Prupe.6G005100_v2.0.a1

Cytokinin riboside 5'-monophosphate phosphoribohydrolase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0001203
Physical Location & Seq
Forward (+)
485353 .. 488842
3490 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G005100.3

Sequence Viewer

Length: 624 bp
ATGGGTAAGTTCAAAAGGGTGTGTGTCTTCTGTGGAAGTAATTCAGGCCATAGAAAGATATTCAGTGATGCAGCTCTTCAACTTGGGACTCAACTGGTGGAGAGGAAGATGGATTTGGTGTATGGAGGAGGAAGTGTAGGCCTGATGGGGTTGGTTTCACAAACAGTTTATGATGGTGGATGTCATGTTCTTGGAGTTATCCCAACAGCCCTTGTTCCACTTGAGATATCAGGCAATTCAATAGGAGAAGTGTTGATTGTATCGGATATGCATGAAAGGAAGGCTGAGATGGCTCGTCAAGCCGATGCTTTCATTGCACTTCCTGGTGGATATGGAACCATGGAAGAGTTGCTTGAGATGATAACATGGTCTCAGCTTGGAATCCATGACAAACCAGTGGGTCTCTTAAATATTGATGGGTATTATGATTGCTTGCTTCGTCTGTTTGACAAAGGCGTGGAAGAAGGATTTATTAATTTATCTGCAAGGAACATTGTCATATCTGCAAAAACTGCTCAAGAGCTGATACAGAGGATGGAGGAATACATACCTTTGCATAATCAAGTGGCACCAACCCAAAGCTGGAATGTGGAAGAAAACCATGCAAATCATAAAAGGGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lysine_decarbox

Protein Analysis

208

Amino Acids

22.73

Weight (kDa)

5.62

Isoelectric Point (pI)

