Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0001203

Physical Location & Seq

Genomic Coordinates Reverse (-)

1078656 .. 1081614

Gene Structure 2959 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1014400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGGAAAATCAGCAGCAGATTGCAAAGGAATCGAGATTCAGGCGTATCTGCGTTTTCTGTGGCAGCAGTGCTGGCAAGAACCCGAGCTACCAGCTTGCTGCCGTTCAACTCGGCAAAGAATTGGTTGAAAAACACATTGACTTGGTTTATGGAGGAGGAAGCATTGGGTTGATGGGTCAGATCTCTCAAGTTGTCTATGATGGCGGCCGCCACGTGTTGGGAGTAATTCCCACAACCCTCATGCCAAGAGAGATCACAGGAGAGTCAGTGGGAGAAATAAGAGCTGTATCAAGCATGCATCAACGCAAAGCAGAAATGGCTCGCCAAGCTGATGCATTCATTGCCTTGCCAGGTGGCTATGGGACCTTGGAAGAACTGTTGGAAATGATCACTTGGGCACAGTTGGGAATCCATGATAAGCCGGTGGGGTTGTTAAATGTGGATGGATACTACAACTCACTGCTATCGTTCATAGACAAGGCTGTGGACGAAGGTTTCATTGACCTTGCAGCTCGTCATATTATTGTCTCTGCCGAAACTCCCTGCGAACTCATGTGCAAAGAATATGCTCCAGAGCATTCCGGGCTGAGTTGGGAGATGGAGCAACAACTGGAATACAAGGCAAAGTCAGACATTGCACGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lysine_decarbox

Protein Analysis

215

Amino Acids

23.57

Weight (kDa)

5.27

Isoelectric Point (pI)

