pycom03g00550

Cytokinin riboside 5'-monophosphate phosphoribohydrolase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0001203
Physical Location & Seq
Forward (+)
441846 .. 442219
374 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g00550.2

Sequence Viewer

Length: 207 bp
ATGCAATTGATGGGTAAGTTCAAAAGGATGTGTGTATTTTGTGGAAGTAATTCAGGGCACAGAAAGATATTCAGTGATGCAGCTCTTCAACTTGGGAAAGAACTGGTGGAGAGGAAGATGGATTTGGTGTATGGAGGAGGAAGTGTAGGGTTGATGGGGTTGGTTTCTCAAACAGTTTATGATGGCGGATGTCATGTTCTTGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lysine_decarbox

Protein Analysis

69

Amino Acids

7.31

Weight (kDa)

8.96

Isoelectric Point (pI)

27.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 186
AgsI TTSAA 2 cut(s) 22, 89
AjuI GAANNNNNNNTTGG 2 cut(s) 107, 139
AloI GAACNNNNNNTCC 1 cut(s) 180
AluBI AGCT 1 cut(s) 83
AluI AGCT 1 cut(s) 83
ApeKI GCWGC 1 cut(s) 80
Asp700I GAANNNNTTC 1 cut(s) 49
BaeGI GKGCMC 1 cut(s) 60
BbvI GCAGC 1 cut(s) 92
BccI CCATC 4 cut(s) 4, 112, 148, 176
BisI GCNGC 1 cut(s) 81
BlsI GCNGC 1 cut(s) 82
BmsI GCATC 1 cut(s) 67
BsaXI ACNNNNNCTCC 2 cut(s) 129, 159
Bse1I ACTGG 1 cut(s) 108
BseGI GGATG 2 cut(s) 33, 194
BseNI ACTGG 1 cut(s) 108
BseRI GAGGAG 1 cut(s) 150
BseSI GKGCMC 1 cut(s) 60
BseXI GCAGC 1 cut(s) 92
Bsp1286I GDGCHC 1 cut(s) 60
BspACI CCGC 1 cut(s) 186
BspQI GCTCTTC 1 cut(s) 90
BsrI ACTGG 1 cut(s) 108
Bst4CI ACNGT 1 cut(s) 175
Bst6I CTCTTC 1 cut(s) 90
BstF5I GGATG 2 cut(s) 33, 194
BstSLI GKGCMC 1 cut(s) 60
BstV1I GCAGC 1 cut(s) 92
BtsCI GGATG 2 cut(s) 33, 194
BtsIMutI CAGTG 1 cut(s) 79
CviAII CATG 1 cut(s) 194
CviJI RGCY 1 cut(s) 83
CviKI_1 RGCY 1 cut(s) 83
Eam1104I CTCTTC 1 cut(s) 90
EarI CTCTTC 1 cut(s) 90
EciI GGCGGA 1 cut(s) 201
FaeI CATG 1 cut(s) 197
FaiI YATR 3 cut(s) 132, 180, 195
FatI CATG 1 cut(s) 193
Fnu4HI GCNGC 1 cut(s) 81
FokI GGATG 2 cut(s) 40, 201
Fsp4HI GCNGC 1 cut(s) 81
GluI GCNGC 1 cut(s) 81
Hin1II CATG 1 cut(s) 197
HpyCH4III ACNGT 1 cut(s) 175
HpyCH4V TGCA 2 cut(s) 4, 80
Hsp92II CATG 1 cut(s) 197
LguI GCTCTTC 1 cut(s) 90
LpnPI CCDG 2 cut(s) 39, 89
Lsp1109I GCAGC 1 cut(s) 92
LweI GCATC 1 cut(s) 67
MboII GAAGA 2 cut(s) 77, 127
MfeI CAATTG 1 cut(s) 5
MhlI GDGCHC 1 cut(s) 60
MluCI AATT 2 cut(s) 5, 49
MnlI CCTC 3 cut(s) 105, 128, 131
MroXI GAANNNNTTC 1 cut(s) 49
MunI CAATTG 1 cut(s) 5
NlaIII CATG 1 cut(s) 197
PciSI GCTCTTC 1 cut(s) 90
PdmI GAANNNNTTC 1 cut(s) 49
PkrI GCNGC 1 cut(s) 82
SapI GCTCTTC 1 cut(s) 90
SatI GCNGC 1 cut(s) 81
SduI GDGCHC 1 cut(s) 60
SetI ASST 1 cut(s) 85
SfaNI GCATC 1 cut(s) 67
SgeI CNNG 3 cut(s) 66, 104, 116
Sse9I AATT 2 cut(s) 5, 49
SsiI CCGC 1 cut(s) 186
TaaI ACNGT 1 cut(s) 175
TasI AATT 2 cut(s) 5, 49
TscAI CASTG 1 cut(s) 79
TseI GCWGC 1 cut(s) 80
TspRI CASTG 1 cut(s) 79
XmnI GAANNNNTTC 1 cut(s) 49
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.