41.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 568
AfiI CCNNNNNNNGG 1 cut(s) 582
AgsI TTSAA 3 cut(s) 13, 80, 240
AjnI CCWGG 1 cut(s) 322
AjuI GAANNNNNNNTTGG 2 cut(s) 98, 130
AloI GAACNNNNNNTCC 2 cut(s) 171, 203
AluBI AGCT 4 cut(s) 74, 376, 523, 582
AluI AGCT 4 cut(s) 74, 376, 523, 582
Alw26I GTCTC 2 cut(s) 375, 407
AoxI GGCC 2 cut(s) 46, 139
ApeKI GCWGC 1 cut(s) 71
AseI ATTAAT 1 cut(s) 474
Asp700I GAANNNNTTC 1 cut(s) 40
BanI GGYRCC 1 cut(s) 568
BbsI GAAGAC 1 cut(s) 19
BbvI GCAGC 1 cut(s) 83
BccI CCATC 6 cut(s) 103, 139, 167, 283, 410, 529
BciT130I CCWGG 1 cut(s) 324
BcoDI GTCTC 2 cut(s) 375, 407
BisI GCNGC 1 cut(s) 72
BlsI GCNGC 1 cut(s) 73
Bme1390I CCNGG 1 cut(s) 324
BmiI GGNNCC 2 cut(s) 337, 570
BmrFI CCNGG 1 cut(s) 324
BmsI GCATC 2 cut(s) 58, 295
BpiI GAAGAC 1 cut(s) 19
BpuEI CTTGAG 3 cut(s) 242, 374, 501
BsaI GGTCTC 2 cut(s) 375, 407
BsaJI CCNNGG 1 cut(s) 339
BsaXI ACNNNNNCTCC 2 cut(s) 120, 150
Bsc4I CCNNNNNNNGG 1 cut(s) 582
Bse1I ACTGG 2 cut(s) 99, 395
Bse3DI GCAATG 1 cut(s) 312
BseBI CCWGG 1 cut(s) 324
BseDI CCNNGG 1 cut(s) 339
BseGI GGATG 2 cut(s) 185, 540
BseLI CCNNNNNNNGG 1 cut(s) 582
BseMI GCAATG 1 cut(s) 312
BseMII CTCAG 2 cut(s) 276, 386
BseNI ACTGG 2 cut(s) 99, 395
BseRI GAGGAG 1 cut(s) 141
BseXI GCAGC 1 cut(s) 83
BshFI GGCC 2 cut(s) 48, 141
BshNI GGYRCC 1 cut(s) 568
BslFI GGGAC 1 cut(s) 100
BslI CCNNNNNNNGG 1 cut(s) 582
BsmAI GTCTC 2 cut(s) 375, 407
BsmFI GGGAC 1 cut(s) 100
BsnI GGCC 2 cut(s) 48, 141
Bso31I GGTCTC 2 cut(s) 375, 407
Bsp19I CCATGG 1 cut(s) 339
BspANI GGCC 2 cut(s) 48, 141
BspCNI CTCAG 2 cut(s) 277, 385
BspLI GGNNCC 2 cut(s) 337, 570
BspQI GCTCTTC 1 cut(s) 81
BspT107I GGYRCC 1 cut(s) 568
BspTNI GGTCTC 2 cut(s) 375, 407
BsrDI GCAATG 1 cut(s) 312
BsrI ACTGG 2 cut(s) 99, 395
BssECI CCNNGG 1 cut(s) 339
BssT1I CCWWGG 1 cut(s) 339
Bst2UI CCWGG 1 cut(s) 324
Bst4CI ACNGT 1 cut(s) 166
Bst6I CTCTTC 2 cut(s) 81, 339
BstAPI GCANNNNNTGC 1 cut(s) 512
BstC8I GCNNGC 1 cut(s) 434
BstDEI CTNAG 2 cut(s) 285, 372
BstDSI CCRYGG 1 cut(s) 339
BstF5I GGATG 2 cut(s) 185, 540
BstMAI GTCTC 2 cut(s) 375, 407
BstMWI GCNNNNNNNGC 4 cut(s) 290, 299, 314, 512
BstNI CCWGG 1 cut(s) 324
BstSCI CCNGG 1 cut(s) 322
BstV1I GCAGC 1 cut(s) 83
BstV2I GAAGAC 1 cut(s) 19
BsuRI GGCC 2 cut(s) 48, 141
BtgI CCRYGG 1 cut(s) 339
BtsCI GGATG 2 cut(s) 185, 540
BtsIMutI CAGTG 2 cut(s) 70, 402
Cac8I GCNNGC 1 cut(s) 434
CviAII CATG 6 cut(s) 185, 272, 340, 366, 386, 602
DdeI CTNAG 2 cut(s) 285, 372
Eam1104I CTCTTC 2 cut(s) 81, 339
EarI CTCTTC 2 cut(s) 81, 339
Eco130I CCWWGG 1 cut(s) 339
Eco147I AGGCCT 1 cut(s) 141
Eco31I GGTCTC 2 cut(s) 375, 407