34.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LDcluster4	PF18306	21 - 128	1.6e-11	SLOG cluster4 family
Lysine_decarbox	PF03641	58 - 185	6.7e-46	Possible lysine decarboxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001203)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11950 AT5G11950 AT5G11950 AT5G11950 AT5G26140 AT5G26140 AT5G26140
fragaria_vesca	FvH4_2g31610 FvH4_2g31610 FvH4_2g31610 FvH4_2g38680 FvH4_2g38680 FvH4_3g04550 FvH4_3g04550 FvH4_3g04550
malus_domestica	MD03G1005300.v1.1 MD08G1014400.v1.1 MD08G1064800.v1.1 MD11G1007900.v1.1 MD15G1013800.v1.1 MD15G1056800.v1.1
prunus_persica	Prupe.1G367500_v2.0.a1 Prupe.1G409400_v2.0.a1 Prupe.1G409400_v2.0.a1 Prupe.1G409400_v2.0.a1 Prupe.1G409400_v2.0.a1 Prupe.1G409400_v2.0.a1 Prupe.1G409400_v2.0.a1 Prupe.1G409400_v2.0.a1 Prupe.6G005100_v2.0.a1 Prupe.6G005100_v2.0.a1
pyrus_communis	pycom03g00550 pycom08g01300 pycom08g05310 pycom11g00540 pycom15g01200 pycom15g05320
rosa_chinensis	RchiOBHm_Chr6g0302631 RchiOBHm_Chr6g0311211
rosa_laevigata	RLG00000010427 RLG00000011154
rosa_multiflora	Rmu_co8501517.1_g000001 Rmu_sc0005455.1_g000005
rosa_roxburghii	Rroxscaffold_7G00157900 Rroxscaffold_7G00165490
rosa_rugosa	Rorug06G0315600 Rorug06G0386400 Rorug06G0386500
rosa_samantha	Rh6AG428900 Rh6BG473600 Rh6BG511200 Rh6CG441200 Rh6CG517000 Rh6DG503500
rosa_wichuraiana	Rw6G037120 Rw6G043590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	217
AciI	CCGC	2 cut(s)	204, 208
AcoI	YGGCCR	1 cut(s)	205
AcvI	CACGTG	1 cut(s)	214
AfiI	CCNNNNNNNGG	1 cut(s)	217
AflIII	ACRYGT	1 cut(s)	213
AgsI	TTSAA	2 cut(s)	107, 128
AjnI	CCWGG	1 cut(s)	349
AluBI	AGCT	5 cut(s)	87, 94, 284, 329, 512
AluI	AGCT	5 cut(s)	87, 94, 284, 329, 512
Alw26I	GTCTC	1 cut(s)	532
Ama87I	CYCGRG	1 cut(s)	82
AoxI	GGCC	1 cut(s)	205
ApeKI	GCWGC	4 cut(s)	13, 63, 98, 509
AspS9I	GGNCC	1 cut(s)	363
AsuC2I	CCSGG	1 cut(s)	583
AvaI	CYCGRG	1 cut(s)	82
AvaII	GGWCC	1 cut(s)	363
BaeGI	GKGCMC	1 cut(s)	400
BbrPI	CACGTG	1 cut(s)	214
BbvI	GCAGC	4 cut(s)	25, 75, 85, 521
BccI	CCATC	4 cut(s)	166, 194, 437, 592
BceAI	ACGGC	1 cut(s)	86
BcgI	CGANNNNNNTGC	2 cut(s)	12, 46
BciT130I	CCWGG	1 cut(s)	351
BciVI	GTATCC	1 cut(s)	440
BclI	TGATCA	1 cut(s)	387
BcnI	CCSGG	1 cut(s)	583
BcoDI	GTCTC	1 cut(s)	532
BfuI	GTATCC	1 cut(s)	440
BglII	AGATCT	1 cut(s)	180
BisI	GCNGC	6 cut(s)	14, 64, 99, 205, 208, 510
BlsI	GCNGC	6 cut(s)	15, 65, 100, 206, 209, 511
Bme1390I	CCNGG	2 cut(s)	351, 583
Bme18I	GGWCC	1 cut(s)	363
BmeT110I	CYCGRG	1 cut(s)	82
BmgT120I	GGNCC	1 cut(s)	363
BmiI	GGNNCC	1 cut(s)	364
BmrFI	CCNGG	2 cut(s)	351, 583
BmsI	GCATC	2 cut(s)	307, 322
BpmI	CTGGAG	1 cut(s)	555
BpuEI	CTTGAG	1 cut(s)	171
BpuMI	CCSGG	1 cut(s)	583
BsaAI	YACGTR	1 cut(s)	214
BsaJI	CCNNGG	1 cut(s)	366
BsaXI	ACNNNNNCTCC	2 cut(s)	252, 282
Bsc4I	CCNNNNNNNGG	1 cut(s)	217
Bse118I	RCCGGY	1 cut(s)	421
Bse1I	ACTGG	1 cut(s)	615
Bse3DI	GCAATG	2 cut(s)	339, 633
