Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0001203

Physical Location & Seq

Genomic Coordinates Forward (+)

2605809 .. 2608029

Gene Structure 2221 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g04550.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGGTGAACATCCAAGAACAACATGAACAAGAGGGAGCAATGAAACCTTCAAGATTCAAGCGTGTCTGTGTTTTTTGTGGTAGCAGTGGTGGAAAGAACCCAAGTTATCAGCTTGCTGCTGTTGAACTTGGAAATGAACTGGTCCAAAGAAACATTGACTTGGTTTATGGAGGAGGGAGCCTTGGTTTGATGAGGCTAGTCGCACAAGCTGTACATGATGGTGGTCTCTACGTGTTGGGAGTAATTCTTAAAACTCTTATGTCAAAAGAGATCACCGGAGGGTCTGTAGGAGAAGTAAGAGTTGTATCTGGTATGCACGAGCGCAAAGCGGAAATGGCTCGCGAAGCTGATGCCTTTGTTGCCTTGCCAGGTGGCTATGGTACCTTAGAAGAATTCTTGGAAGTGATCAGTTGGGCTCAGTTGGGAATTCATCAGAAACCAGTGGGGTTGTTAAATGTTGATGGGTATTACAATTCACTTCTGACCTTCATAGACAATGCTGTAGGTGAAGGTTTCGTTTCCCCTGCAGCTAGGCACATTATTGTGTCTGCCCCAACTGCGCAGGAAGTAATGCGCAAACTAGAGGAATATGCTCCTCAGCATTCTGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lysine_decarbox

Protein Analysis

204

Amino Acids

21.87

Weight (kDa)

5.68

Isoelectric Point (pI)

