Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001203

Physical Location & Seq

Genomic Coordinates Forward (+)

3854388 .. 3857243

Gene Structure 2856 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G11950.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGGAAGATAATCAGCGAAGCAGATTCAGAAAAATCTGTGTCTTTTGCGGAAGCCACTCTGGTCACAGAGAAGTTTTCAGTGATGCTGCCATCGAACTCGGCAATGAACTCGTGAAGAGGAAGATAGATTTGGTTTATGGAGGAGGAAGTGTTGGATTGATGGGTTTGATATCCAGGAGAGTCTATGAAGGTGGTTTACATGTACTTGGAATCATTCCCAAAGCTTTGATGCCAATTGAGATATCTGGTGAGACTGTGGGAGATGTAAGAGTTGTTGCAGACATGCATGAGCGAAAGGCTGCAATGGCACAGGAAGCTGAGGCCTTCATTGCACTCCCTGGAGGTTATGGAACAATGGAGGAGCTGTTGGAGATGATAACATGGTCACAACTTGGTATCCATAAGAAGACGGTTGGTCTATTGAATGTTGATGGGTACTATAACAATTTGCTTGCTTTATTTGATACCGGTGTCGAAGAAGGTTTTATCAAGCCAGGTGCACGTAACATTGTGGTTTCTGCTCCAACAGCCAAAGAGCTTATGGAGAAGATGGAGGAATATACTCCTTCACACATGCATGTTGCATCGCACGAAAGCTGGAAAGTTGAAGAACTCGGAGATTACCCGGGACAAGAAAACAAGCCGCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046983

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lysine_decarbox

Protein Analysis

216

Amino Acids

23.83

Weight (kDa)

5.4

Isoelectric Point (pI)

