
Psp1406I	AACGTT	1 cut(s)	1064
Psp5II	RGGWCCY	1 cut(s)	3280
Psp6I	CCWGG	9 cut(s)	139, 932, 1964, 2235, 3130, 3172, 3282, 3328, 3376
PspFI	CCCAGC	1 cut(s)	2369
PspGI	CCWGG	9 cut(s)	139, 932, 1964, 2235, 3130, 3172, 3282, 3328, 3376
PspN4I	GGNNCC	7 cut(s)	291, 482, 629, 1053, 1101, 2481, 3436
PspPI	GGNCC	3 cut(s)	936, 2732, 3280
PspPPI	RGGWCCY	1 cut(s)	3280
PsrI	GAACNNNNNNTAC	2 cut(s)	1527, 1559
PstI	CTGCAG	4 cut(s)	36, 2497, 2758, 3733
PsuI	RGATCY	4 cut(s)	480, 627, 770, 2068
PsyI	GACNNNGTC	2 cut(s)	1028, 1347
RruI	TCGCGA	1 cut(s)	2361
RsaI	GTAC	5 cut(s)	1394, 1870, 3069, 3653, 3846
RsaNI	GTAC	5 cut(s)	1393, 1869, 3068, 3652, 3845
RseI	CAYNNNNRTG	3 cut(s)	1463, 2328, 3246
SacI	GAGCTC	2 cut(s)	151, 2092
SapI	GCTCTTC	4 cut(s)	139, 791, 1138, 2235
SatI	GCNGC	8 cut(s)	62, 1561, 1802, 2337, 2493, 3387, 3729, 3732
Sau96I	GGNCC	3 cut(s)	936, 2732, 3280
ScaI	AGTACT	1 cut(s)	1394
SchI	GAGTC	7 cut(s)	1286, 1588, 3008, 3045, 3482, 3850, 3941
ScrFI	CCNGG	9 cut(s)	141, 934, 1966, 2237, 3132, 3174, 3284, 3330, 3378
SduI	GDGCHC	9 cut(s)	151, 332, 889, 1102, 1633, 1812, 2092, 3358, 3944
SexAI	ACCWGGT	1 cut(s)	3376
SfaNI	GCATC	9 cut(s)	385, 802, 901, 1019, 1468, 1711, 2154, 2323, 3496
SfcI	CTRYAG	4 cut(s)	32, 2493, 2754, 3729
SinI	GGWCC	3 cut(s)	936, 2732, 3280
SmiMI	CAYNNNNRTG	3 cut(s)	1463, 2328, 3246
SmlI	CTYRAG	3 cut(s)	1694, 1796, 3620
SmoI	CTYRAG	3 cut(s)	1694, 1796, 3620
SphI	GCATGC	2 cut(s)	510, 3230
SseBI	AGGCCT	1 cut(s)	2423
SsiI	CCGC	5 cut(s)	383, 521, 1148, 2649, 3812
SspI	AATATT	2 cut(s)	97, 1577
SspMI	CTAG	9 cut(s)	69, 768, 1043, 1856, 1989, 2085, 2246, 3495, 3725
SstI	GAGCTC	2 cut(s)	151, 2092
StuI	AGGCCT	1 cut(s)	2423
StyD4I	CCNGG	9 cut(s)	139, 932, 1964, 2235, 3130, 3172, 3282, 3328, 3376
StyI	CCWWGG	1 cut(s)	3633
TaaI	ACNGT	8 cut(s)	379, 619, 852, 863, 1868, 2032, 2504, 2558
TaiI	ACGT	7 cut(s)	186, 1067, 3069, 3159, 3414, 3485, 3846
TaqI	TCGA	5 cut(s)	601, 819, 1942, 2095, 2260
TaqII	GACCGA	1 cut(s)	93
TatI	WGTACW	2 cut(s)	1392, 1868
TscAI	CASTG	5 cut(s)	894, 1308, 2037, 3661, 3821
TseFI	GTSAC	4 cut(s)	362, 644, 2704, 3737
TseI	GCWGC	8 cut(s)	61, 1560, 1801, 2336, 2492, 3386, 3728, 3731
Tsp45I	GTSAC	4 cut(s)	362, 644, 2704, 3737
TspGWI	ACGGA	6 cut(s)	353, 2280, 2376, 2723, 3155, 3639
TspRI	CASTG	5 cut(s)	894, 1308, 2037, 3661, 3821
Tth111I	GACNNNGTC	2 cut(s)	1028, 1347
Van91I	CCANNNNNTGG	1 cut(s)	2741
Vha464I	CTTAAG	1 cut(s)	1796
VneI	GTGCAC	2 cut(s)	885, 1629
VpaK11BI	GGWCC	3 cut(s)	936, 2732, 3280
VspI	ATTAAT	1 cut(s)	570
XagI	CCTNNNNNAGG	2 cut(s)	3045, 3327
XbaI	TCTAGA	2 cut(s)	767, 3494
XceI	RCATGY	5 cut(s)	246, 510, 1846, 3230, 3362
XmnI	GAANNNNTTC	3 cut(s)	2749, 2805, 3720
XspI	CTAG	9 cut(s)	69, 768, 1043, 1856, 1989, 2085, 2246, 3495, 3725
ZrmI	AGTACT	1 cut(s)	1394
Zsp2I	ATGCAT	1 cut(s)	256

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.