Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0001203

Physical Location & Seq

Genomic Coordinates Reverse (-)

33632695 .. 33635215

Gene Structure 2521 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G367500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGGAGAATCAACAACAACAGGCTCCAATGAAATCAAGATTCAAGCGTCTCTGTGTTTTCTGCGGTAGCAGTCCTGGGAAGAACCCGAGCTACCAGCTTGCTGCTATCCAACTTGGCAAACAACTGGTTGAAAGAAACATTGACTTGGTTTATGGAGGAGGAAGCATTGGATTGATGGGTCAGGTCTCCCAAGCTGTCTATGATGGTGGTCGCCACGTGTTGGGAGTAATTCCCAGGACTCTCATGCCAAGAGAGATCACAGGAGAGCCTGTGGGAGAAGTAAGAGCTGTATCGGGCATGCACCAACGCAAAGCAGAAATGGCCCGCCAAGCTGATGCATTTATTGCCTTACCAGGTGGTTATGGAACCTTAGAAGAACTATTGGAAGTCATCACTTGGGCTCAGTTGGGAATTCATGATAAACCAGTGGGGCTGTTGAACGTGGATGGCTACTACAATTCACTGCTATCGTTCATAGACAAGGCTGTGGATGAAGGTTTCATTGACCCTGCTGCCCGTCACATTATTGTCTCTGCCCAAACTGCCCAGGAACTCATGTGCAAGCTAGAGGAATATATTCCTAAGCATTCTGGGCTAAGTTGGGAGATGGAGCAACAACTGGAATTCACTGCAAAGTCAGACATTGCTCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lysine_decarbox

Protein Analysis

218

Amino Acids

23.87

Weight (kDa)

5.76

Isoelectric Point (pI)

