Rh6AG428900

Cytokinin riboside 5'-monophosphate phosphoribohydrolase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
Physical Location & Seq
Forward (+)
62065731 .. 62068269
2539 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG428900.1

Sequence Viewer

Length: 471 bp
ATGGAGATGATTCAAGAACAACAACAACAAGAGGGTGTAATGAAATCTTCAAGATTCAAGCGTATCTGTGTTTTCTGTGGTAGCAGTGCTGGAAAGAACCCAAGTTATCAGCTTGCTGCTGTTCAACTTGGAAAACAACTGGTTGAAAGGAACATTGACTTGGTTTATGGAGGAGGGAGCATTGGTTTGATGGGTCAGGTCTCCCAAGCTGTTTATGATGGTGGTCGCCACGTGTTGGGAGTAATTCCCAGAACTCTCATGCCAAGAGAGATCACTGGAGAGCCTGTGGGAGAAGTAAGAGCTGTGTCTGGTATGCACCAGCGCAAAGCGGAAATGGCTCGCCAAGCTGATGCCTTTGTTGCCTTGCCAGGTACCCAATTTCCCCTACTAATAGCAACGTACAAGCACCTTATTCATCGAAAAGTAGCTATATATGATTATGTCGTAACAAGCACTTTCCGGTTAAGCTAA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

156

Amino Acids

17.2

Weight (kDa)

9.55

Isoelectric Point (pI)