42.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LDcluster4	PF18306	17 - 123	1.9e-10	SLOG cluster4 family
Lysine_decarbox	PF03641	54 - 184	3.6e-46	Possible lysine decarboxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001203)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11950 AT5G11950 AT5G11950 AT5G11950 AT5G26140 AT5G26140 AT5G26140
fragaria_vesca	FvH4_2g31610 FvH4_2g31610 FvH4_2g31610 FvH4_2g38680 FvH4_2g38680 FvH4_3g04550 FvH4_3g04550 FvH4_3g04550
malus_domestica	MD03G1005300.v1.1 MD08G1014400.v1.1 MD08G1064800.v1.1 MD11G1007900.v1.1 MD15G1013800.v1.1 MD15G1056800.v1.1
prunus_persica	Prupe.1G367500_v2.0.a1 Prupe.1G409400_v2.0.a1 Prupe.1G409400_v2.0.a1 Prupe.1G409400_v2.0.a1 Prupe.1G409400_v2.0.a1 Prupe.1G409400_v2.0.a1 Prupe.1G409400_v2.0.a1 Prupe.1G409400_v2.0.a1 Prupe.6G005100_v2.0.a1 Prupe.6G005100_v2.0.a1
pyrus_communis	pycom03g00550 pycom08g01300 pycom08g05310 pycom11g00540 pycom15g01200 pycom15g05320
rosa_chinensis	RchiOBHm_Chr6g0302631 RchiOBHm_Chr6g0311211
rosa_laevigata	RLG00000010427 RLG00000011154
rosa_multiflora	Rmu_co8501517.1_g000001 Rmu_sc0005455.1_g000005
rosa_roxburghii	Rroxscaffold_7G00157900 Rroxscaffold_7G00165490
rosa_rugosa	Rorug06G0315600 Rorug06G0386400 Rorug06G0386500
rosa_samantha	Rh6AG428900 Rh6BG473600 Rh6BG511200 Rh6CG441200 Rh6CG517000 Rh6DG503500
rosa_wichuraiana	Rw6G037120 Rw6G043590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	48, 644
AfaI	GTAC	2 cut(s)	204, 437
AflIII	ACRYGT	1 cut(s)	199
AgeI	ACCGGT	1 cut(s)	467
AgsI	TTSAA	2 cut(s)	424, 608
AhdI	GACNNNNNGTC	1 cut(s)	414
AjnI	CCWGG	3 cut(s)	173, 337, 493
AjuI	GAANNNNNNNTTGG	2 cut(s)	113, 145
AluBI	AGCT	5 cut(s)	224, 317, 364, 538, 597
AluI	AGCT	5 cut(s)	224, 317, 364, 538, 597
Alw21I	GWGCWC	1 cut(s)	502
Alw26I	GTCTC	1 cut(s)	245
Alw44I	GTGCAC	1 cut(s)	498
Ama87I	CYCGRG	1 cut(s)	625
AoxI	GGCC	1 cut(s)	321
ApaLI	GTGCAC	1 cut(s)	498
ApeKI	GCWGC	2 cut(s)	86, 299
AsiGI	ACCGGT	1 cut(s)	467
AsuC2I	CCSGG	2 cut(s)	626, 627
AsuHPI	GGTGA	1 cut(s)	260
AvaI	CYCGRG	1 cut(s)	625
BaeGI	GKGCMC	1 cut(s)	502
BaeI	ACNNNNGTAYC	2 cut(s)	456, 489
BarI	GAAGNNNNNNTAC	2 cut(s)	180, 212
BauI	CACGAG	1 cut(s)	110
BbsI	GAAGAC	1 cut(s)	413
Bbv12I	GWGCWC	1 cut(s)	502
BbvCI	CCTCAGC	1 cut(s)	318
BbvI	GCAGC	2 cut(s)	73, 286
BccI	CCATC	4 cut(s)	98, 154, 425, 544
BcgI	CGANNNNNNTGC	2 cut(s)	91, 125
BciT130I	CCWGG	3 cut(s)	175, 339, 495
BciVI	GTATCC	1 cut(s)	407
BcnI	CCSGG	2 cut(s)	626, 627
BcoDI	GTCTC	1 cut(s)	245
BfuI	GTATCC	1 cut(s)	407
BisI	GCNGC	3 cut(s)	87, 300, 644
BlsI	GCNGC	3 cut(s)	88, 301, 645
Bme1390I	CCNGG	5 cut(s)	175, 339, 495, 626, 627
BmeRI	GACNNNNNGTC	1 cut(s)	414
BmeT110I	CYCGRG	1 cut(s)	625
BmrFI	CCNGG	5 cut(s)	175, 339, 495, 626, 627