35.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001203)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11950 AT5G11950 AT5G11950 AT5G11950 AT5G26140 AT5G26140 AT5G26140
fragaria_vesca	FvH4_2g31610 FvH4_2g31610 FvH4_2g31610 FvH4_2g38680 FvH4_2g38680 FvH4_3g04550 FvH4_3g04550 FvH4_3g04550
malus_domestica	MD03G1005300.v1.1 MD08G1014400.v1.1 MD08G1064800.v1.1 MD11G1007900.v1.1 MD15G1013800.v1.1 MD15G1056800.v1.1
prunus_persica	Prupe.1G367500_v2.0.a1 Prupe.1G409400_v2.0.a1 Prupe.1G409400_v2.0.a1 Prupe.1G409400_v2.0.a1 Prupe.1G409400_v2.0.a1 Prupe.1G409400_v2.0.a1 Prupe.1G409400_v2.0.a1 Prupe.1G409400_v2.0.a1 Prupe.6G005100_v2.0.a1 Prupe.6G005100_v2.0.a1
pyrus_communis	pycom03g00550 pycom08g01300 pycom08g05310 pycom11g00540 pycom15g01200 pycom15g05320
rosa_chinensis	RchiOBHm_Chr6g0302631 RchiOBHm_Chr6g0311211
rosa_laevigata	RLG00000010427 RLG00000011154
rosa_multiflora	Rmu_co8501517.1_g000001 Rmu_sc0005455.1_g000005
rosa_roxburghii	Rroxscaffold_7G00157900 Rroxscaffold_7G00165490
rosa_rugosa	Rorug06G0315600 Rorug06G0386400 Rorug06G0386500
rosa_samantha	Rh6AG428900 Rh6BG473600 Rh6BG511200 Rh6CG441200 Rh6CG517000 Rh6DG503500
rosa_wichuraiana	Rw6G037120 Rw6G043590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	220
AciI	CCGC	2 cut(s)	63, 325
AcsI	RAATTY	2 cut(s)	411, 623
AcvI	CACGTG	1 cut(s)	217
AfiI	CCNNNNNNNGG	1 cut(s)	220
AflIII	ACRYGT	1 cut(s)	216
AgsI	TTSAA	3 cut(s)	43, 131, 439
AjnI	CCWGG	4 cut(s)	73, 233, 352, 546
AluBI	AGCT	6 cut(s)	90, 97, 194, 287, 332, 565
AluI	AGCT	6 cut(s)	90, 97, 194, 287, 332, 565
Alw26I	GTCTC	3 cut(s)	53, 190, 535
Ama87I	CYCGRG	1 cut(s)	85
AoxI	GGCC	1 cut(s)	321
ApeKI	GCWGC	2 cut(s)	101, 512
ApoI	RAATTY	2 cut(s)	411, 623
Asp700I	GAANNNNTTC	1 cut(s)	576
AspS9I	GGNCC	1 cut(s)	322
AvaI	CYCGRG	1 cut(s)	85
BanII	GRGCYC	1 cut(s)	403
BbrPI	CACGTG	1 cut(s)	217
BbvI	GCAGC	2 cut(s)	88, 499
BccI	CCATC	4 cut(s)	169, 197, 440, 601
BciT130I	CCWGG	4 cut(s)	75, 235, 354, 548
BcoDI	GTCTC	3 cut(s)	53, 190, 535
BfaI	CTAG	1 cut(s)	566
BisI	GCNGC	2 cut(s)	102, 513
BlsI	GCNGC	2 cut(s)	103, 514
Bme1390I	CCNGG	4 cut(s)	75, 235, 354, 548
BmeT110I	CYCGRG	1 cut(s)	85
BmgT120I	GGNCC	1 cut(s)	322
BmiI	GGNNCC	2 cut(s)	24, 367
BmrFI	CCNGG	4 cut(s)	75, 235, 354, 548
BmsI	GCATC	1 cut(s)	325
Bpu10I	CCTNAGC	1 cut(s)	582
BsaAI	YACGTR	1 cut(s)	217
BsaI	GGTCTC	1 cut(s)	190
BsaJI	CCNNGG	3 cut(s)	74, 233, 546
BsaXI	ACNNNNNCTCC	2 cut(s)	255, 285
Bsc4I	CCNNNNNNNGG	1 cut(s)	220
Bse1I	ACTGG	3 cut(s)	129, 425, 624
Bse3DI	GCAATG	1 cut(s)	642
