Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0001203

Physical Location & Seq

Genomic Coordinates Forward (+)

5151547 .. 5154146

Gene Structure 2600 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1064800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGGAAGAGAACAAAAGCAGCAAGTTCAGGAGGATTTGTGTGTTCTGTGGAAGCAACTCTGGCCGCAGAAAAGTGTTCAGTGATGCTACTCTGGAGTTGGGTAATGAACTGGTGAAAAGGAAGATAGATTTGGTGTATGGCGGTGGAAGTGTCGGGTTGATGGGTTTGGTATCGCAGACAGTGTATGACGGAGGTTGCCATGTTCTTGGGGTCATTCCAAAAGCTCTCATTCCTCTTGAGATATCTGGTCCATCCTTTGGAGAAGTAAGAACAGTTGCAAACATGCATGAACGCAAAGCTTTGATGGCTCAAGAGGCTGATGCCTTCATTGCTCTTCCTGGAGGATATGGAACTATGGAAGAGCTGTTGGAGATAATAACATGGTCGCAACTTGGGATTCATATGAAGCCGGTTGGTTTGCTTAATGTAGATGGGTACTATAATACCTTGCTTGCGCTATTTGACAATGGTGTCGAAGAAGGATTCATCAAGCCGGGTGCTCGGCATATAGTTGTCTCTGCTCCAACAGCCAAAGAACTTGTTCAGAAGATGGAGCAATACATTCCTTCCCATGACCATGTTGCTTCTCATGAAAGCTGGAAAAAGGAGCAACTCGGTAAAACTCAGGCCAAGAACACGCAAGGTGAAACTGTCACCGGCAATAATTCTTTCACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lysine_decarbox

Protein Analysis

226

Amino Acids

24.54

Weight (kDa)

6.39

Isoelectric Point (pI)