BmsI	GCATC	3 cut(s)	73, 219, 593
BpiI	GAAGAC	1 cut(s)	413
BpmI	CTGGAG	1 cut(s)	360
Bpu10I	CCTNAGC	1 cut(s)	318
BpuMI	CCSGG	2 cut(s)	626, 627
BsaAI	YACGTR	1 cut(s)	503
BsaJI	CCNNGG	2 cut(s)	337, 625
BsaWI	WCCGGW	1 cut(s)	467
BsaXI	ACNNNNNCTCC	4 cut(s)	135, 165, 350, 380
Bse118I	RCCGGY	1 cut(s)	467
Bse3DI	GCAATG	3 cut(s)	109, 309, 327
BseBI	CCWGG	3 cut(s)	175, 339, 495
BseDI	CCNNGG	2 cut(s)	337, 625
BseMI	GCAATG	3 cut(s)	109, 309, 327
BseMII	CTCAG	1 cut(s)	309
BseRI	GAGGAG	2 cut(s)	156, 374
BseSI	GKGCMC	1 cut(s)	502
BseXI	GCAGC	2 cut(s)	73, 286
BshFI	GGCC	1 cut(s)	323
BshTI	ACCGGT	1 cut(s)	467
BsiHKAI	GWGCWC	1 cut(s)	502
BsiHKCI	CYCGRG	1 cut(s)	625
BsiSI	CCGG	2 cut(s)	468, 626
BslFI	GGGAC	1 cut(s)	642
BsmAI	GTCTC	1 cut(s)	245
BsmFI	GGGAC	1 cut(s)	642
BsnI	GGCC	1 cut(s)	323
BsoBI	CYCGRG	1 cut(s)	625
Bsp1286I	GDGCHC	1 cut(s)	502
BspACI	CCGC	2 cut(s)	48, 644
BspANI	GGCC	1 cut(s)	323
BspCNI	CTCAG	1 cut(s)	310
BsrDI	GCAATG	3 cut(s)	109, 309, 327
BsrFI	RCCGGY	1 cut(s)	467
BssAI	RCCGGY	1 cut(s)	467
BssECI	CCNNGG	2 cut(s)	337, 625
BssSI	CACGAG	1 cut(s)	110
Bst2BI	CACGAG	1 cut(s)	110
Bst2UI	CCWGG	3 cut(s)	175, 339, 495
Bst4CI	ACNGT	2 cut(s)	256, 412
Bst6I	CTCTTC	1 cut(s)	110
BstBAI	YACGTR	1 cut(s)	503
BstC8I	GCNNGC	1 cut(s)	453
BstDEI	CTNAG	1 cut(s)	318
BstMAI	GTCTC	1 cut(s)	245
BstMWI	GCNNNNNNNGC	4 cut(s)	305, 314, 329, 527
BstNI	CCWGG	3 cut(s)	175, 339, 495
BstNSI	RCATGY	4 cut(s)	203, 286, 577, 581
BstSCI	CCNGG	5 cut(s)	173, 337, 493, 624, 625
BstSLI	GKGCMC	1 cut(s)	502
BstV1I	GCAGC	2 cut(s)	73, 286
BstV2I	GAAGAC	1 cut(s)	413
BsuI	GTATCC	1 cut(s)	407
BsuRI	GGCC	1 cut(s)	323
BtgZI	GCGATG	1 cut(s)	570
BtsIMutI	CAGTG	1 cut(s)	85
Cac8I	GCNNGC	1 cut(s)	453
Cfr10I	RCCGGY	1 cut(s)	467
Cfr9I	CCCGGG	1 cut(s)	625
Csp6I	GTAC	2 cut(s)	203, 436
CspAI	ACCGGT	1 cut(s)	467
CviAII	CATG	6 cut(s)	200, 283, 287, 381, 574, 578
CviQI	GTAC	2 cut(s)	203, 436
DdeI	CTNAG	1 cut(s)	318
DriI	GACNNNNNGTC	1 cut(s)	414
Eam1104I	CTCTTC	1 cut(s)	110
Eam1105I	GACNNNNNGTC	1 cut(s)	414
EarI	CTCTTC	1 cut(s)	110
Eco147I	AGGCCT	1 cut(s)	323
Eco32I	GATATC	2 cut(s)	171, 243
Eco88I	CYCGRG	1 cut(s)	625
EcoRII	CCWGG	3 cut(s)	173, 337, 493
EcoRV	GATATC	2 cut(s)	171, 243
EcoT22I	ATGCAT	2 cut(s)	288, 579
FaeI	CATG	6 cut(s)	203, 286, 290, 384, 577, 581
FaqI	GGGAC	1 cut(s)	642
FatI	CATG	6 cut(s)	199, 282, 286, 380, 573, 577
Fnu4HI	GCNGC	3 cut(s)	87, 300, 644
Fsp4HI	GCNGC	3 cut(s)	87, 300, 644
GluI	GCNGC	3 cut(s)	87, 300, 644
GsuI	CTGGAG	1 cut(s)	360
HaeIII	GGCC	1 cut(s)	323
HapII	CCGG	2 cut(s)	468, 626
Hin1II	CATG	6 cut(s)	203, 286, 290, 384, 577, 581
HindIII	AAGCTT	1 cut(s)	222
HinfI	GANTC	3 cut(s)	24, 180, 210
HpaII	CCGG	2 cut(s)	468, 626
HphI	GGTGA	1 cut(s)	260