40.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LDcluster4	PF18306	27 - 133	3.2e-13	SLOG cluster4 family
Lysine_decarbox	PF03641	64 - 149	1.1e-29	Possible lysine decarboxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001203)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11950 AT5G11950 AT5G11950 AT5G11950 AT5G26140 AT5G26140 AT5G26140
fragaria_vesca	FvH4_2g31610 FvH4_2g31610 FvH4_2g31610 FvH4_2g38680 FvH4_2g38680 FvH4_3g04550 FvH4_3g04550 FvH4_3g04550
malus_domestica	MD03G1005300.v1.1 MD08G1014400.v1.1 MD08G1064800.v1.1 MD11G1007900.v1.1 MD15G1013800.v1.1 MD15G1056800.v1.1
prunus_persica	Prupe.1G367500_v2.0.a1 Prupe.1G409400_v2.0.a1 Prupe.1G409400_v2.0.a1 Prupe.1G409400_v2.0.a1 Prupe.1G409400_v2.0.a1 Prupe.1G409400_v2.0.a1 Prupe.1G409400_v2.0.a1 Prupe.1G409400_v2.0.a1 Prupe.6G005100_v2.0.a1 Prupe.6G005100_v2.0.a1
pyrus_communis	pycom03g00550 pycom08g01300 pycom08g05310 pycom11g00540 pycom15g01200 pycom15g05320
rosa_chinensis	RchiOBHm_Chr6g0302631 RchiOBHm_Chr6g0311211
rosa_laevigata	RLG00000010427 RLG00000011154
rosa_multiflora	Rmu_co8501517.1_g000001 Rmu_sc0005455.1_g000005
rosa_roxburghii	Rroxscaffold_7G00157900 Rroxscaffold_7G00165490
rosa_rugosa	Rorug06G0315600 Rorug06G0386400 Rorug06G0386500
rosa_samantha	Rh6AG428900 Rh6BG473600 Rh6BG511200 Rh6CG441200 Rh6CG517000 Rh6DG503500
rosa_wichuraiana	Rw6G037120 Rw6G043590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	2 cut(s)	561, 575
Acc65I	GGTACC	1 cut(s)	380
AccB1I	GGYRCC	1 cut(s)	380
AccII	CGCG	1 cut(s)	342
AciI	CCGC	1 cut(s)	329
AcsI	RAATTY	2 cut(s)	392, 426
AfaI	GTAC	2 cut(s)	213, 382
AflIII	ACRYGT	1 cut(s)	231
AgsI	TTSAA	3 cut(s)	51, 58, 125
AjnI	CCWGG	1 cut(s)	367
AluBI	AGCT	4 cut(s)	112, 209, 347, 530
AluI	AGCT	4 cut(s)	112, 209, 347, 530
Alw26I	GTCTC	1 cut(s)	230
ApeKI	GCWGC	2 cut(s)	116, 527
ApoI	RAATTY	2 cut(s)	392, 426
Asp718I	GGTACC	1 cut(s)	380
AspLEI	GCGC	3 cut(s)	324, 562, 576
AspS9I	GGNCC	1 cut(s)	142
AsuHPI	GGTGA	3 cut(s)	16, 265, 518
AvaII	GGWCC	1 cut(s)	142
BanI	GGYRCC	1 cut(s)	380
BanII	GRGCYC	1 cut(s)	418
BauI	CACGAG	1 cut(s)	317
BbvCI	CCTCAGC	1 cut(s)	597
BbvI	GCAGC	2 cut(s)	103, 539
BccI	CCATC	2 cut(s)	212, 455
BcgI	CGANNNNNNTGC	2 cut(s)	332, 366
BciT130I	CCWGG	1 cut(s)	369
BclI	TGATCA	1 cut(s)	405
BcoDI	GTCTC	1 cut(s)	230
BfaI	CTAG	3 cut(s)	197, 531, 581
BfmI	CTRYAG	3 cut(s)	285, 501, 525
BisI	GCNGC	2 cut(s)	117, 528
BlsI	GCNGC	2 cut(s)	118, 529
Bme1390I	CCNGG	1 cut(s)	369
Bme18I	GGWCC	1 cut(s)	142
BmgT120I	GGNCC	1 cut(s)	142
BmiI	GGNNCC	2 cut(s)	179, 382
BmrFI	CCNGG	1 cut(s)	369
BmsI	GCATC	1 cut(s)	340
Bpu10I	CCTNAGC	1 cut(s)	597
BsaAI	YACGTR	1 cut(s)	232
BsaI	GGTCTC	1 cut(s)	230
BsaJI	CCNNGG	1 cut(s)	181
BsaWI	WCCGGW	1 cut(s)	275
