Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005455.1

Orthogroup ID

OG0001203

Physical Location & Seq

Genomic Coordinates Reverse (-)

16498 .. 18250

Gene Structure 1753 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005455.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

atggagatgattcaagaacaacaacaacaacaacaacaagagggtgtaatgaaatcttcaagattcaagcgtatctgtgttttctgtggtagcagtgctggaaagaacccaagttatcagcttgctgctgttcaacttggaaaacaactggttgaaaggaacattgacttggtttatggaggagggagcattggtttgatgggtcaggtctcccaagctgtttatgatggtggtcgccacgtgttgggagtaattcccaaaactctcatgccaagagagatcactggagagcctgtgggagaagtaagagctgtatctggtatgcaccagcgcaaagcggaaatggctcgccaagctgatgccttcgttgccttgccaggtggctatggtaccttggaagaactcttggaagtgatcacttgggctcagttgggaattcatgagaaaccagtggggttgttaaatgttgatgggtactacaactcacttttaaccttcatagacaacgctgtggatgaaggtttcattgaccctgcagctaggcacattattgtgtctgccccaacggctcaggaactcatgtgcaagctagaggaatatactcctaagcattctgggctaagttgggagaaagagcaacaactggaatacactgcaaagtcagacattgctcgttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lysine_decarbox

Protein Analysis

225

Amino Acids

24.75

Weight (kDa)

5.43

Isoelectric Point (pI)