BseBI	CCWGG	4 cut(s)	75, 235, 354, 548
BseDI	CCNNGG	3 cut(s)	74, 233, 546
BseGI	GGATG	2 cut(s)	451, 496
BseLI	CCNNNNNNNGG	1 cut(s)	220
BseMI	GCAATG	1 cut(s)	642
BseMII	CTCAG	1 cut(s)	416
BseNI	ACTGG	3 cut(s)	129, 425, 624
BseRI	GAGGAG	1 cut(s)	171
BseXI	GCAGC	2 cut(s)	88, 499
BshFI	GGCC	1 cut(s)	323
BsiHKCI	CYCGRG	1 cut(s)	85
BslI	CCNNNNNNNGG	1 cut(s)	220
BsmAI	GTCTC	3 cut(s)	53, 190, 535
BsmBI	CGTCTC	1 cut(s)	53
BsmI	GAATGC	1 cut(s)	586
BsnI	GGCC	1 cut(s)	323
Bso31I	GGTCTC	1 cut(s)	190
BsoBI	CYCGRG	1 cut(s)	85
Bsp1286I	GDGCHC	1 cut(s)	403
Bsp143I	GATC	1 cut(s)	255
BspACI	CCGC	2 cut(s)	63, 325
BspANI	GGCC	1 cut(s)	323
BspCNI	CTCAG	1 cut(s)	415
BspHI	TCATGA	1 cut(s)	415
BspLI	GGNNCC	2 cut(s)	24, 367
BspTNI	GGTCTC	1 cut(s)	190
BsrDI	GCAATG	1 cut(s)	642
BsrI	ACTGG	3 cut(s)	129, 425, 624
BssECI	CCNNGG	3 cut(s)	74, 233, 546
BssMI	GATC	1 cut(s)	255
Bst2UI	CCWGG	4 cut(s)	75, 235, 354, 548
BstAPI	GCANNNNNTGC	1 cut(s)	344
BstBAI	YACGTR	1 cut(s)	217
BstC8I	GCNNGC	4 cut(s)	99, 299, 325, 563
BstDEI	CTNAG	4 cut(s)	370, 402, 582, 596
BstF5I	GGATG	2 cut(s)	451, 496
BstKTI	GATC	1 cut(s)	258
BstMAI	GTCTC	3 cut(s)	53, 190, 535
BstMBI	GATC	1 cut(s)	255
BstMWI	GCNNNNNNNGC	5 cut(s)	320, 329, 344, 542, 592
BstNI	CCWGG	4 cut(s)	75, 235, 354, 548
BstNSI	RCATGY	1 cut(s)	301
BstSCI	CCNGG	4 cut(s)	73, 233, 352, 546
BstV1I	GCAGC	2 cut(s)	88, 499
BsuRI	GGCC	1 cut(s)	323
BtsCI	GGATG	2 cut(s)	451, 496
BtsI	GCAGTG	2 cut(s)	461, 627
BtsIMutI	CAGTG	3 cut(s)	432, 461, 627
Cac8I	GCNNGC	4 cut(s)	99, 299, 325, 563
CciI	TCATGA	1 cut(s)	415
Cfr13I	GGNCC	1 cut(s)	322
CseI	GACGC	1 cut(s)	35
CsiI	ACCWGGT	1 cut(s)	352
CviAII	CATG	4 cut(s)	244, 298, 416, 556
DdeI	CTNAG	4 cut(s)	370, 402, 582, 596
DpnI	GATC	1 cut(s)	257
DpnII	GATC	1 cut(s)	255
Eco24I	GRGCYC	1 cut(s)	403
Eco31I	GGTCTC	1 cut(s)	190
Eco72I	CACGTG	1 cut(s)	217
Eco88I	CYCGRG	1 cut(s)	85
EcoRI	GAATTC	2 cut(s)	411, 623
EcoRII	CCWGG	4 cut(s)	73, 233, 352, 546
EcoT22I	ATGCAT	1 cut(s)	340
EcoT38I	GRGCYC	1 cut(s)	403
Esp3I	CGTCTC	1 cut(s)	53
FaeI	CATG	4 cut(s)	247, 301, 419, 559
FaiI	YATR	9 cut(s)	153, 201, 245, 299, 363, 417, 476, 557, 576
FatI	CATG	4 cut(s)	243, 297, 415, 555
FauI	CCCGC	1 cut(s)	332
Fnu4HI	GCNGC	2 cut(s)	102, 513
FokI	GGATG	2 cut(s)	458, 503
FriOI	GRGCYC	1 cut(s)	403
Fsp4HI	GCNGC	2 cut(s)	102, 513
FspBI	CTAG	1 cut(s)	566
GluI	GCNGC	2 cut(s)	102, 513
HaeIII	GGCC	1 cut(s)	323
HgaI	GACGC	1 cut(s)	35
Hin1II	CATG	4 cut(s)	247, 301, 419, 559
HinfI	GANTC	3 cut(s)	7, 39, 238
Hpy188I	TCNGA	1 cut(s)	640
Hpy188III	TCNNGA	2 cut(s)	36, 416