BsaXI	ACNNNNNCTCC	4 cut(s)	169, 199, 270, 300
Bse1I	ACTGG	2 cut(s)	144, 440
Bse3DI	GCAATG	1 cut(s)	45
BseBI	CCWGG	1 cut(s)	369
BseDI	CCNNGG	1 cut(s)	181
BseGI	GGATG	1 cut(s)	9
BseMI	GCAATG	1 cut(s)	45
BseMII	CTCAG	2 cut(s)	431, 611
BseNI	ACTGG	2 cut(s)	144, 440
BseRI	GAGGAG	2 cut(s)	186, 585
BseXI	GCAGC	2 cut(s)	103, 539
Bsh1236I	CGCG	1 cut(s)	342
BshNI	GGYRCC	1 cut(s)	380
BsiSI	CCGG	1 cut(s)	276
BsmAI	GTCTC	1 cut(s)	230
BsmI	GAATGC	1 cut(s)	601
Bso31I	GGTCTC	1 cut(s)	230
Bsp1286I	GDGCHC	1 cut(s)	418
Bsp1407I	TGTACA	1 cut(s)	211
Bsp143I	GATC	2 cut(s)	270, 405
Bsp68I	TCGCGA	1 cut(s)	342
BspACI	CCGC	1 cut(s)	329
BspCNI	CTCAG	2 cut(s)	430, 610
BspFNI	CGCG	1 cut(s)	342
BspLI	GGNNCC	2 cut(s)	179, 382
BspMAI	CTGCAG	1 cut(s)	529
BspT107I	GGYRCC	1 cut(s)	380
BspTNI	GGTCTC	1 cut(s)	230
BsrDI	GCAATG	1 cut(s)	45
BsrGI	TGTACA	1 cut(s)	211
BsrI	ACTGG	2 cut(s)	144, 440
BssECI	CCNNGG	1 cut(s)	181
BssMI	GATC	2 cut(s)	270, 405
BssSI	CACGAG	1 cut(s)	317
BssT1I	CCWWGG	1 cut(s)	181
Bst2BI	CACGAG	1 cut(s)	317
Bst2UI	CCWGG	1 cut(s)	369
BstAUI	TGTACA	1 cut(s)	211
BstBAI	YACGTR	1 cut(s)	232
BstC8I	GCNNGC	2 cut(s)	114, 340
BstDEI	CTNAG	3 cut(s)	385, 417, 597
BstF5I	GGATG	1 cut(s)	9
BstFNI	CGCG	1 cut(s)	342
BstHHI	GCGC	3 cut(s)	324, 562, 576
BstKTI	GATC	2 cut(s)	273, 408
BstMAI	GTCTC	1 cut(s)	230
BstMBI	GATC	2 cut(s)	270, 405
BstMWI	GCNNNNNNNGC	4 cut(s)	335, 344, 359, 557
BstNI	CCWGG	1 cut(s)	369
BstSCI	CCNGG	1 cut(s)	367
BstSFI	CTRYAG	3 cut(s)	285, 501, 525
BstUI	CGCG	1 cut(s)	342
BstV1I	GCAGC	2 cut(s)	103, 539
BtsCI	GGATG	1 cut(s)	9
BtsI	GCAGTG	1 cut(s)	91
BtsIMutI	CAGTG	2 cut(s)	91, 447
BtuMI	TCGCGA	1 cut(s)	342
Cac8I	GCNNGC	2 cut(s)	114, 340
CfoI	GCGC	3 cut(s)	324, 562, 576
Cfr13I	GGNCC	1 cut(s)	142
Csp6I	GTAC	2 cut(s)	212, 381
CviAII	CATG	2 cut(s)	23, 215
CviJI	RGCY	9 cut(s)	112, 180, 196, 209, 338, 347, 375, 416, 530
CviKI_1	RGCY	9 cut(s)	112, 180, 196, 209, 338, 347, 375, 416, 530
CviQI	GTAC	2 cut(s)	212, 381
DdeI	CTNAG	3 cut(s)	385, 417, 597
DpnI	GATC	2 cut(s)	272, 407
DpnII	GATC	2 cut(s)	270, 405
Eco130I	CCWWGG	1 cut(s)	181
Eco24I	GRGCYC	1 cut(s)	418
Eco31I	GGTCTC	1 cut(s)	230
Eco47I	GGWCC	1 cut(s)	142
EcoRI	GAATTC	2 cut(s)	392, 426
EcoRII	CCWGG	1 cut(s)	367
EcoT14I	CCWWGG	1 cut(s)	181
EcoT38I	GRGCYC	1 cut(s)	418
ErhI	CCWWGG	1 cut(s)	181
FaeI	CATG	2 cut(s)	26, 218
FaiI	YATR	8 cut(s)	24, 168, 216, 260, 314, 378, 491, 591
FatI	CATG	2 cut(s)	22, 214
FbaI	TGATCA	1 cut(s)	405
Fnu4HI	GCNGC	2 cut(s)	117, 528
FriOI	GRGCYC	1 cut(s)	418
Fsp4HI	GCNGC	2 cut(s)	117, 528
FspBI	CTAG	3 cut(s)	197, 531, 581
FspI	TGCGCA	2 cut(s)	561, 575
GlaI	GCGC	3 cut(s)	323, 561, 575
GluI	GCNGC	2 cut(s)	117, 528
HapII	CCGG	1 cut(s)	276
HhaI	GCGC	3 cut(s)	324, 562, 576
