Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0001203

Physical Location & Seq

Genomic Coordinates Reverse (-)

3811960 .. 3814450

Gene Structure 2491 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1056800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGGAAGAGAGCAAACGCAGCCAGTTCAGGAGGATTTGTGTGTTCTGTGGAAGCAACTCTGGCCGCAGGAAAGTGTTTAGTGACGCTGCTCTGGAGTTGGGCAATGAACTGGTGAAAAGGAAGATAGATTTGGTGTATGGCGGGGGAAGTGTCGGGTTGATGGGTTTGATATCGCAGACGGTGTATGATGGAGGTTGCCATGTTCTTGGGGTCATTCCGAAAGCTCTCATGCCGCTTGAGATATCTGGTCCATCCGTTGGAGAAGTAAGAACAGTTACAGACATGCATGAACGCAAAGCTTTGATGGCTCAAGAGGCTGATGCCTTCATTGCTCTTCCTGGAGGATACGGAACTATGGAAGAGCTGTTGGAGATAATAACATGGGCGCAACTTGGGATTCATAGGAAGCCGGTTGGTTTGCTTAATGTAGATGGGTACTATAATGCCTTGCTTGCGCTATTTGACAATGGTGTCGAAGAAGGATTCATCAAGCCAGGTGCTCGGCATATAGTTCTCTCTGCTCCAACAGCCAAAGAACTTGTTGAGAAGATGGAGCAATACACTCCTTCCCATGAACATATTGCTTCTCATGAAAGCTGGCAAATGAAACAACTTGGTAAACGCGGAGCCATGAAAGCGCAAGGTGCAACTGTTATTGACGATAATTCTTTCACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lysine_decarbox

Protein Analysis

226

Amino Acids

24.56

Weight (kDa)

6.17

Isoelectric Point (pI)