BseBI	CCWGG	1 cut(s)	351
BseDI	CCNNGG	1 cut(s)	366
BseGI	GGATG	1 cut(s)	448
BseLI	CCNNNNNNNGG	1 cut(s)	217
BseMI	GCAATG	2 cut(s)	339, 633
BseMII	CTCAG	1 cut(s)	578
BseNI	ACTGG	1 cut(s)	615
BseRI	GAGGAG	1 cut(s)	168
BseSI	GKGCMC	1 cut(s)	400
BseX3I	CGGCCG	1 cut(s)	205
BseXI	GCAGC	4 cut(s)	25, 75, 85, 521
Bsh1285I	CGRYCG	1 cut(s)	208
BshFI	GGCC	1 cut(s)	207
BsiEI	CGRYCG	1 cut(s)	208
BsiHKCI	CYCGRG	1 cut(s)	82
BsiSI	CCGG	2 cut(s)	422, 582
BslFI	GGGAC	1 cut(s)	376
BslI	CCNNNNNNNGG	1 cut(s)	217
BsmAI	GTCTC	1 cut(s)	532
BsmFI	GGGAC	1 cut(s)	376
BsmI	GAATGC	2 cut(s)	335, 577
BsnI	GGCC	1 cut(s)	207
BsoBI	CYCGRG	1 cut(s)	82
Bsp1286I	GDGCHC	1 cut(s)	400
Bsp143I	GATC	3 cut(s)	180, 252, 387
BspACI	CCGC	2 cut(s)	204, 208
BspANI	GGCC	1 cut(s)	207
BspCNI	CTCAG	1 cut(s)	579
BspLI	GGNNCC	1 cut(s)	364
BsrDI	GCAATG	2 cut(s)	339, 633
BsrFI	RCCGGY	1 cut(s)	421
BsrI	ACTGG	1 cut(s)	615
BssAI	RCCGGY	1 cut(s)	421
BssECI	CCNNGG	1 cut(s)	366
BssMI	GATC	3 cut(s)	180, 252, 387
BssT1I	CCWWGG	1 cut(s)	366
Bst2UI	CCWGG	1 cut(s)	351
Bst4CI	ACNGT	2 cut(s)	378, 402
BstAPI	GCANNNNNTGC	1 cut(s)	341
BstBAI	YACGTR	1 cut(s)	214
BstC8I	GCNNGC	4 cut(s)	73, 96, 296, 322
BstDEI	CTNAG	1 cut(s)	587
BstF5I	GGATG	1 cut(s)	448
BstKTI	GATC	3 cut(s)	183, 255, 390
BstMAI	GTCTC	1 cut(s)	532
BstMBI	GATC	3 cut(s)	180, 252, 387
BstMCI	CGRYCG	1 cut(s)	208
BstMWI	GCNNNNNNNGC	5 cut(s)	72, 317, 326, 341, 583
BstNI	CCWGG	1 cut(s)	351
BstNSI	RCATGY	1 cut(s)	298
BstSCI	CCNGG	2 cut(s)	349, 581
BstSLI	GKGCMC	1 cut(s)	400
BstV1I	GCAGC	4 cut(s)	25, 75, 85, 521
BstX2I	RGATCY	1 cut(s)	180
BstYI	RGATCY	1 cut(s)	180
BstZI	CGGCCG	1 cut(s)	205
BsuI	GTATCC	1 cut(s)	440
BsuRI	GGCC	1 cut(s)	207
BtsCI	GGATG	1 cut(s)	448
BtsI	GCAGTG	2 cut(s)	73, 458
BtsIMutI	CAGTG	3 cut(s)	73, 273, 458
Cac8I	GCNNGC	4 cut(s)	73, 96, 296, 322
CciNI	GCGGCCGC	1 cut(s)	205
Cfr10I	RCCGGY	1 cut(s)	421
Cfr13I	GGNCC	1 cut(s)	363
CviAII	CATG	4 cut(s)	241, 295, 413, 553
DdeI	CTNAG	1 cut(s)	587
DpnI	GATC	3 cut(s)	182, 254, 389
DpnII	GATC	3 cut(s)	180, 252, 387
EaeI	YGGCCR	1 cut(s)	205
EagI	CGGCCG	1 cut(s)	205
EclXI	CGGCCG	1 cut(s)	205
Eco130I	CCWWGG	1 cut(s)	366
Eco47I	GGWCC	1 cut(s)	363
Eco52I	CGGCCG	1 cut(s)	205
Eco72I	CACGTG	1 cut(s)	214
Eco88I	CYCGRG	1 cut(s)	82
EcoO109I	RGGNCCY	1 cut(s)	363
EcoRII	CCWGG	1 cut(s)	349
EcoT14I	CCWWGG	1 cut(s)	366
EcoT22I	ATGCAT	2 cut(s)	300, 337
ErhI	CCWWGG	1 cut(s)	366
FaeI	CATG	4 cut(s)	244, 298, 416, 556
FaqI	GGGAC	1 cut(s)	376
FatI	CATG	4 cut(s)	240, 294, 412, 552
FbaI	TGATCA	1 cut(s)	387
Fnu4HI	GCNGC	6 cut(s)	14, 64, 99, 205, 208, 510
FokI	GGATG	1 cut(s)	455
Fsp4HI	GCNGC	6 cut(s)	14, 64, 99, 205, 208, 510
GluI	GCNGC	6 cut(s)	14, 64, 99, 205, 208, 510
GsuI	CTGGAG	1 cut(s)	555
HaeIII	GGCC	1 cut(s)	207
HapII	CCGG	2 cut(s)	422, 582
Hin1II	CATG	4 cut(s)	244, 298, 416, 556
HinfI	GANTC	4 cut(s)	29, 36, 263, 408
HpaII	CCGG	2 cut(s)	422, 582
Hpy166II	GTNNAC	1 cut(s)	487
