RchiOBHm_Chr6g0302631

Cytokinin riboside 5'-monophosphate phosphoribohydrolase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0001203
Physical Location & Seq
Forward (+)
62704111 .. 62706616
2506 bp
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UTR
Exon/CDS
Intron
PRQ27184

Sequence Viewer

Length: 669 bp
ATGGAGATGATTCAAGAACAACAACAACAAGAGGGTGTAATGAAATCTTCAAGATTCAAGCGTATCTGTGTTTTCTGTGGTAGCAGTGCTGGAAAGAACCCAAGTTATCAGCTTGCTGCTGTTCAACTTGGAAAACAACTGGTTGAAAGGAACATTGACTTGGTTTATGGAGGAGGGAGCATTGGTTTGATGGGTCAGGTCTCCCAAGCTGTTTATGATGGTGGTCGCCACGTGTTGGGAGTAATTCCCAGAACTCTCATGCCAAGAGAGATCACTGGAGAGCCTGTGGGAGAAGTAAGAGCTGTGTCTGGTATGCACCAGCGCAAAGCGGAAATGGCTCGCCAAGCTGATGCCTTTGTTGCCTTGCCAGGTGGCTATGGTACCTTAGAAGAACTCTTGGAAGTGATCACTTGGGCTCAGTTGGGAATTCATGAGAAACCAGTGGGGTTGTTAAATGTTGATGGGTACTACAACTCACTTTTAACCTTCATAGACAACGCTGTGGATGAAGGTTTCATTGACCCTGCAGCTAGGCACATTATTGTGTCTGCCCCAACTGCTCAAGAACTCATGTGCAAACTAGAGGAATATACTCCTAAGCATTCTGGGCTAAGTTGGGAGAAAGAGCAACAACTGGAATACACTGCAAAGTCAGACATTGCTCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lysine_decarbox

Protein Analysis

222

Amino Acids

24.4

Weight (kDa)

5.43

Isoelectric Point (pI)

