MD03G1005300.v1.1

Cytokinin riboside 5'-monophosphate phosphoribohydrolase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
Physical Location & Seq
Forward (+)
439810 .. 443237
3428 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1005300.v1.1.491

Sequence Viewer

Length: 630 bp
ATGCAATTGATGGGTAAGTTCAAAAGGATGTGTGTATTTTGTGGAAGTAATTCAGGGCACAGAAAGATATTCAGTGATGCAGCTCTTCAACTTGGGAAAGAACTGGTGGAGAGGAAAATGGATTTGGTGTATGGAGGAGGAAGTGTAGGGTTGATGGGGTTGGTTTCTCAAACAGTTTATGATGGCGGATGTCATGTTCTTGGAGTAATCCCAACAGTCCTAATTCCCCTTGAGATATCAGGCAATTCAGTAGGAGAAGTATTGGTTGTATCGGATATGCATGAAAGAAAGGCTGAGATGGCACGTCGAGCTGATGCTTTCATTGCATTGCCTGGTGGGTATGGAACCATGGAAGAGTTGCTTGAGATGATAACATGGTCTCAGCTTGGAATCCATCATAAACCAGTGGGTCTCTTGAACATTGATGGGTATTATGATTGCTTGCTTCGTCTGTTTGACAAAGGTGTGGAAGAGGGGTTTATCAATTTATCTGCTAGGAATATTGTCATATCTGCAAAAACTGCTACAGAGCTGATACAGAAGATGGAGGAATACATGCCTTCGCAGAATCAAGTGGCTCCAACCCAAAACTGGGATGTGGAGGAAAACCATGCAAAAGGTTTGTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

210

Amino Acids

23.02

Weight (kDa)

5.52

Isoelectric Point (pI)