40.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001203)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11950 AT5G11950 AT5G11950 AT5G11950 AT5G26140 AT5G26140 AT5G26140
fragaria_vesca	FvH4_2g31610 FvH4_2g31610 FvH4_2g31610 FvH4_2g38680 FvH4_2g38680 FvH4_3g04550 FvH4_3g04550 FvH4_3g04550
malus_domestica	MD03G1005300.v1.1 MD08G1014400.v1.1 MD08G1064800.v1.1 MD11G1007900.v1.1 MD15G1013800.v1.1 MD15G1056800.v1.1
prunus_persica	Prupe.1G367500_v2.0.a1 Prupe.1G409400_v2.0.a1 Prupe.1G409400_v2.0.a1 Prupe.1G409400_v2.0.a1 Prupe.1G409400_v2.0.a1 Prupe.1G409400_v2.0.a1 Prupe.1G409400_v2.0.a1 Prupe.1G409400_v2.0.a1 Prupe.6G005100_v2.0.a1 Prupe.6G005100_v2.0.a1
pyrus_communis	pycom03g00550 pycom08g01300 pycom08g05310 pycom11g00540 pycom15g01200 pycom15g05320
rosa_chinensis	RchiOBHm_Chr6g0302631 RchiOBHm_Chr6g0311211
rosa_laevigata	RLG00000010427 RLG00000011154
rosa_multiflora	Rmu_co8501517.1_g000001 Rmu_sc0005455.1_g000005
rosa_roxburghii	Rroxscaffold_7G00157900 Rroxscaffold_7G00165490
rosa_rugosa	Rorug06G0315600 Rorug06G0386400 Rorug06G0386500
rosa_samantha	Rh6AG428900 Rh6BG473600 Rh6BG511200 Rh6CG441200 Rh6CG517000 Rh6DG503500
rosa_wichuraiana	Rw6G037120 Rw6G043590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	389
AccB1I	GGYRCC	1 cut(s)	389
AccB7I	CCANNNNNTGG	1 cut(s)	244
AciI	CCGC	1 cut(s)	338
AcsI	RAATTY	1 cut(s)	435
AcvI	CACGTG	1 cut(s)	241
AfaI	GTAC	2 cut(s)	391, 476
AfiI	CCNNNNNNNGG	1 cut(s)	244
AflIII	ACRYGT	1 cut(s)	240
AgsI	TTSAA	5 cut(s)	14, 60, 67, 134, 155
AjnI	CCWGG	1 cut(s)	376
AjuI	GAANNNNNNNTTGG	2 cut(s)	152, 184
AluBI	AGCT	6 cut(s)	121, 218, 311, 356, 539, 589
AluI	AGCT	6 cut(s)	121, 218, 311, 356, 539, 589
Alw26I	GTCTC	1 cut(s)	214
ApeKI	GCWGC	2 cut(s)	125, 536
ApoI	RAATTY	1 cut(s)	435
Asp718I	GGTACC	1 cut(s)	389
AspLEI	GCGC	1 cut(s)	333
BanI	GGYRCC	1 cut(s)	389
BanII	GRGCYC	1 cut(s)	427
BbrPI	CACGTG	1 cut(s)	241
BbvI	GCAGC	2 cut(s)	112, 548
BccI	CCATC	3 cut(s)	193, 221, 464
BceAI	ACGGC	1 cut(s)	582
BciT130I	CCWGG	1 cut(s)	378
BclI	TGATCA	1 cut(s)	414
BcoDI	GTCTC	1 cut(s)	214
BfaI	CTAG	2 cut(s)	540, 590
BfmI	CTRYAG	1 cut(s)	534
BglI	GCCNNNNNGGC	1 cut(s)	566
BisI	GCNGC	2 cut(s)	126, 537
BlsI	GCNGC	2 cut(s)	127, 538
Bme1390I	CCNGG	1 cut(s)	378
BmiI	GGNNCC	1 cut(s)	391
BmrFI	CCNGG	1 cut(s)	378
BmsI	GCATC	1 cut(s)	349
BpmI	CTGGAG	1 cut(s)	306
Bpu10I	CCTNAGC	2 cut(s)	570, 606
BsaAI	YACGTR	1 cut(s)	241
BsaI	GGTCTC	1 cut(s)	214
BsaJI	CCNNGG	1 cut(s)	393
BsaXI	ACNNNNNCTCC	4 cut(s)	178, 208, 279, 309
Bsc4I	CCNNNNNNNGG	1 cut(s)	244
Bse1I	ACTGG	4 cut(s)	153, 289, 449, 648
Bse3DI	GCAATG	1 cut(s)	666
BseBI	CCWGG	1 cut(s)	378
BseDI	CCNNGG	1 cut(s)	393
BseGI	GGATG	1 cut(s)	520
BseLI	CCNNNNNNNGG	1 cut(s)	244
BseMI	GCAATG	1 cut(s)	666
BseMII	CTCAG	2 cut(s)	440, 584
BseNI	ACTGG	4 cut(s)	153, 289, 449, 648
BseRI	GAGGAG	1 cut(s)	195
BseXI	GCAGC	2 cut(s)	112, 548
BshNI	GGYRCC	1 cut(s)	389
BslI	CCNNNNNNNGG	1 cut(s)	244
BsmAI	GTCTC	1 cut(s)	214
BsmI	GAATGC	1 cut(s)	610
Bso31I	GGTCTC	1 cut(s)	214
Bsp1286I	GDGCHC	1 cut(s)	427
Bsp143I	GATC	2 cut(s)	279, 414
BspACI	CCGC	1 cut(s)	338
BspCNI	CTCAG	2 cut(s)	439, 583
BspHI	TCATGA	1 cut(s)	439
BspLI	GGNNCC	1 cut(s)	391
BspMAI	CTGCAG	1 cut(s)	538
BspT107I	GGYRCC	1 cut(s)	389
BspTNI	GGTCTC	1 cut(s)	214
BsrDI	GCAATG	1 cut(s)	666
BsrI	ACTGG	4 cut(s)	153, 289, 449, 648
BssECI	CCNNGG	1 cut(s)	393
BssMI	GATC	2 cut(s)	279, 414
BssT1I	CCWWGG	1 cut(s)	393
Bst2UI	CCWGG	1 cut(s)	378
BstBAI	YACGTR	1 cut(s)	241
BstC8I	GCNNGC	3 cut(s)	123, 349, 587
BstDEI	CTNAG	4 cut(s)	426, 570, 606, 620
BstF5I	GGATG	1 cut(s)	520
BstHHI	GCGC	1 cut(s)	333
BstKTI	GATC	2 cut(s)	282, 417