41.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LDcluster4	PF18306	17 - 123	5.6e-12	SLOG cluster4 family
Lysine_decarbox	PF03641	54 - 184	1.4e-46	Possible lysine decarboxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001203)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11950 AT5G11950 AT5G11950 AT5G11950 AT5G26140 AT5G26140 AT5G26140
fragaria_vesca	FvH4_2g31610 FvH4_2g31610 FvH4_2g31610 FvH4_2g38680 FvH4_2g38680 FvH4_3g04550 FvH4_3g04550 FvH4_3g04550
malus_domestica	MD03G1005300.v1.1 MD08G1014400.v1.1 MD08G1064800.v1.1 MD11G1007900.v1.1 MD15G1013800.v1.1 MD15G1056800.v1.1
prunus_persica	Prupe.1G367500_v2.0.a1 Prupe.1G409400_v2.0.a1 Prupe.1G409400_v2.0.a1 Prupe.1G409400_v2.0.a1 Prupe.1G409400_v2.0.a1 Prupe.1G409400_v2.0.a1 Prupe.1G409400_v2.0.a1 Prupe.1G409400_v2.0.a1 Prupe.6G005100_v2.0.a1 Prupe.6G005100_v2.0.a1
pyrus_communis	pycom03g00550 pycom08g01300 pycom08g05310 pycom11g00540 pycom15g01200 pycom15g05320
rosa_chinensis	RchiOBHm_Chr6g0302631 RchiOBHm_Chr6g0311211
rosa_laevigata	RLG00000010427 RLG00000011154
rosa_multiflora	Rmu_co8501517.1_g000001 Rmu_sc0005455.1_g000005
rosa_roxburghii	Rroxscaffold_7G00157900 Rroxscaffold_7G00165490
rosa_rugosa	Rorug06G0315600 Rorug06G0386400 Rorug06G0386500
rosa_samantha	Rh6AG428900 Rh6BG473600 Rh6BG511200 Rh6CG441200 Rh6CG517000 Rh6DG503500
rosa_wichuraiana	Rw6G037120 Rw6G043590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	470
AccB7I	CCANNNNNTGG	1 cut(s)	257
AccII	CGCG	1 cut(s)	624
AciI	CCGC	4 cut(s)	64, 141, 233, 624
AcoI	YGGCCR	1 cut(s)	61
AfaI	GTAC	1 cut(s)	437
AfiI	CCNNNNNNNGG	1 cut(s)	257
AjnI	CCWGG	2 cut(s)	337, 493
AjuI	GAANNNNNNNTTGG	2 cut(s)	113, 145
AluBI	AGCT	4 cut(s)	224, 299, 364, 597
AluI	AGCT	4 cut(s)	224, 299, 364, 597
Alw21I	GWGCWC	1 cut(s)	502
AoxI	GGCC	1 cut(s)	61
ApeKI	GCWGC	2 cut(s)	18, 86
AspLEI	GCGC	3 cut(s)	388, 457, 640
AspS9I	GGNCC	1 cut(s)	248
AsuHPI	GGTGA	2 cut(s)	124, 664
AvaII	GGWCC	1 cut(s)	248
Bbv12I	GWGCWC	1 cut(s)	502
BbvI	GCAGC	2 cut(s)	30, 73
BccI	CCATC	6 cut(s)	154, 182, 259, 298, 425, 544
BciT130I	CCWGG	2 cut(s)	339, 495
BciVI	GTATCC	1 cut(s)	338
BfaI	CTAG	1 cut(s)	676
BfuI	GTATCC	1 cut(s)	338
BisI	GCNGC	4 cut(s)	19, 64, 87, 233
BlsI	GCNGC	4 cut(s)	20, 65, 88, 234
Bme1390I	CCNGG	2 cut(s)	339, 495
Bme18I	GGWCC	1 cut(s)	248
BmgT120I	GGNCC	1 cut(s)	248
BmiI	GGNNCC	1 cut(s)	628
BmrFI	CCNGG	2 cut(s)	339, 495
BmsI	GCATC	1 cut(s)	310
BpmI	CTGGAG	2 cut(s)	113, 360
BpuEI	CTTGAG	2 cut(s)	257, 294
BsaXI	ACNNNNNCTCC	2 cut(s)	22, 52
Bsc4I	CCNNNNNNNGG	1 cut(s)	257