42.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LDcluster4 PF18306 27 - 125 4.8e-09 SLOG cluster4 family
Lysine_decarbox PF03641 64 - 124 2.8e-16 Possible lysine decarboxylase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 371
AccB1I GGYRCC 1 cut(s) 371
AccB7I CCANNNNNTGG 1 cut(s) 235
AciI CCGC 1 cut(s) 329
AcvI CACGTG 1 cut(s) 232
AfaI GTAC 2 cut(s) 373, 401
AfiI CCNNNNNNNGG 1 cut(s) 235
AflIII ACRYGT 1 cut(s) 231
AgsI TTSAA 5 cut(s) 14, 51, 58, 125, 146
AjnI CCWGG 1 cut(s) 367
AjuI GAANNNNNNNTTGG 2 cut(s) 143, 175
AluBI AGCT 6 cut(s) 112, 209, 302, 347, 428, 468
AluI AGCT 6 cut(s) 112, 209, 302, 347, 428, 468
Alw26I GTCTC 1 cut(s) 205
ApeKI GCWGC 1 cut(s) 116
Asp718I GGTACC 1 cut(s) 371
AspLEI GCGC 1 cut(s) 324
BanI GGYRCC 1 cut(s) 371
BbrPI CACGTG 1 cut(s) 232
BbvI GCAGC 1 cut(s) 103
BccI CCATC 2 cut(s) 184, 212
BciT130I CCWGG 1 cut(s) 369
BcoDI GTCTC 1 cut(s) 205
BisI GCNGC 1 cut(s) 117
BlsI GCNGC 1 cut(s) 118
Bme1390I CCNGG 1 cut(s) 369
BmiI GGNNCC 1 cut(s) 373
BmrFI CCNGG 1 cut(s) 369
BmsI GCATC 1 cut(s) 340
BpmI CTGGAG 1 cut(s) 297
BsaAI YACGTR 1 cut(s) 232
BsaI GGTCTC 1 cut(s) 205
BsaWI WCCGGW 1 cut(s) 459
BsaXI ACNNNNNCTCC 4 cut(s) 169, 199, 270, 300
Bsc4I CCNNNNNNNGG 1 cut(s) 235
Bse1I ACTGG 2 cut(s) 144, 280
BseBI CCWGG 1 cut(s) 369
BseLI CCNNNNNNNGG 1 cut(s) 235
BseNI ACTGG 2 cut(s) 144, 280
BseRI GAGGAG 1 cut(s) 186
BseXI GCAGC 1 cut(s) 103
BshNI GGYRCC 1 cut(s) 371
BsiSI CCGG 1 cut(s) 460
BslI CCNNNNNNNGG 1 cut(s) 235
BsmAI GTCTC 1 cut(s) 205
Bso31I GGTCTC 1 cut(s) 205
Bsp143I GATC 1 cut(s) 270
BspACI CCGC 1 cut(s) 329
BspLI GGNNCC 1 cut(s) 373
BspT107I GGYRCC 1 cut(s) 371
BspTNI GGTCTC 1 cut(s) 205
BsrI ACTGG 2 cut(s) 144, 280
BssMI GATC 1 cut(s) 270
Bst2UI CCWGG 1 cut(s) 369
BstBAI YACGTR 1 cut(s) 232
BstC8I GCNNGC 2 cut(s) 114, 340
BstHHI GCGC 1 cut(s) 324
BstKTI GATC 1 cut(s) 273
BstMAI GTCTC 1 cut(s) 205
BstMBI GATC 1 cut(s) 270
BstMWI GCNNNNNNNGC 3 cut(s) 335, 344, 359
BstNI CCWGG 1 cut(s) 369
BstSCI CCNGG 1 cut(s) 367
BstV1I GCAGC 1 cut(s) 103
BtsI GCAGTG 1 cut(s) 91
BtsIMutI CAGTG 2 cut(s) 91, 273
Cac8I GCNNGC 2 cut(s) 114, 340
CfoI GCGC 1 cut(s) 324
Csp6I GTAC 2 cut(s) 372, 400
CviAII CATG 1 cut(s) 259
CviJI RGCY 8 cut(s) 112, 209, 283, 302, 338, 347, 428, 468
CviKI_1 RGCY 8 cut(s) 112, 209, 283, 302, 338, 347, 428, 468
CviQI GTAC 2 cut(s) 372, 400
DpnI GATC 1 cut(s) 272
DpnII GATC 1 cut(s) 270
Eco31I GGTCTC 1 cut(s) 205
Eco72I CACGTG 1 cut(s) 232
EcoRII CCWGG 1 cut(s) 367
FaeI CATG 1 cut(s) 262
FaiI YATR 8 cut(s) 168, 216, 260, 314, 431, 433, 435, 441
FatI CATG 1 cut(s) 258
Fnu4HI GCNGC 1 cut(s) 117
Fsp4HI GCNGC 1 cut(s) 117
GlaI GCGC 1 cut(s) 323
GluI GCNGC 1 cut(s) 117
GsuI CTGGAG 1 cut(s) 297
HapII CCGG 1 cut(s) 460
HhaI GCGC 1 cut(s) 324
Hin1II CATG 1 cut(s) 262
Hin6I GCGC 1 cut(s) 322
HinP1I GCGC 1 cut(s) 322
HinfI GANTC 2 cut(s) 10, 54
HpaII CCGG 1 cut(s) 460
Hpy188III TCNNGA 2 cut(s) 14, 51
HpyCH4IV ACGT 2 cut(s) 231, 398
HpyCH4V TGCA 1 cut(s) 316
HpyF10VI GCNNNNNNNGC 3 cut(s) 335, 344, 359
HpySE526I ACGT 2 cut(s) 231, 398
Hsp92II CATG 1 cut(s) 262
HspAI GCGC 1 cut(s) 322
KpnI GGTACC 1 cut(s) 375
Kzo9I GATC 1 cut(s) 270
LmnI GCTCC 1 cut(s) 177
Lsp1109I GCAGC 1 cut(s) 103
LweI GCATC 1 cut(s) 340
MaeII ACGT 2 cut(s) 231, 398
MaeIII GTNAC 1 cut(s) 445
MalI GATC 1 cut(s) 272
MboI GATC 1 cut(s) 270
MboII GAAGA 1 cut(s) 39
MluCI AATT 2 cut(s) 243, 377
MnlI CCTC 3 cut(s) 25, 164, 167
MseI TTAA 1 cut(s) 464
MspI CCGG 1 cut(s) 460
MspR9I CCNGG 1 cut(s) 369
MvaI CCWGG 1 cut(s) 369
MwoI GCNNNNNNNGC 3 cut(s) 335, 344, 359
NdeII GATC 1 cut(s) 270
NlaIII CATG 1 cut(s) 262
NlaIV GGNNCC 1 cut(s) 373
PfeI GAWTC 2 cut(s) 10, 54
PflMI CCANNNNNTGG 1 cut(s) 235
PkrI GCNGC 1 cut(s) 118
PmaCI CACGTG 1 cut(s) 232
PmlI CACGTG 1 cut(s) 232
Ppu21I YACGTR 1 cut(s) 232
Psp6I CCWGG 1 cut(s) 367
PspCI CACGTG 1 cut(s) 232
PspGI CCWGG 1 cut(s) 367
PspN4I GGNNCC 1 cut(s) 373
RsaI GTAC 2 cut(s) 373, 401
RsaNI GTAC 2 cut(s) 372, 400
SaqAI TTAA 1 cut(s) 464
SatI GCNGC 1 cut(s) 117
Sau3AI GATC 1 cut(s) 270
ScrFI CCNGG 1 cut(s) 369
SfaNI GCATC 1 cut(s) 340
Sse9I AATT 2 cut(s) 243, 377
SsiI CCGC 1 cut(s) 329
StyD4I CCNGG 1 cut(s) 367
TaiI ACGT 2 cut(s) 234, 401
TaqI TCGA 1 cut(s) 418
TasI AATT 2 cut(s) 243, 377
TfiI GAWTC 2 cut(s) 10, 54
Tru1I TTAA 1 cut(s) 464
Tru9I TTAA 1 cut(s) 464
TscAI CASTG 2 cut(s) 91, 280
TseI GCWGC 1 cut(s) 116
TspDTI ATGAA 2 cut(s) 56, 404
TspRI CASTG 2 cut(s) 91, 280
Van91I CCANNNNNTGG 1 cut(s) 235
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.