38.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LDcluster4 PF18306 27 - 152 1.8e-13 SLOG cluster4 family
Lysine_decarbox PF03641 64 - 193 4e-48 Possible lysine decarboxylase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 380
AccB1I GGYRCC 1 cut(s) 380
AccB7I CCANNNNNTGG 1 cut(s) 235
AciI CCGC 1 cut(s) 329
AcsI RAATTY 1 cut(s) 426
AcvI CACGTG 1 cut(s) 232
AfaI GTAC 2 cut(s) 382, 467
AfiI CCNNNNNNNGG 1 cut(s) 235
AflIII ACRYGT 1 cut(s) 231
AgsI TTSAA 5 cut(s) 14, 51, 58, 125, 146
AjnI CCWGG 1 cut(s) 367
AjuI GAANNNNNNNTTGG 2 cut(s) 143, 175
AluBI AGCT 5 cut(s) 112, 209, 302, 347, 530
AluI AGCT 5 cut(s) 112, 209, 302, 347, 530
Alw26I GTCTC 1 cut(s) 205
ApeKI GCWGC 2 cut(s) 116, 527
ApoI RAATTY 1 cut(s) 426
Asp718I GGTACC 1 cut(s) 380
AspLEI GCGC 1 cut(s) 324
BanI GGYRCC 1 cut(s) 380
BanII GRGCYC 1 cut(s) 418
BbrPI CACGTG 1 cut(s) 232
BbvI GCAGC 2 cut(s) 103, 539
BccI CCATC 3 cut(s) 184, 212, 455
BciT130I CCWGG 1 cut(s) 369
BclI TGATCA 1 cut(s) 405
BcoDI GTCTC 1 cut(s) 205
BfaI CTAG 2 cut(s) 531, 581
BfmI CTRYAG 1 cut(s) 525
BisI GCNGC 2 cut(s) 117, 528
BlsI GCNGC 2 cut(s) 118, 529
Bme1390I CCNGG 1 cut(s) 369
BmiI GGNNCC 1 cut(s) 382
BmrFI CCNGG 1 cut(s) 369
BmsI GCATC 1 cut(s) 340
BpmI CTGGAG 1 cut(s) 297
Bpu10I CCTNAGC 1 cut(s) 597
BpuEI CTTGAG 1 cut(s) 546
BsaAI YACGTR 1 cut(s) 232
BsaI GGTCTC 1 cut(s) 205
BsaXI ACNNNNNCTCC 4 cut(s) 169, 199, 270, 300
Bsc4I CCNNNNNNNGG 1 cut(s) 235
Bse1I ACTGG 4 cut(s) 144, 280, 440, 639
Bse3DI GCAATG 1 cut(s) 657
BseBI CCWGG 1 cut(s) 369
BseGI GGATG 1 cut(s) 511
BseLI CCNNNNNNNGG 1 cut(s) 235
BseMI GCAATG 1 cut(s) 657
BseMII CTCAG 1 cut(s) 431
BseNI ACTGG 4 cut(s) 144, 280, 440, 639
BseRI GAGGAG 1 cut(s) 186
BseXI GCAGC 2 cut(s) 103, 539
BshNI GGYRCC 1 cut(s) 380
BslI CCNNNNNNNGG 1 cut(s) 235
BsmAI GTCTC 1 cut(s) 205
BsmI GAATGC 1 cut(s) 601
Bso31I GGTCTC 1 cut(s) 205
Bsp1286I GDGCHC 1 cut(s) 418
Bsp143I GATC 2 cut(s) 270, 405
BspACI CCGC 1 cut(s) 329
BspCNI CTCAG 1 cut(s) 430
BspHI TCATGA 1 cut(s) 430
BspLI GGNNCC 1 cut(s) 382
BspMAI CTGCAG 1 cut(s) 529
BspT107I GGYRCC 1 cut(s) 380
BspTNI GGTCTC 1 cut(s) 205
BsrDI GCAATG 1 cut(s) 657
BsrI ACTGG 4 cut(s) 144, 280, 440, 639
BssMI GATC 2 cut(s) 270, 405
Bst2UI CCWGG 1 cut(s) 369
BstBAI YACGTR 1 cut(s) 232
BstC8I GCNNGC 2 cut(s) 114, 340
BstDEI CTNAG 4 cut(s) 385, 417, 597, 611
BstF5I GGATG 1 cut(s) 511
BstHHI GCGC 1 cut(s) 324
BstKTI GATC 2 cut(s) 273, 408
BstMAI GTCTC 1 cut(s) 205
BstMBI GATC 2 cut(s) 270, 405
BstMWI GCNNNNNNNGC 5 cut(s) 335, 344, 359, 557, 607
BstNI CCWGG 1 cut(s) 369
BstSCI CCNGG 1 cut(s) 367
BstSFI CTRYAG 1 cut(s) 525
BstV1I GCAGC 2 cut(s) 103, 539
BtsCI GGATG 1 cut(s) 511
BtsI GCAGTG 2 cut(s) 91, 642
BtsIMutI CAGTG 4 cut(s) 91, 273, 447, 642
Cac8I GCNNGC 2 cut(s) 114, 340
CciI TCATGA 1 cut(s) 430
CfoI GCGC 1 cut(s) 324
Csp6I GTAC 2 cut(s) 381, 466
CviAII CATG 3 cut(s) 259, 431, 571
CviQI GTAC 2 cut(s) 381, 466
DdeI CTNAG 4 cut(s) 385, 417, 597, 611
DpnI GATC 2 cut(s) 272, 407