HpyAV	CCTTC	1 cut(s)	488
HpyCH4IV	ACGT	2 cut(s)	216, 441
HpyCH4V	TGCA	4 cut(s)	301, 338, 561, 632
HpyF10VI	GCNNNNNNNGC	5 cut(s)	320, 329, 344, 542, 592
HpyF3I	CTNAG	4 cut(s)	370, 402, 582, 596
HpySE526I	ACGT	2 cut(s)	216, 441
Hsp92II	CATG	4 cut(s)	247, 301, 419, 559
Kzo9I	GATC	1 cut(s)	255
LmnI	GCTCC	2 cut(s)	28, 610
Lsp1109I	GCAGC	2 cut(s)	88, 499
LweI	GCATC	1 cut(s)	325
MabI	ACCWGGT	1 cut(s)	352
MaeI	CTAG	1 cut(s)	566
MaeII	ACGT	2 cut(s)	216, 441
MaeIII	GTNAC	1 cut(s)	518
MalI	GATC	1 cut(s)	257
MboI	GATC	1 cut(s)	255
MboII	GAAGA	2 cut(s)	91, 386
MhlI	GDGCHC	1 cut(s)	403
MluCI	AATT	4 cut(s)	228, 411, 457, 623
MlyI	GAGTC	1 cut(s)	232
MmeI	TCCRAC	1 cut(s)	133
MnlI	CCTC	3 cut(s)	149, 152, 562
Mph1103I	ATGCAT	1 cut(s)	340
MroXI	GAANNNNTTC	1 cut(s)	576
MspR9I	CCNGG	4 cut(s)	75, 235, 354, 548
Mva1269I	GAATGC	1 cut(s)	586
MvaI	CCWGG	4 cut(s)	75, 235, 354, 548
MwoI	GCNNNNNNNGC	5 cut(s)	320, 329, 344, 542, 592
NdeII	GATC	1 cut(s)	255
NlaIII	CATG	4 cut(s)	247, 301, 419, 559
NlaIV	GGNNCC	2 cut(s)	24, 367
NmuCI	GTSAC	1 cut(s)	518
NsiI	ATGCAT	1 cut(s)	340
NspI	RCATGY	1 cut(s)	301
PaeI	GCATGC	1 cut(s)	301
PagI	TCATGA	1 cut(s)	415
PctI	GAATGC	1 cut(s)	586
PdmI	GAANNNNTTC	1 cut(s)	576
PfeI	GAWTC	2 cut(s)	7, 39
PflMI	CCANNNNNTGG	1 cut(s)	220
PkrI	GCNGC	2 cut(s)	103, 514
PleI	GAGTC	1 cut(s)	232
PmaCI	CACGTG	1 cut(s)	217
PmlI	CACGTG	1 cut(s)	217
PpsI	GAGTC	1 cut(s)	232
Ppu21I	YACGTR	1 cut(s)	217
Psp6I	CCWGG	4 cut(s)	73, 233, 352, 546
PspCI	CACGTG	1 cut(s)	217
PspGI	CCWGG	4 cut(s)	73, 233, 352, 546
PspN4I	GGNNCC	2 cut(s)	24, 367
PspPI	GGNCC	1 cut(s)	322
PsrI	GAACNNNNNNTAC	2 cut(s)	74, 106
SatI	GCNGC	2 cut(s)	102, 513
Sau3AI	GATC	1 cut(s)	255
Sau96I	GGNCC	1 cut(s)	322
SchI	GAGTC	1 cut(s)	232
ScrFI	CCNGG	4 cut(s)	75, 235, 354, 548
SduI	GDGCHC	1 cut(s)	403
SexAI	ACCWGGT	1 cut(s)	352
SfaNI	GCATC	1 cut(s)	325
SphI	GCATGC	1 cut(s)	301
Sse9I	AATT	4 cut(s)	228, 411, 457, 623
SsiI	CCGC	2 cut(s)	63, 325
SspMI	CTAG	1 cut(s)	566
StyD4I	CCNGG	4 cut(s)	73, 233, 352, 546
TaiI	ACGT	2 cut(s)	219, 444
TasI	AATT	4 cut(s)	228, 411, 457, 623
TfiI	GAWTC	2 cut(s)	7, 39
TscAI	CASTG	3 cut(s)	432, 468, 634
TseFI	GTSAC	1 cut(s)	518
TseI	GCWGC	2 cut(s)	101, 512
Tsp45I	GTSAC	1 cut(s)	518
TspDTI	ATGAA	5 cut(s)	44, 404, 463, 490, 507
TspRI	CASTG	3 cut(s)	432, 468, 634
Van91I	CCANNNNNTGG	1 cut(s)	220
XapI	RAATTY	2 cut(s)	411, 623
XceI	RCATGY	1 cut(s)	301
XmnI	GAANNNNTTC	1 cut(s)	576
XspI	CTAG	1 cut(s)	566
Zsp2I	ATGCAT	1 cut(s)	340

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.