Hpy188I	TCNGA	2 cut(s)	180, 631
Hpy188III	TCNNGA	2 cut(s)	33, 572
Hpy8I	GTNNAC	1 cut(s)	487
HpyAV	CCTTC	1 cut(s)	485
HpyCH4III	ACNGT	2 cut(s)	378, 402
HpyCH4IV	ACGT	2 cut(s)	213, 640
HpyCH4V	TGCA	6 cut(s)	23, 298, 335, 509, 558, 638
HpyF10VI	GCNNNNNNNGC	5 cut(s)	72, 317, 326, 341, 583
HpyF3I	CTNAG	1 cut(s)	587
HpySE526I	ACGT	2 cut(s)	213, 640
Hsp92II	CATG	4 cut(s)	244, 298, 416, 556
Ksp22I	TGATCA	1 cut(s)	387
Kzo9I	GATC	3 cut(s)	180, 252, 387
LmnI	GCTCC	2 cut(s)	574, 601
Lsp1109I	GCAGC	4 cut(s)	25, 75, 85, 521
LweI	GCATC	2 cut(s)	307, 322
MaeII	ACGT	2 cut(s)	213, 640
MalI	GATC	3 cut(s)	182, 254, 389
MboI	GATC	3 cut(s)	180, 252, 387
MboII	GAAGA	1 cut(s)	383
MflI	RGATCY	1 cut(s)	180
MhlI	GDGCHC	1 cut(s)	400
MluCI	AATT	2 cut(s)	119, 225
MlyI	GAGTC	1 cut(s)	272
MmeI	TCCRAC	1 cut(s)	360
MnlI	CCTC	3 cut(s)	146, 149, 248
Mph1103I	ATGCAT	2 cut(s)	300, 337
MseI	TTAA	1 cut(s)	434
MspI	CCGG	2 cut(s)	422, 582
MspR9I	CCNGG	2 cut(s)	351, 583
Mva1269I	GAATGC	2 cut(s)	335, 577
MvaI	CCWGG	1 cut(s)	351
MwoI	GCNNNNNNNGC	5 cut(s)	72, 317, 326, 341, 583
NciI	CCSGG	1 cut(s)	583
NdeII	GATC	3 cut(s)	180, 252, 387
NlaIII	CATG	4 cut(s)	244, 298, 416, 556
NlaIV	GGNNCC	1 cut(s)	364
NmeAIII	GCCGAG	1 cut(s)	90
NotI	GCGGCCGC	1 cut(s)	205
NsiI	ATGCAT	2 cut(s)	300, 337
NspI	RCATGY	1 cut(s)	298
PaeI	GCATGC	1 cut(s)	298
PctI	GAATGC	2 cut(s)	335, 577
PfeI	GAWTC	3 cut(s)	29, 36, 408
PflMI	CCANNNNNTGG	1 cut(s)	217
PkrI	GCNGC	6 cut(s)	15, 65, 100, 206, 209, 511
PleI	GAGTC	1 cut(s)	271
PmaCI	CACGTG	1 cut(s)	214
PmlI	CACGTG	1 cut(s)	214
PpsI	GAGTC	1 cut(s)	271
Ppu21I	YACGTR	1 cut(s)	214
PpuMI	RGGWCCY	1 cut(s)	363
Psp5II	RGGWCCY	1 cut(s)	363
Psp6I	CCWGG	1 cut(s)	349
PspCI	CACGTG	1 cut(s)	214
PspGI	CCWGG	1 cut(s)	349
PspN4I	GGNNCC	1 cut(s)	364
PspPI	GGNCC	1 cut(s)	363
PspPPI	RGGWCCY	1 cut(s)	363
PsrI	GAACNNNNNNTAC	2 cut(s)	71, 103
PsuI	RGATCY	1 cut(s)	180
SaqAI	TTAA	1 cut(s)	434
SatI	GCNGC	6 cut(s)	14, 64, 99, 205, 208, 510
Sau3AI	GATC	3 cut(s)	180, 252, 387
Sau96I	GGNCC	1 cut(s)	363
SchI	GAGTC	1 cut(s)	272
ScrFI	CCNGG	2 cut(s)	351, 583
SduI	GDGCHC	1 cut(s)	400
SfaNI	GCATC	2 cut(s)	307, 322
SinI	GGWCC	1 cut(s)	363
SmlI	CTYRAG	1 cut(s)	186
SmoI	CTYRAG	1 cut(s)	186
SphI	GCATGC	1 cut(s)	298
Sse9I	AATT	2 cut(s)	119, 225
SsiI	CCGC	2 cut(s)	204, 208
StyD4I	CCNGG	2 cut(s)	349, 581
StyI	CCWWGG	1 cut(s)	366
TaaI	ACNGT	2 cut(s)	378, 402
TaiI	ACGT	2 cut(s)	216, 643
TaqI	TCGA	1 cut(s)	32
TasI	AATT	2 cut(s)	119, 225
TauI	GCSGC	2 cut(s)	207, 210
TfiI	GAWTC	3 cut(s)	29, 36, 408
Tru1I	TTAA	1 cut(s)	434
Tru9I	TTAA	1 cut(s)	434
TscAI	CASTG	3 cut(s)	73, 273, 465
TseI	GCWGC	4 cut(s)	13, 63, 98, 509
TspDTI	ATGAA	3 cut(s)	328, 460, 487
TspRI	CASTG	3 cut(s)	73, 273, 465
Van91I	CCANNNNNTGG	1 cut(s)	217
VpaK11BI	GGWCC	1 cut(s)	363
XceI	RCATGY	1 cut(s)	298
Zsp2I	ATGCAT	2 cut(s)	300, 337

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.