DpnII GATC 2 cut(s) 270, 405
Eco24I GRGCYC 1 cut(s) 418
Eco31I GGTCTC 1 cut(s) 205
Eco72I CACGTG 1 cut(s) 232
EcoRI GAATTC 1 cut(s) 426
EcoRII CCWGG 1 cut(s) 367
EcoT38I GRGCYC 1 cut(s) 418
FaeI CATG 3 cut(s) 262, 434, 574
FaiI YATR 9 cut(s) 168, 216, 260, 314, 378, 432, 491, 572, 591
FatI CATG 3 cut(s) 258, 430, 570
FbaI TGATCA 1 cut(s) 405
Fnu4HI GCNGC 2 cut(s) 117, 528
FokI GGATG 1 cut(s) 518
FriOI GRGCYC 1 cut(s) 418
Fsp4HI GCNGC 2 cut(s) 117, 528
FspBI CTAG 2 cut(s) 531, 581
GlaI GCGC 1 cut(s) 323
GluI GCNGC 2 cut(s) 117, 528
GsuI CTGGAG 1 cut(s) 297
HhaI GCGC 1 cut(s) 324
Hin1II CATG 3 cut(s) 262, 434, 574
Hin6I GCGC 1 cut(s) 322
HinP1I GCGC 1 cut(s) 322
HinfI GANTC 2 cut(s) 10, 54
Hpy188I TCNGA 1 cut(s) 655
Hpy188III TCNNGA 4 cut(s) 14, 51, 431, 563
HpyAV CCTTC 2 cut(s) 496, 503
HpyCH4IV ACGT 1 cut(s) 231
HpyCH4V TGCA 4 cut(s) 316, 527, 576, 647
HpyF10VI GCNNNNNNNGC 5 cut(s) 335, 344, 359, 557, 607
HpyF3I CTNAG 4 cut(s) 385, 417, 597, 611
HpySE526I ACGT 1 cut(s) 231
Hsp92II CATG 3 cut(s) 262, 434, 574
HspAI GCGC 1 cut(s) 322
KpnI GGTACC 1 cut(s) 384
Ksp22I TGATCA 1 cut(s) 405
Kzo9I GATC 2 cut(s) 270, 405
LmnI GCTCC 1 cut(s) 177
Lsp1109I GCAGC 2 cut(s) 103, 539
LweI GCATC 1 cut(s) 340
MaeI CTAG 2 cut(s) 531, 581
MaeII ACGT 1 cut(s) 231
MalI GATC 2 cut(s) 272, 407
MboI GATC 2 cut(s) 270, 405
MboII GAAGA 2 cut(s) 39, 401
MhlI GDGCHC 1 cut(s) 418
MluCI AATT 2 cut(s) 243, 426
MnlI CCTC 4 cut(s) 25, 164, 167, 577
MseI TTAA 2 cut(s) 452, 482
MslI CAYNNNNRTG 1 cut(s) 542
MspR9I CCNGG 1 cut(s) 369
Mva1269I GAATGC 1 cut(s) 601
MvaI CCWGG 1 cut(s) 369
MwoI GCNNNNNNNGC 5 cut(s) 335, 344, 359, 557, 607
NdeII GATC 2 cut(s) 270, 405
NlaIII CATG 3 cut(s) 262, 434, 574
NlaIV GGNNCC 1 cut(s) 382
PagI TCATGA 1 cut(s) 430
PctI GAATGC 1 cut(s) 601
PfeI GAWTC 2 cut(s) 10, 54
PflMI CCANNNNNTGG 1 cut(s) 235
PkrI GCNGC 2 cut(s) 118, 529
PmaCI CACGTG 1 cut(s) 232
PmlI CACGTG 1 cut(s) 232
Ppu21I YACGTR 1 cut(s) 232
Psp6I CCWGG 1 cut(s) 367
PspCI CACGTG 1 cut(s) 232
PspGI CCWGG 1 cut(s) 367
PspN4I GGNNCC 1 cut(s) 382
PstI CTGCAG 1 cut(s) 529
RsaI GTAC 2 cut(s) 382, 467
RsaNI GTAC 2 cut(s) 381, 466
RseI CAYNNNNRTG 1 cut(s) 542
SaqAI TTAA 2 cut(s) 452, 482
SatI GCNGC 2 cut(s) 117, 528
Sau3AI GATC 2 cut(s) 270, 405
ScrFI CCNGG 1 cut(s) 369
SduI GDGCHC 1 cut(s) 418
SfaNI GCATC 1 cut(s) 340
SfcI CTRYAG 1 cut(s) 525
SmiMI CAYNNNNRTG 1 cut(s) 542
SmlI CTYRAG 1 cut(s) 561
SmoI CTYRAG 1 cut(s) 561
Sse9I AATT 2 cut(s) 243, 426
SsiI CCGC 1 cut(s) 329
SspMI CTAG 2 cut(s) 531, 581
StyD4I CCNGG 1 cut(s) 367
TaiI ACGT 1 cut(s) 234
TasI AATT 2 cut(s) 243, 426
TfiI GAWTC 2 cut(s) 10, 54
Tru1I TTAA 2 cut(s) 452, 482
Tru9I TTAA 2 cut(s) 452, 482
TscAI CASTG 4 cut(s) 91, 280, 447, 649
TseI GCWGC 2 cut(s) 116, 527
TspDTI ATGAA 5 cut(s) 56, 419, 478, 505, 522
TspRI CASTG 4 cut(s) 91, 280, 447, 649
Van91I CCANNNNNTGG 1 cut(s) 235
XapI RAATTY 1 cut(s) 426
XspI CTAG 2 cut(s) 531, 581
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.