33.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LDcluster4	PF18306	17 - 123	4e-10	SLOG cluster4 family
Lysine_decarbox	PF03641	54 - 184	8.5e-46	Possible lysine decarboxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001203)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11950 AT5G11950 AT5G11950 AT5G11950 AT5G26140 AT5G26140 AT5G26140
fragaria_vesca	FvH4_2g31610 FvH4_2g31610 FvH4_2g31610 FvH4_2g38680 FvH4_2g38680 FvH4_3g04550 FvH4_3g04550 FvH4_3g04550
malus_domestica	MD03G1005300.v1.1 MD08G1014400.v1.1 MD08G1064800.v1.1 MD11G1007900.v1.1 MD15G1013800.v1.1 MD15G1056800.v1.1
prunus_persica	Prupe.1G367500_v2.0.a1 Prupe.1G409400_v2.0.a1 Prupe.1G409400_v2.0.a1 Prupe.1G409400_v2.0.a1 Prupe.1G409400_v2.0.a1 Prupe.1G409400_v2.0.a1 Prupe.1G409400_v2.0.a1 Prupe.1G409400_v2.0.a1 Prupe.6G005100_v2.0.a1 Prupe.6G005100_v2.0.a1
pyrus_communis	pycom03g00550 pycom08g01300 pycom08g05310 pycom11g00540 pycom15g01200 pycom15g05320
rosa_chinensis	RchiOBHm_Chr6g0302631 RchiOBHm_Chr6g0311211
rosa_laevigata	RLG00000010427 RLG00000011154
rosa_multiflora	Rmu_co8501517.1_g000001 Rmu_sc0005455.1_g000005
rosa_roxburghii	Rroxscaffold_7G00157900 Rroxscaffold_7G00165490
rosa_rugosa	Rorug06G0315600 Rorug06G0386400 Rorug06G0386500
rosa_samantha	Rh6AG428900 Rh6BG473600 Rh6BG511200 Rh6CG441200 Rh6CG517000 Rh6DG503500
rosa_wichuraiana	Rw6G037120 Rw6G043590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	470
AccB7I	CCANNNNNTGG	1 cut(s)	257
AciI	CCGC	2 cut(s)	64, 141
AcoI	YGGCCR	1 cut(s)	61
AfaI	GTAC	1 cut(s)	437
AfiI	CCNNNNNNNGG	1 cut(s)	257
AjnI	CCWGG	1 cut(s)	337
AjuI	GAANNNNNNNTTGG	2 cut(s)	113, 145
AluBI	AGCT	4 cut(s)	224, 299, 364, 597
AluI	AGCT	4 cut(s)	224, 299, 364, 597
Alw21I	GWGCWC	1 cut(s)	502
Alw26I	GTCTC	1 cut(s)	520
AoxI	GGCC	2 cut(s)	61, 627
ApeKI	GCWGC	1 cut(s)	18
Asp700I	GAANNNNTTC	1 cut(s)	540
AspLEI	GCGC	1 cut(s)	457
AspS9I	GGNCC	1 cut(s)	248
AsuC2I	CCSGG	1 cut(s)	495
AsuHPI	GGTGA	4 cut(s)	124, 646, 656, 664
AvaII	GGWCC	1 cut(s)	248
Bbv12I	GWGCWC	1 cut(s)	502
BbvI	GCAGC	1 cut(s)	30
BccI	CCATC	5 cut(s)	154, 259, 298, 425, 544
BciT130I	CCWGG	1 cut(s)	339
BcnI	CCSGG	1 cut(s)	495
BcoDI	GTCTC	1 cut(s)	520
BfaI	CTAG	1 cut(s)	676
BisI	GCNGC	2 cut(s)	19, 64
BlsI	GCNGC	2 cut(s)	20, 65
Bme1390I	CCNGG	2 cut(s)	339, 495
Bme18I	GGWCC	1 cut(s)	248
BmgT120I	GGNCC	1 cut(s)	248
BmrFI	CCNGG	2 cut(s)	339, 495
BmsI	GCATC	2 cut(s)	73, 310
BpmI	CTGGAG	2 cut(s)	113, 360
BpuEI	CTTGAG	2 cut(s)	257, 294
BpuMI	CCSGG	1 cut(s)	495
BsaXI	ACNNNNNCTCC	2 cut(s)	22, 52