Hin1II	CATG	2 cut(s)	26, 218
Hin6I	GCGC	3 cut(s)	322, 560, 574
HinP1I	GCGC	3 cut(s)	322, 560, 574
HinfI	GANTC	1 cut(s)	54
HpaII	CCGG	1 cut(s)	276
HphI	GGTGA	3 cut(s)	16, 265, 518
Hpy166II	GTNNAC	1 cut(s)	7
Hpy188I	TCNGA	2 cut(s)	435, 483
Hpy188III	TCNNGA	2 cut(s)	51, 341
Hpy8I	GTNNAC	1 cut(s)	7
HpyAV	CCTTC	3 cut(s)	57, 496, 503
HpyCH4IV	ACGT	1 cut(s)	231
HpyCH4V	TGCA	2 cut(s)	316, 527
HpyF10VI	GCNNNNNNNGC	4 cut(s)	335, 344, 359, 557
HpyF3I	CTNAG	3 cut(s)	385, 417, 597
HpySE526I	ACGT	1 cut(s)	231
Hsp92II	CATG	2 cut(s)	26, 218
HspAI	GCGC	3 cut(s)	322, 560, 574
KpnI	GGTACC	1 cut(s)	384
Ksp22I	TGATCA	1 cut(s)	405
Kzo9I	GATC	2 cut(s)	270, 405
LmnI	GCTCC	3 cut(s)	35, 177, 598
LpnPI	CCDG	9 cut(s)	125, 289, 294, 354, 381, 453, 537, 548, 591
Lsp1109I	GCAGC	2 cut(s)	103, 539
LweI	GCATC	1 cut(s)	340
MaeI	CTAG	3 cut(s)	197, 531, 581
MaeII	ACGT	1 cut(s)	231
MalI	GATC	2 cut(s)	272, 407
MboI	GATC	2 cut(s)	270, 405
MboII	GAAGA	1 cut(s)	401
MhlI	GDGCHC	1 cut(s)	418
MluCI	AATT	4 cut(s)	243, 392, 426, 472
MnlI	CCTC	7 cut(s)	25, 164, 167, 186, 272, 577, 606
MseI	TTAA	2 cut(s)	249, 452
MslI	CAYNNNNRTG	2 cut(s)	219, 542
MspI	CCGG	1 cut(s)	276
MspR9I	CCNGG	1 cut(s)	369
Mva1269I	GAATGC	1 cut(s)	601
MvaI	CCWGG	1 cut(s)	369
MvnI	CGCG	1 cut(s)	342
MwoI	GCNNNNNNNGC	4 cut(s)	335, 344, 359, 557
NdeII	GATC	2 cut(s)	270, 405
NlaIII	CATG	2 cut(s)	26, 218
NlaIV	GGNNCC	2 cut(s)	179, 382
NruI	TCGCGA	1 cut(s)	342
NsbI	TGCGCA	2 cut(s)	561, 575
PctI	GAATGC	1 cut(s)	601
PfeI	GAWTC	1 cut(s)	54
PkrI	GCNGC	2 cut(s)	118, 529
Ppu21I	YACGTR	1 cut(s)	232
Psp6I	CCWGG	1 cut(s)	367
PspGI	CCWGG	1 cut(s)	367
PspN4I	GGNNCC	2 cut(s)	179, 382
PspPI	GGNCC	1 cut(s)	142
PstI	CTGCAG	1 cut(s)	529
RruI	TCGCGA	1 cut(s)	342
RsaI	GTAC	2 cut(s)	213, 382
RsaNI	GTAC	2 cut(s)	212, 381
RseI	CAYNNNNRTG	2 cut(s)	219, 542
SaqAI	TTAA	2 cut(s)	249, 452
SatI	GCNGC	2 cut(s)	117, 528
Sau3AI	GATC	2 cut(s)	270, 405
Sau96I	GGNCC	1 cut(s)	142
ScrFI	CCNGG	1 cut(s)	369
SduI	GDGCHC	1 cut(s)	418
SfaNI	GCATC	1 cut(s)	340
SfcI	CTRYAG	3 cut(s)	285, 501, 525
SinI	GGWCC	1 cut(s)	142
SmiMI	CAYNNNNRTG	2 cut(s)	219, 542
Sse9I	AATT	4 cut(s)	243, 392, 426, 472
SsiI	CCGC	1 cut(s)	329
SspMI	CTAG	3 cut(s)	197, 531, 581
StyD4I	CCNGG	1 cut(s)	367
StyI	CCWWGG	1 cut(s)	181
TaiI	ACGT	1 cut(s)	234
TasI	AATT	4 cut(s)	243, 392, 426, 472
TatI	WGTACW	1 cut(s)	211
TfiI	GAWTC	1 cut(s)	54
Tru1I	TTAA	2 cut(s)	249, 452
Tru9I	TTAA	2 cut(s)	249, 452
TscAI	CASTG	2 cut(s)	91, 447
TseI	GCWGC	2 cut(s)	116, 527
TspDTI	ATGAA	5 cut(s)	39, 56, 150, 419, 478
TspRI	CASTG	2 cut(s)	91, 447
VpaK11BI	GGWCC	1 cut(s)	142
XapI	RAATTY	2 cut(s)	392, 426
XspI	CTAG	3 cut(s)	197, 531, 581

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.