43.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LDcluster4 PF18306 15 - 122 5.6e-12 SLOG cluster4 family
Lysine_decarbox PF03641 52 - 182 5.2e-46 Possible lysine decarboxylase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 186
AfiI CCNNNNNNNGG 2 cut(s) 591, 592
AgsI TTSAA 3 cut(s) 22, 89, 418
AjiI CACGTC 1 cut(s) 305
AjnI CCWGG 1 cut(s) 331
AjuI GAANNNNNNNTTGG 2 cut(s) 107, 139
AloI GAACNNNNNNTCC 2 cut(s) 180, 212
AluBI AGCT 4 cut(s) 83, 311, 385, 532
AluI AGCT 4 cut(s) 83, 311, 385, 532
Alw26I GTCTC 2 cut(s) 384, 416
ApeKI GCWGC 1 cut(s) 80
Asp700I GAANNNNTTC 1 cut(s) 49
BaeGI GKGCMC 1 cut(s) 60
BbvI GCAGC 1 cut(s) 92
BccI CCATC 7 cut(s) 4, 148, 176, 292, 402, 419, 538
BciT130I CCWGG 1 cut(s) 333
BcoDI GTCTC 2 cut(s) 384, 416
BfaI CTAG 1 cut(s) 495
BfmI CTRYAG 1 cut(s) 525
BisI GCNGC 1 cut(s) 81
BlsI GCNGC 1 cut(s) 82
Bme1390I CCNGG 1 cut(s) 333
BmgBI CACGTC 1 cut(s) 305
BmiI GGNNCC 2 cut(s) 346, 579
BmrFI CCNGG 1 cut(s) 333
BmrI ACTGGG 1 cut(s) 601
BmsI GCATC 2 cut(s) 67, 304
BmuI ACTGGG 1 cut(s) 601
BpuEI CTTGAG 2 cut(s) 251, 383
BsaI GGTCTC 2 cut(s) 384, 416
BsaJI CCNNGG 1 cut(s) 348
BsaXI ACNNNNNCTCC 2 cut(s) 129, 159
Bsc4I CCNNNNNNNGG 2 cut(s) 591, 592
Bse1I ACTGG 3 cut(s) 108, 404, 596
Bse3DI GCAATG 2 cut(s) 321, 326
BseBI CCWGG 1 cut(s) 333
BseDI CCNNGG 1 cut(s) 348
BseGI GGATG 3 cut(s) 33, 194, 601
BseLI CCNNNNNNNGG 2 cut(s) 591, 592
BseMI GCAATG 2 cut(s) 321, 326
BseMII CTCAG 2 cut(s) 285, 395
BseNI ACTGG 3 cut(s) 108, 404, 596
BseRI GAGGAG 1 cut(s) 150
BseSI GKGCMC 1 cut(s) 60
BseXI GCAGC 1 cut(s) 92
BslI CCNNNNNNNGG 2 cut(s) 591, 592
BsmAI GTCTC 2 cut(s) 384, 416
Bso31I GGTCTC 2 cut(s) 384, 416
Bsp1286I GDGCHC 1 cut(s) 60
Bsp19I CCATGG 1 cut(s) 348
BspACI CCGC 1 cut(s) 186
BspCNI CTCAG 2 cut(s) 286, 394
BspLI GGNNCC 2 cut(s) 346, 579
BspQI GCTCTTC 1 cut(s) 90
BspTNI GGTCTC 2 cut(s) 384, 416
BsrDI GCAATG 2 cut(s) 321, 326
BsrI ACTGG 3 cut(s) 108, 404, 596
BssECI CCNNGG 1 cut(s) 348
BssT1I CCWWGG 1 cut(s) 348
Bst2UI CCWGG 1 cut(s) 333
Bst4CI ACNGT 2 cut(s) 175, 217
Bst6I CTCTTC 3 cut(s) 90, 348, 465
BstAPI GCANNNNNTGC 1 cut(s) 521
BstC8I GCNNGC 1 cut(s) 443
BstDEI CTNAG 2 cut(s) 294, 381
BstDSI CCRYGG 1 cut(s) 348
BstF5I GGATG 3 cut(s) 33, 194, 601
BstMAI GTCTC 2 cut(s) 384, 416
BstMWI GCNNNNNNNGC 4 cut(s) 299, 308, 323, 521
BstNI CCWGG 1 cut(s) 333
BstNSI RCATGY 1 cut(s) 559
BstSCI CCNGG 1 cut(s) 331
BstSFI CTRYAG 1 cut(s) 525
BstSLI GKGCMC 1 cut(s) 60
BstV1I GCAGC 1 cut(s) 92
BtgI CCRYGG 1 cut(s) 348
BtrI CACGTC 1 cut(s) 305
BtsCI GGATG 3 cut(s) 33, 194, 601
BtsIMutI CAGTG 2 cut(s) 79, 411
Cac8I GCNNGC 1 cut(s) 443
CviAII CATG 6 cut(s) 194, 281, 349, 375, 556, 611
CviJI RGCY 6 cut(s) 83, 293, 311, 385, 532, 578
CviKI_1 RGCY 6 cut(s) 83, 293, 311, 385, 532, 578
DdeI CTNAG 2 cut(s) 294, 381
Eam1104I CTCTTC 3 cut(s) 90, 348, 465