Bse118I	RCCGGY	1 cut(s)	409
Bse1I	ACTGG	2 cut(s)	22, 114
Bse3DI	GCAATG	2 cut(s)	109, 327
BseBI	CCWGG	2 cut(s)	339, 495
BseGI	GGATG	1 cut(s)	251
BseLI	CCNNNNNNNGG	1 cut(s)	257
BseMI	GCAATG	2 cut(s)	109, 327
BseNI	ACTGG	2 cut(s)	22, 114
BseXI	GCAGC	2 cut(s)	30, 73
Bsh1236I	CGCG	1 cut(s)	624
BshFI	GGCC	1 cut(s)	63
BsiHKAI	GWGCWC	1 cut(s)	502
BsiSI	CCGG	1 cut(s)	410
BslI	CCNNNNNNNGG	1 cut(s)	257
BsnI	GGCC	1 cut(s)	63
Bsp1286I	GDGCHC	1 cut(s)	502
BspACI	CCGC	4 cut(s)	64, 141, 233, 624
BspANI	GGCC	1 cut(s)	63
BspFNI	CGCG	1 cut(s)	624
BspHI	TCATGA	1 cut(s)	589
BspLI	GGNNCC	1 cut(s)	628
BspQI	GCTCTTC	2 cut(s)	339, 354
BsrDI	GCAATG	2 cut(s)	109, 327
BsrFI	RCCGGY	1 cut(s)	409
BsrI	ACTGG	2 cut(s)	22, 114
BssAI	RCCGGY	1 cut(s)	409
Bst2UI	CCWGG	2 cut(s)	339, 495
Bst4CI	ACNGT	3 cut(s)	181, 274, 652
Bst6I	CTCTTC	2 cut(s)	339, 354
BstC8I	GCNNGC	2 cut(s)	453, 599
BstF5I	GGATG	1 cut(s)	251
BstFNI	CGCG	1 cut(s)	624
BstHHI	GCGC	3 cut(s)	388, 457, 640
BstMWI	GCNNNNNNNGC	9 cut(s)	18, 60, 305, 314, 329, 452, 527, 635, 644
BstNI	CCWGG	2 cut(s)	339, 495
BstNSI	RCATGY	1 cut(s)	286
BstSCI	CCNGG	2 cut(s)	337, 493
BstUI	CGCG	1 cut(s)	624
BstV1I	GCAGC	2 cut(s)	30, 73
BstXI	CCANNNNNNTGG	1 cut(s)	206
BsuI	GTATCC	1 cut(s)	338
BsuRI	GGCC	1 cut(s)	63
BtsCI	GGATG	1 cut(s)	251
Cac8I	GCNNGC	2 cut(s)	453, 599
CciI	TCATGA	1 cut(s)	589
CfoI	GCGC	3 cut(s)	388, 457, 640
Cfr10I	RCCGGY	1 cut(s)	409
Cfr13I	GGNCC	1 cut(s)	248
CseI	GACGC	1 cut(s)	92
Csp6I	GTAC	1 cut(s)	436
CviAII	CATG	8 cut(s)	200, 229, 283, 287, 381, 572, 590, 631
CviQI	GTAC	1 cut(s)	436
DrdI	GACNNNNNNGTC	1 cut(s)	470
DseDI	GACNNNNNNGTC	1 cut(s)	470
EaeI	YGGCCR	1 cut(s)	61
Eam1104I	CTCTTC	2 cut(s)	339, 354
EarI	CTCTTC	2 cut(s)	339, 354
Eco32I	GATATC	2 cut(s)	171, 243
Eco47I	GGWCC	1 cut(s)	248
EcoRII	CCWGG	2 cut(s)	337, 493
EcoRV	GATATC	2 cut(s)	171, 243
EcoT22I	ATGCAT	1 cut(s)	288
FaeI	CATG	8 cut(s)	203, 232, 286, 290, 384, 575, 593, 634
FatI	CATG	8 cut(s)	199, 228, 282, 286, 380, 571, 589, 630
FauI	CCCGC	1 cut(s)	134
Fnu4HI	GCNGC	4 cut(s)	19, 64, 87, 233
FokI	GGATG	1 cut(s)	238
Fsp4HI	GCNGC	4 cut(s)	19, 64, 87, 233
FspBI	CTAG	1 cut(s)	676
GlaI	GCGC	3 cut(s)	387, 456, 639
GluI	GCNGC	4 cut(s)	19, 64, 87, 233
GsuI	CTGGAG	2 cut(s)	113, 360
HaeIII	GGCC	1 cut(s)	63
HapII	CCGG	1 cut(s)	410
HgaI	GACGC	1 cut(s)	92
HhaI	GCGC	3 cut(s)	388, 457, 640
Hin1II	CATG	8 cut(s)	203, 232, 286, 290, 384, 575, 593, 634
Hin6I	GCGC	3 cut(s)	386, 455, 638
HinP1I	GCGC	3 cut(s)	386, 455, 638
HindIII	AAGCTT	1 cut(s)	297
HinfI	GANTC	2 cut(s)	397, 483
HpaII	CCGG	1 cut(s)	410