BstMAI	GTCTC	1 cut(s)	214
BstMBI	GATC	2 cut(s)	279, 414
BstMWI	GCNNNNNNNGC	5 cut(s)	344, 353, 368, 566, 616
BstNI	CCWGG	1 cut(s)	378
BstSCI	CCNGG	1 cut(s)	376
BstSFI	CTRYAG	1 cut(s)	534
BstV1I	GCAGC	2 cut(s)	112, 548
BtsCI	GGATG	1 cut(s)	520
BtsI	GCAGTG	2 cut(s)	100, 651
BtsIMutI	CAGTG	4 cut(s)	100, 282, 456, 651
Cac8I	GCNNGC	3 cut(s)	123, 349, 587
CciI	TCATGA	1 cut(s)	439
CfoI	GCGC	1 cut(s)	333
Csp6I	GTAC	2 cut(s)	390, 475
CviAII	CATG	3 cut(s)	268, 440, 580
CviQI	GTAC	2 cut(s)	390, 475
DdeI	CTNAG	4 cut(s)	426, 570, 606, 620
DpnI	GATC	2 cut(s)	281, 416
DpnII	GATC	2 cut(s)	279, 414
Eco130I	CCWWGG	1 cut(s)	393
Eco24I	GRGCYC	1 cut(s)	427
Eco31I	GGTCTC	1 cut(s)	214
Eco72I	CACGTG	1 cut(s)	241
EcoRI	GAATTC	1 cut(s)	435
EcoRII	CCWGG	1 cut(s)	376
EcoT14I	CCWWGG	1 cut(s)	393
EcoT38I	GRGCYC	1 cut(s)	427
ErhI	CCWWGG	1 cut(s)	393
FaeI	CATG	3 cut(s)	271, 443, 583
FaiI	YATR	9 cut(s)	177, 225, 269, 323, 387, 441, 500, 581, 600
FatI	CATG	3 cut(s)	267, 439, 579
FbaI	TGATCA	1 cut(s)	414
Fnu4HI	GCNGC	2 cut(s)	126, 537
FokI	GGATG	1 cut(s)	527
FriOI	GRGCYC	1 cut(s)	427
Fsp4HI	GCNGC	2 cut(s)	126, 537
FspBI	CTAG	2 cut(s)	540, 590
GlaI	GCGC	1 cut(s)	332
GluI	GCNGC	2 cut(s)	126, 537
GsuI	CTGGAG	1 cut(s)	306
HhaI	GCGC	1 cut(s)	333
Hin1II	CATG	3 cut(s)	271, 443, 583
Hin6I	GCGC	1 cut(s)	331
HinP1I	GCGC	1 cut(s)	331
HinfI	GANTC	2 cut(s)	10, 63
Hpy188I	TCNGA	1 cut(s)	664
Hpy188III	TCNNGA	4 cut(s)	14, 60, 440, 572
HpyAV	CCTTC	3 cut(s)	373, 505, 512
HpyCH4IV	ACGT	1 cut(s)	240
HpyCH4V	TGCA	4 cut(s)	325, 536, 585, 656
HpyF10VI	GCNNNNNNNGC	5 cut(s)	344, 353, 368, 566, 616
HpyF3I	CTNAG	4 cut(s)	426, 570, 606, 620
HpySE526I	ACGT	1 cut(s)	240
Hsp92II	CATG	3 cut(s)	271, 443, 583
HspAI	GCGC	1 cut(s)	331
KpnI	GGTACC	1 cut(s)	393
Ksp22I	TGATCA	1 cut(s)	414
Kzo9I	GATC	2 cut(s)	279, 414
LmnI	GCTCC	1 cut(s)	186
Lsp1109I	GCAGC	2 cut(s)	112, 548
LweI	GCATC	1 cut(s)	349
MaeI	CTAG	2 cut(s)	540, 590
MaeII	ACGT	1 cut(s)	240
MalI	GATC	2 cut(s)	281, 416
MboI	GATC	2 cut(s)	279, 414
MboII	GAAGA	2 cut(s)	48, 410
MhlI	GDGCHC	1 cut(s)	427
MluCI	AATT	2 cut(s)	252, 435
MnlI	CCTC	4 cut(s)	34, 173, 176, 586
MseI	TTAA	2 cut(s)	461, 491
MslI	CAYNNNNRTG	1 cut(s)	551
MspR9I	CCNGG	1 cut(s)	378
Mva1269I	GAATGC	1 cut(s)	610
MvaI	CCWGG	1 cut(s)	378
MwoI	GCNNNNNNNGC	5 cut(s)	344, 353, 368, 566, 616
NdeII	GATC	2 cut(s)	279, 414
NlaIII	CATG	3 cut(s)	271, 443, 583
NlaIV	GGNNCC	1 cut(s)	391
PagI	TCATGA	1 cut(s)	439
PctI	GAATGC	1 cut(s)	610
PfeI	GAWTC	2 cut(s)	10, 63
PflMI	CCANNNNNTGG	1 cut(s)	244
PkrI	GCNGC	2 cut(s)	127, 538
PmaCI	CACGTG	1 cut(s)	241
PmlI	CACGTG	1 cut(s)	241
Ppu21I	YACGTR	1 cut(s)	241
Psp6I	CCWGG	1 cut(s)	376
PspCI	CACGTG	1 cut(s)	241
PspGI	CCWGG	1 cut(s)	376
PspN4I	GGNNCC	1 cut(s)	391
PstI	CTGCAG	1 cut(s)	538
RsaI	GTAC	2 cut(s)	391, 476
RsaNI	GTAC	2 cut(s)	390, 475
RseI	CAYNNNNRTG	1 cut(s)	551
SaqAI	TTAA	2 cut(s)	461, 491
SatI	GCNGC	2 cut(s)	126, 537
Sau3AI	GATC	2 cut(s)	279, 414
ScrFI	CCNGG	1 cut(s)	378
SduI	GDGCHC	1 cut(s)	427
SfaNI	GCATC	1 cut(s)	349
SfcI	CTRYAG	1 cut(s)	534
SmiMI	CAYNNNNRTG	1 cut(s)	551
Sse9I	AATT	2 cut(s)	252, 435
SsiI	CCGC	1 cut(s)	338
SspMI	CTAG	2 cut(s)	540, 590
StyD4I	CCNGG	1 cut(s)	376
StyI	CCWWGG	1 cut(s)	393
TaiI	ACGT	1 cut(s)	243
TasI	AATT	2 cut(s)	252, 435
TfiI	GAWTC	2 cut(s)	10, 63
Tru1I	TTAA	2 cut(s)	461, 491
Tru9I	TTAA	2 cut(s)	461, 491
TscAI	CASTG	4 cut(s)	100, 289, 456, 658
TseI	GCWGC	2 cut(s)	125, 536
TspDTI	ATGAA	5 cut(s)	65, 428, 487, 514, 531
TspRI	CASTG	4 cut(s)	100, 289, 456, 658
Van91I	CCANNNNNTGG	1 cut(s)	244
XapI	RAATTY	1 cut(s)	435
XspI	CTAG	2 cut(s)	540, 590

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.