EarI CTCTTC 3 cut(s) 90, 348, 465
EciI GGCGGA 1 cut(s) 201
Eco130I CCWWGG 1 cut(s) 348
Eco31I GGTCTC 2 cut(s) 384, 416
Eco32I GATATC 1 cut(s) 237
EcoRII CCWGG 1 cut(s) 331
EcoRV GATATC 1 cut(s) 237
EcoT14I CCWWGG 1 cut(s) 348
EcoT22I ATGCAT 1 cut(s) 282
ErhI CCWWGG 1 cut(s) 348
FaeI CATG 6 cut(s) 197, 284, 352, 378, 559, 614
FalI AAGNNNNNCTT 2 cut(s) 345, 377
FatI CATG 6 cut(s) 193, 280, 348, 374, 555, 610
Fnu4HI GCNGC 1 cut(s) 81
FokI GGATG 3 cut(s) 40, 201, 608
Fsp4HI GCNGC 1 cut(s) 81
FspBI CTAG 1 cut(s) 495
GluI GCNGC 1 cut(s) 81
Hin1II CATG 6 cut(s) 197, 284, 352, 378, 559, 614
HinfI GANTC 2 cut(s) 390, 568
Hpy188I TCNGA 1 cut(s) 274
Hpy188III TCNNGA 1 cut(s) 415
Hpy99I CGWCG 1 cut(s) 309
HpyAV CCTTC 1 cut(s) 570
HpyCH4III ACNGT 2 cut(s) 175, 217
HpyCH4IV ACGT 1 cut(s) 304
HpyCH4V TGCA 6 cut(s) 4, 80, 280, 326, 515, 614
HpyF10VI GCNNNNNNNGC 4 cut(s) 299, 308, 323, 521
HpyF3I CTNAG 2 cut(s) 294, 381
HpySE526I ACGT 1 cut(s) 304
Hsp92II CATG 6 cut(s) 197, 284, 352, 378, 559, 614
LguI GCTCTTC 1 cut(s) 90
LmnI GCTCC 1 cut(s) 583
LpnPI CCDG 7 cut(s) 39, 89, 225, 318, 345, 417, 577
Lsp1109I GCAGC 1 cut(s) 92
LweI GCATC 2 cut(s) 67, 304
MaeI CTAG 1 cut(s) 495
MaeII ACGT 1 cut(s) 304
MboII GAAGA 4 cut(s) 77, 365, 482, 553
MfeI CAATTG 1 cut(s) 5
MhlI GDGCHC 1 cut(s) 60
MluCI AATT 5 cut(s) 5, 49, 222, 244, 484
MmeI TCCRAC 1 cut(s) 605
MnlI CCTC 6 cut(s) 105, 128, 131, 466, 541, 595
Mph1103I ATGCAT 1 cut(s) 282
MroXI GAANNNNTTC 1 cut(s) 49
MspR9I CCNGG 1 cut(s) 333
MunI CAATTG 1 cut(s) 5
MvaI CCWGG 1 cut(s) 333
MwoI GCNNNNNNNGC 4 cut(s) 299, 308, 323, 521
NcoI CCATGG 1 cut(s) 348
NlaIII CATG 6 cut(s) 197, 284, 352, 378, 559, 614
NlaIV GGNNCC 2 cut(s) 346, 579
NsiI ATGCAT 1 cut(s) 282
NspI RCATGY 1 cut(s) 559
PciSI GCTCTTC 1 cut(s) 90
PdmI GAANNNNTTC 1 cut(s) 49
PfeI GAWTC 2 cut(s) 390, 568
PkrI GCNGC 1 cut(s) 82
Psp6I CCWGG 1 cut(s) 331
PspGI CCWGG 1 cut(s) 331
PspN4I GGNNCC 2 cut(s) 346, 579
SapI GCTCTTC 1 cut(s) 90
SatI GCNGC 1 cut(s) 81
ScrFI CCNGG 1 cut(s) 333
SduI GDGCHC 1 cut(s) 60
SetI ASST 7 cut(s) 85, 307, 313, 387, 466, 534, 622
SfaNI GCATC 2 cut(s) 67, 304
SfcI CTRYAG 1 cut(s) 525
SmlI CTYRAG 2 cut(s) 230, 362
SmoI CTYRAG 2 cut(s) 230, 362
Sse9I AATT 5 cut(s) 5, 49, 222, 244, 484
SsiI CCGC 1 cut(s) 186
SspI AATATT 1 cut(s) 502
SspMI CTAG 1 cut(s) 495
StyD4I CCNGG 1 cut(s) 331
StyI CCWWGG 1 cut(s) 348
TaaI ACNGT 2 cut(s) 175, 217
TaiI ACGT 1 cut(s) 307
TaqI TCGA 1 cut(s) 307
TasI AATT 5 cut(s) 5, 49, 222, 244, 484
TfiI GAWTC 2 cut(s) 390, 568
TscAI CASTG 2 cut(s) 79, 411
TseI GCWGC 1 cut(s) 80
TspDTI ATGAA 2 cut(s) 297, 310
TspRI CASTG 2 cut(s) 79, 411
XceI RCATGY 1 cut(s) 559
XcmI CCANNNNNNNNNTGG 1 cut(s) 588
XmnI GAANNNNTTC 1 cut(s) 49
XspI CTAG 1 cut(s) 495
Zsp2I ATGCAT 1 cut(s) 282
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.