Hpy166II	GTNNAC	2 cut(s)	197, 500
Hpy188I	TCNGA	2 cut(s)	29, 617
Hpy188III	TCNNGA	1 cut(s)	112
Hpy8I	GTNNAC	2 cut(s)	197, 500
HpyAV	CCTTC	4 cut(s)	182, 334, 473, 576
HpyCH4III	ACNGT	2 cut(s)	256, 412
HpyCH4IV	ACGT	1 cut(s)	502
HpyCH4V	TGCA	7 cut(s)	278, 286, 302, 332, 500, 577, 584
HpyF10VI	GCNNNNNNNGC	4 cut(s)	305, 314, 329, 527
HpyF3I	CTNAG	1 cut(s)	318
HpySE526I	ACGT	1 cut(s)	502
Hsp92II	CATG	6 cut(s)	203, 286, 290, 384, 577, 581
LmnI	GCTCC	2 cut(s)	361, 526
Lsp1109I	GCAGC	2 cut(s)	73, 286
LweI	GCATC	3 cut(s)	73, 219, 593
MaeII	ACGT	1 cut(s)	502
MaeIII	GTNAC	3 cut(s)	62, 384, 503
MboII	GAAGA	7 cut(s)	17, 127, 133, 418, 488, 559, 620
MfeI	CAATTG	1 cut(s)	234
MhlI	GDGCHC	1 cut(s)	502
MluCI	AATT	2 cut(s)	234, 445
MlyI	GAGTC	1 cut(s)	189
MmeI	TCCRAC	3 cut(s)	133, 348, 548
MnlI	CCTC	7 cut(s)	111, 134, 137, 313, 335, 352, 547
Mph1103I	ATGCAT	2 cut(s)	288, 579
MslI	CAYNNNNRTG	1 cut(s)	576
MspI	CCGG	2 cut(s)	468, 626
MspR9I	CCNGG	5 cut(s)	175, 339, 495, 626, 627
MunI	CAATTG	1 cut(s)	234
MvaI	CCWGG	3 cut(s)	175, 339, 495
MwoI	GCNNNNNNNGC	4 cut(s)	305, 314, 329, 527
NciI	CCSGG	2 cut(s)	626, 627
NlaIII	CATG	6 cut(s)	203, 286, 290, 384, 577, 581
NmeAIII	GCCGAG	1 cut(s)	78
NmuCI	GTSAC	2 cut(s)	62, 384
NsiI	ATGCAT	2 cut(s)	288, 579
NspI	RCATGY	4 cut(s)	203, 286, 577, 581
PceI	AGGCCT	1 cut(s)	323
PciI	ACATGT	1 cut(s)	199
PfeI	GAWTC	2 cut(s)	24, 210
PfoI	TCCNGGA	1 cut(s)	173
PinAI	ACCGGT	1 cut(s)	467
PkrI	GCNGC	3 cut(s)	88, 301, 645
PleI	GAGTC	1 cut(s)	188
PpsI	GAGTC	1 cut(s)	188
Ppu21I	YACGTR	1 cut(s)	503
PscI	ACATGT	1 cut(s)	199
Psp6I	CCWGG	3 cut(s)	173, 337, 493
PspGI	CCWGG	3 cut(s)	173, 337, 493
RsaI	GTAC	2 cut(s)	204, 437
RsaNI	GTAC	2 cut(s)	203, 436
RseI	CAYNNNNRTG	1 cut(s)	576
SatI	GCNGC	3 cut(s)	87, 300, 644
SchI	GAGTC	1 cut(s)	189
ScrFI	CCNGG	5 cut(s)	175, 339, 495, 626, 627
SduI	GDGCHC	1 cut(s)	502
SfaNI	GCATC	3 cut(s)	73, 219, 593
SmaI	CCCGGG	1 cut(s)	627
SmiMI	CAYNNNNRTG	1 cut(s)	576
Sse9I	AATT	2 cut(s)	234, 445
SseBI	AGGCCT	1 cut(s)	323
SsiI	CCGC	2 cut(s)	48, 644
StuI	AGGCCT	1 cut(s)	323
StyD4I	CCNGG	5 cut(s)	173, 337, 493, 624, 625
TaaI	ACNGT	2 cut(s)	256, 412
TaiI	ACGT	1 cut(s)	505
TaqI	TCGA	2 cut(s)	93, 474
TasI	AATT	2 cut(s)	234, 445
TatI	WGTACW	1 cut(s)	202
TauI	GCSGC	1 cut(s)	646
TfiI	GAWTC	2 cut(s)	24, 210
TscAI	CASTG	1 cut(s)	85
TseFI	GTSAC	2 cut(s)	62, 384
TseI	GCWGC	2 cut(s)	86, 299
Tsp45I	GTSAC	2 cut(s)	62, 384
TspDTI	ATGAA	3 cut(s)	120, 201, 316
TspMI	CCCGGG	1 cut(s)	625
TspRI	CASTG	1 cut(s)	85
VneI	GTGCAC	1 cut(s)	498
XceI	RCATGY	4 cut(s)	203, 286, 577, 581
XcmI	CCANNNNNNNNNTGG	1 cut(s)	538
XmaI	CCCGGG	1 cut(s)	625
Zsp2I	ATGCAT	2 cut(s)	288, 579

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.