Bsc4I	CCNNNNNNNGG	1 cut(s)	257
Bse118I	RCCGGY	2 cut(s)	409, 656
Bse1I	ACTGG	1 cut(s)	114
Bse3DI	GCAATG	1 cut(s)	327
BseBI	CCWGG	1 cut(s)	339
BseGI	GGATG	1 cut(s)	251
BseLI	CCNNNNNNNGG	1 cut(s)	257
BseMI	GCAATG	1 cut(s)	327
BseMII	CTCAG	1 cut(s)	638
BseNI	ACTGG	1 cut(s)	114
BseXI	GCAGC	1 cut(s)	30
BshFI	GGCC	2 cut(s)	63, 629
BsiHKAI	GWGCWC	1 cut(s)	502
BsiSI	CCGG	3 cut(s)	410, 494, 657
BslI	CCNNNNNNNGG	1 cut(s)	257
BsmAI	GTCTC	1 cut(s)	520
BsnI	GGCC	2 cut(s)	63, 629
Bsp1286I	GDGCHC	1 cut(s)	502
BspACI	CCGC	2 cut(s)	64, 141
BspANI	GGCC	2 cut(s)	63, 629
BspCNI	CTCAG	1 cut(s)	637
BspHI	TCATGA	1 cut(s)	589
BspQI	GCTCTTC	2 cut(s)	339, 354
BsrDI	GCAATG	1 cut(s)	327
BsrFI	RCCGGY	2 cut(s)	409, 656
BsrI	ACTGG	1 cut(s)	114
BssAI	RCCGGY	2 cut(s)	409, 656
Bst2UI	CCWGG	1 cut(s)	339
Bst4CI	ACNGT	3 cut(s)	181, 274, 652
Bst6I	CTCTTC	2 cut(s)	339, 354
BstC8I	GCNNGC	1 cut(s)	453
BstDEI	CTNAG	1 cut(s)	624
BstF5I	GGATG	1 cut(s)	251
BstHHI	GCGC	1 cut(s)	457
BstMAI	GTCTC	1 cut(s)	520
BstMWI	GCNNNNNNNGC	5 cut(s)	60, 305, 314, 329, 527
BstNI	CCWGG	1 cut(s)	339
BstNSI	RCATGY	1 cut(s)	286
BstSCI	CCNGG	2 cut(s)	337, 493
BstV1I	GCAGC	1 cut(s)	30
BstXI	CCANNNNNNTGG	1 cut(s)	206
BsuRI	GGCC	2 cut(s)	63, 629
BtsCI	GGATG	1 cut(s)	251
BtsIMutI	CAGTG	2 cut(s)	85, 186
Cac8I	GCNNGC	1 cut(s)	453
CciI	TCATGA	1 cut(s)	589
CfoI	GCGC	1 cut(s)	457
Cfr10I	RCCGGY	2 cut(s)	409, 656
Cfr13I	GGNCC	1 cut(s)	248
Csp6I	GTAC	1 cut(s)	436
CviAII	CATG	7 cut(s)	200, 283, 287, 381, 572, 578, 590
CviQI	GTAC	1 cut(s)	436
DdeI	CTNAG	1 cut(s)	624
DrdI	GACNNNNNNGTC	1 cut(s)	470
DseDI	GACNNNNNNGTC	1 cut(s)	470
EaeI	YGGCCR	1 cut(s)	61
Eam1104I	CTCTTC	2 cut(s)	339, 354
EarI	CTCTTC	2 cut(s)	339, 354
Eco32I	GATATC	1 cut(s)	243
Eco47I	GGWCC	1 cut(s)	248
EcoRII	CCWGG	1 cut(s)	337
EcoRV	GATATC	1 cut(s)	243
EcoT22I	ATGCAT	1 cut(s)	288
FaeI	CATG	7 cut(s)	203, 286, 290, 384, 575, 581, 593
FatI	CATG	7 cut(s)	199, 282, 286, 380, 571, 577, 589
FauNDI	CATATG	1 cut(s)	402
Fnu4HI	GCNGC	2 cut(s)	19, 64
FokI	GGATG	1 cut(s)	238
Fsp4HI	GCNGC	2 cut(s)	19, 64
FspBI	CTAG	1 cut(s)	676
GlaI	GCGC	1 cut(s)	456
GluI	GCNGC	2 cut(s)	19, 64
GsuI	CTGGAG	2 cut(s)	113, 360
HaeIII	GGCC	2 cut(s)	63, 629
HapII	CCGG	3 cut(s)	410, 494, 657
HhaI	GCGC	1 cut(s)	457
Hin1II	CATG	7 cut(s)	203, 286, 290, 384, 575, 581, 593
Hin6I	GCGC	1 cut(s)	455
HinP1I	GCGC	1 cut(s)	455
HindIII	AAGCTT	1 cut(s)	297
HinfI	GANTC	2 cut(s)	397, 483
HpaII	CCGG	3 cut(s)	410, 494, 657
HphI	GGTGA	4 cut(s)	124, 646, 656, 664
Hpy188I	TCNGA	1 cut(s)	546
Hpy188III	TCNNGA	5 cut(s)	28, 92, 236, 311, 590