Eco32I GATATC 1 cut(s) 228
EcoRII CCWGG 1 cut(s) 322
EcoRV GATATC 1 cut(s) 228
EcoT14I CCWWGG 1 cut(s) 339
EcoT22I ATGCAT 1 cut(s) 273
ErhI CCWWGG 1 cut(s) 339
FaeI CATG 6 cut(s) 188, 275, 343, 369, 389, 605
FalI AAGNNNNNCTT 2 cut(s) 336, 368
FaqI GGGAC 1 cut(s) 100
FatI CATG 6 cut(s) 184, 271, 339, 365, 385, 601
Fnu4HI GCNGC 1 cut(s) 72
FokI GGATG 2 cut(s) 192, 547
Fsp4HI GCNGC 1 cut(s) 72
GluI GCNGC 1 cut(s) 72
HaeIII GGCC 2 cut(s) 48, 141
Hin1II CATG 6 cut(s) 188, 275, 343, 369, 389, 605
HinfI GANTC 2 cut(s) 88, 381
Hpy188I TCNGA 1 cut(s) 265
Hpy188III TCNNGA 1 cut(s) 518
HpyAV CCTTC 2 cut(s) 274, 458
HpyCH4III ACNGT 1 cut(s) 166
HpyCH4V TGCA 7 cut(s) 71, 271, 317, 485, 506, 556, 605
HpyF10VI GCNNNNNNNGC 4 cut(s) 290, 299, 314, 512
HpyF3I CTNAG 2 cut(s) 285, 372
Hsp92II CATG 6 cut(s) 188, 275, 343, 369, 389, 605
LguI GCTCTTC 1 cut(s) 81
LpnPI CCDG 8 cut(s) 30, 80, 155, 216, 309, 336, 408, 568
Lsp1109I GCAGC 1 cut(s) 83
LweI GCATC 2 cut(s) 58, 295
MboII GAAGA 6 cut(s) 19, 68, 118, 356, 473, 605
MluCI AATT 3 cut(s) 40, 235, 475
MlyI GAGTC 1 cut(s) 82
MnlI CCTC 5 cut(s) 96, 119, 122, 525, 532
Mph1103I ATGCAT 1 cut(s) 273
MroXI GAANNNNTTC 1 cut(s) 40
MseI TTAA 2 cut(s) 407, 474
MspR9I CCNGG 1 cut(s) 324
MvaI CCWGG 1 cut(s) 324
MwoI GCNNNNNNNGC 4 cut(s) 290, 299, 314, 512
NcoI CCATGG 1 cut(s) 339
NlaIII CATG 6 cut(s) 188, 275, 343, 369, 389, 605
NlaIV GGNNCC 2 cut(s) 337, 570
NsiI ATGCAT 1 cut(s) 273
PceI AGGCCT 1 cut(s) 141
PciSI GCTCTTC 1 cut(s) 81
PdmI GAANNNNTTC 1 cut(s) 40
PfeI GAWTC 1 cut(s) 381
PkrI GCNGC 1 cut(s) 73
PleI GAGTC 1 cut(s) 82
PpsI GAGTC 1 cut(s) 82
PshBI ATTAAT 1 cut(s) 474
Psp6I CCWGG 1 cut(s) 322
PspGI CCWGG 1 cut(s) 322
PspN4I GGNNCC 2 cut(s) 337, 570
SapI GCTCTTC 1 cut(s) 81
SaqAI TTAA 2 cut(s) 407, 474
SatI GCNGC 1 cut(s) 72
SchI GAGTC 1 cut(s) 82
ScrFI CCNGG 1 cut(s) 324
SetI ASST 5 cut(s) 76, 378, 525, 553, 584
SfaNI GCATC 2 cut(s) 58, 295
SmlI CTYRAG 3 cut(s) 221, 353, 516
SmoI CTYRAG 3 cut(s) 221, 353, 516
Sse9I AATT 3 cut(s) 40, 235, 475
SseBI AGGCCT 1 cut(s) 141
SspI AATATT 1 cut(s) 412
StuI AGGCCT 1 cut(s) 141
StyD4I CCNGG 1 cut(s) 322
StyI CCWWGG 1 cut(s) 339
TaaI ACNGT 1 cut(s) 166
TasI AATT 3 cut(s) 40, 235, 475
TfiI GAWTC 1 cut(s) 381
Tru1I TTAA 2 cut(s) 407, 474
Tru9I TTAA 2 cut(s) 407, 474
TscAI CASTG 2 cut(s) 70, 402
TseI GCWGC 1 cut(s) 71
TspDTI ATGAA 2 cut(s) 288, 301
TspRI CASTG 2 cut(s) 70, 402
VspI ATTAAT 1 cut(s) 474
XcmI CCANNNNNNNNNTGG 1 cut(s) 579
XmnI GAANNNNTTC 1 cut(s) 40
Zsp2I ATGCAT 1 cut(s) 273
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.