HphI	GGTGA	2 cut(s)	124, 664
Hpy166II	GTNNAC	1 cut(s)	620
Hpy188I	TCNGA	1 cut(s)	219
Hpy188III	TCNNGA	4 cut(s)	28, 92, 311, 590
Hpy8I	GTNNAC	1 cut(s)	620
HpyAV	CCTTC	3 cut(s)	334, 473, 576
HpyCH4III	ACNGT	3 cut(s)	181, 274, 652
HpyCH4V	TGCA	2 cut(s)	286, 647
HpyF10VI	GCNNNNNNNGC	9 cut(s)	18, 60, 305, 314, 329, 452, 527, 635, 644
Hsp92II	CATG	8 cut(s)	203, 232, 286, 290, 384, 575, 593, 634
HspAI	GCGC	3 cut(s)	386, 455, 638
LguI	GCTCTTC	2 cut(s)	339, 354
LmnI	GCTCC	3 cut(s)	526, 553, 626
Lsp1109I	GCAGC	2 cut(s)	30, 73
LweI	GCATC	1 cut(s)	310
MaeI	CTAG	1 cut(s)	676
MaeIII	GTNAC	2 cut(s)	80, 274
MboII	GAAGA	6 cut(s)	17, 133, 326, 371, 488, 559
MhlI	GDGCHC	1 cut(s)	502
MluCI	AATT	1 cut(s)	664
MmeI	TCCRAC	3 cut(s)	238, 348, 548
MnlI	CCTC	4 cut(s)	24, 185, 307, 335
Mph1103I	ATGCAT	1 cut(s)	288
MseI	TTAA	1 cut(s)	423
MspI	CCGG	1 cut(s)	410
MspR9I	CCNGG	2 cut(s)	339, 495
MvaI	CCWGG	2 cut(s)	339, 495
MvnI	CGCG	1 cut(s)	624
MwoI	GCNNNNNNNGC	9 cut(s)	18, 60, 305, 314, 329, 452, 527, 635, 644
NlaIII	CATG	8 cut(s)	203, 232, 286, 290, 384, 575, 593, 634
NlaIV	GGNNCC	1 cut(s)	628
NmeAIII	GCCGAG	1 cut(s)	481
NmuCI	GTSAC	1 cut(s)	80
NsiI	ATGCAT	1 cut(s)	288
NspI	RCATGY	1 cut(s)	286
PagI	TCATGA	1 cut(s)	589
PciSI	GCTCTTC	2 cut(s)	339, 354
PfeI	GAWTC	2 cut(s)	397, 483
PflMI	CCANNNNNTGG	1 cut(s)	257
PfoI	TCCNGGA	1 cut(s)	337
PkrI	GCNGC	4 cut(s)	20, 65, 88, 234
Psp6I	CCWGG	2 cut(s)	337, 493
PspGI	CCWGG	2 cut(s)	337, 493
PspN4I	GGNNCC	1 cut(s)	628
PspPI	GGNCC	1 cut(s)	248
RsaI	GTAC	1 cut(s)	437
RsaNI	GTAC	1 cut(s)	436
SapI	GCTCTTC	2 cut(s)	339, 354
SaqAI	TTAA	1 cut(s)	423
SatI	GCNGC	4 cut(s)	19, 64, 87, 233
Sau96I	GGNCC	1 cut(s)	248
ScrFI	CCNGG	2 cut(s)	339, 495
SduI	GDGCHC	1 cut(s)	502
SetI	ASST	8 cut(s)	196, 226, 301, 366, 499, 599, 646, 677
SfaNI	GCATC	1 cut(s)	310
SinI	GGWCC	1 cut(s)	248
SmlI	CTYRAG	2 cut(s)	236, 309
SmoI	CTYRAG	2 cut(s)	236, 309
Sse9I	AATT	1 cut(s)	664
SsiI	CCGC	4 cut(s)	64, 141, 233, 624
SspMI	CTAG	1 cut(s)	676
StyD4I	CCNGG	2 cut(s)	337, 493
TaaI	ACNGT	3 cut(s)	181, 274, 652
TaqI	TCGA	1 cut(s)	474
TasI	AATT	1 cut(s)	664
TauI	GCSGC	2 cut(s)	66, 235
TfiI	GAWTC	2 cut(s)	397, 483
Tru1I	TTAA	1 cut(s)	423
Tru9I	TTAA	1 cut(s)	423
TseFI	GTSAC	1 cut(s)	80
TseI	GCWGC	2 cut(s)	18, 86
Tsp45I	GTSAC	1 cut(s)	80
TspDTI	ATGAA	9 cut(s)	120, 303, 316, 389, 475, 588, 606, 620, 647
TspGWI	ACGGA	2 cut(s)	244, 363
Van91I	CCANNNNNTGG	1 cut(s)	257
VpaK11BI	GGWCC	1 cut(s)	248
XceI	RCATGY	1 cut(s)	286
XspI	CTAG	1 cut(s)	676
Zsp2I	ATGCAT	1 cut(s)	288

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.