HpyAV	CCTTC	3 cut(s)	334, 473, 576
HpyCH4III	ACNGT	3 cut(s)	181, 274, 652
HpyCH4V	TGCA	2 cut(s)	278, 286
HpyF10VI	GCNNNNNNNGC	5 cut(s)	60, 305, 314, 329, 527
HpyF3I	CTNAG	1 cut(s)	624
Hsp92II	CATG	7 cut(s)	203, 286, 290, 384, 575, 581, 593
HspAI	GCGC	1 cut(s)	455
LguI	GCTCTTC	2 cut(s)	339, 354
LmnI	GCTCC	3 cut(s)	526, 553, 607
Lsp1109I	GCAGC	1 cut(s)	30
LweI	GCATC	2 cut(s)	73, 310
MaeI	CTAG	1 cut(s)	676
MaeIII	GTNAC	1 cut(s)	652
MboII	GAAGA	6 cut(s)	17, 133, 326, 371, 488, 559
MhlI	GDGCHC	1 cut(s)	502
MluCI	AATT	1 cut(s)	664
MmeI	TCCRAC	2 cut(s)	348, 548
MnlI	CCTC	5 cut(s)	24, 185, 243, 307, 335
Mph1103I	ATGCAT	1 cut(s)	288
MroXI	GAANNNNTTC	1 cut(s)	540
MseI	TTAA	1 cut(s)	423
MslI	CAYNNNNRTG	1 cut(s)	576
MspI	CCGG	3 cut(s)	410, 494, 657
MspR9I	CCNGG	2 cut(s)	339, 495
MvaI	CCWGG	1 cut(s)	339
MwoI	GCNNNNNNNGC	5 cut(s)	60, 305, 314, 329, 527
NciI	CCSGG	1 cut(s)	495
NdeI	CATATG	1 cut(s)	402
NlaIII	CATG	7 cut(s)	203, 286, 290, 384, 575, 581, 593
NmeAIII	GCCGAG	1 cut(s)	481
NmuCI	GTSAC	1 cut(s)	652
NsiI	ATGCAT	1 cut(s)	288
NspI	RCATGY	1 cut(s)	286
PagI	TCATGA	1 cut(s)	589
PciSI	GCTCTTC	2 cut(s)	339, 354
PdmI	GAANNNNTTC	1 cut(s)	540
PfeI	GAWTC	2 cut(s)	397, 483
PflMI	CCANNNNNTGG	1 cut(s)	257
PfoI	TCCNGGA	1 cut(s)	337
PkrI	GCNGC	2 cut(s)	20, 65
Psp6I	CCWGG	1 cut(s)	337
PspGI	CCWGG	1 cut(s)	337
PspPI	GGNCC	1 cut(s)	248
RsaI	GTAC	1 cut(s)	437
RsaNI	GTAC	1 cut(s)	436
RseI	CAYNNNNRTG	1 cut(s)	576
SapI	GCTCTTC	2 cut(s)	339, 354
SaqAI	TTAA	1 cut(s)	423
SatI	GCNGC	2 cut(s)	19, 64
Sau96I	GGNCC	1 cut(s)	248
ScrFI	CCNGG	2 cut(s)	339, 495
SduI	GDGCHC	1 cut(s)	502
SetI	ASST	8 cut(s)	196, 226, 301, 366, 449, 599, 646, 677
SfaNI	GCATC	2 cut(s)	73, 310
SinI	GGWCC	1 cut(s)	248
SmiMI	CAYNNNNRTG	1 cut(s)	576
SmlI	CTYRAG	2 cut(s)	236, 309
SmoI	CTYRAG	2 cut(s)	236, 309
Sse9I	AATT	1 cut(s)	664
SsiI	CCGC	2 cut(s)	64, 141
SspMI	CTAG	1 cut(s)	676
StyD4I	CCNGG	2 cut(s)	337, 493
TaaI	ACNGT	3 cut(s)	181, 274, 652
TaqI	TCGA	1 cut(s)	474
TasI	AATT	1 cut(s)	664
TauI	GCSGC	1 cut(s)	66
TfiI	GAWTC	2 cut(s)	397, 483
Tru1I	TTAA	1 cut(s)	423
Tru9I	TTAA	1 cut(s)	423
TscAI	CASTG	2 cut(s)	85, 186
TseFI	GTSAC	1 cut(s)	652
TseI	GCWGC	1 cut(s)	18
Tsp45I	GTSAC	1 cut(s)	652
TspDTI	ATGAA	7 cut(s)	120, 303, 316, 389, 419, 475, 606
TspGWI	ACGGA	1 cut(s)	204
TspRI	CASTG	2 cut(s)	85, 186
Van91I	CCANNNNNTGG	1 cut(s)	257
VpaK11BI	GGWCC	1 cut(s)	248
XceI	RCATGY	1 cut(s)	286
XmnI	GAANNNNTTC	1 cut(s)	540
XspI	CTAG	1 cut(s)	676
Zsp2I	ATGCAT	1 cut(s)	288

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.