Rmu_co8501517.1_g000001

Possible lysine decarboxylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8501517.1
OG0001203
Physical Location & Seq
Forward (+)
794 .. 2463
1670 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8501517.1_g000001.1.cds

Sequence Viewer

Length: 555 bp
atggaagagggtagcaagttcaagaggatttgtgtgttttgtggtagcaactctggccacagacaagtcttcagtgatgctgctcttgagttgggcaatgaactggtgaaacggaagatagatttggtgtatggtggagggaatgtcgggttgatgggtttggtatcccagactgtatttgatggaggttgccatgttcttggagtcattccaaaagctctcatgcctagagagatatccggtgaaactgttggagaagtaagaatagttagagacatgcatgagcggaaggcttctatggctgaggaatctgatgcctttattgctcttcctggaggatatggaacgatggaagagacattggagatgataacatgggcccaacttgggattcataaaaagccggttggtttgctgaatgtagatgggtactataactccttgctttcactatttgacaatggtgttcaagaaggattcatcaagccaggtgctcgggatataattgtctctgctccaaacgctaaagaacttatggttcagatggaggtatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lysine_decarbox

Protein Analysis

184

Amino Acids

19.98

Weight (kDa)

5.26

Isoelectric Point (pI)

26.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 286
AciI CCGC 1 cut(s) 286
AcoI YGGCCR 1 cut(s) 55
AcuI CTGAAG 1 cut(s) 55
AfaI GTAC 1 cut(s) 431
AfiI CCNNNNNNNGG 1 cut(s) 387
AgsI TTSAA 2 cut(s) 22, 470
AjnI CCWGG 2 cut(s) 331, 487
AjuI GAANNNNNNNTTGG 4 cut(s) 107, 139, 375, 407
AluBI AGCT 1 cut(s) 218
AluI AGCT 1 cut(s) 218
Alw21I GWGCWC 1 cut(s) 496
Alw26I GTCTC 3 cut(s) 267, 350, 514
Ama87I CYCGRG 1 cut(s) 495
AoxI GGCC 2 cut(s) 55, 378
ApaI GGGCCC 1 cut(s) 382
ApeKI GCWGC 1 cut(s) 80
AspS9I GGNCC 2 cut(s) 378, 379
AsuHPI GGTGA 2 cut(s) 118, 254
AvaI CYCGRG 1 cut(s) 495
BaeGI GKGCMC 1 cut(s) 382
BalI TGGCCA 1 cut(s) 57
BanII GRGCYC 1 cut(s) 382
BbsI GAAGAC 1 cut(s) 61
Bbv12I GWGCWC 1 cut(s) 496
BbvCI CCTCAGC 1 cut(s) 303
BbvI GCAGC 1 cut(s) 67
BccI CCATC 5 cut(s) 148, 176, 343, 419, 538
BciT130I CCWGG 2 cut(s) 333, 489
BciVI GTATCC 1 cut(s) 175
BcoDI GTCTC 3 cut(s) 267, 350, 514
BfaI CTAG 1 cut(s) 228
BfuI GTATCC 1 cut(s) 175
BisI GCNGC 1 cut(s) 81
BlsI GCNGC 1 cut(s) 82
Bme1390I CCNGG 2 cut(s) 333, 489
BmeT110I CYCGRG 1 cut(s) 495
BmgT120I GGNCC 2 cut(s) 378, 379
BmiI GGNNCC 1 cut(s) 380
BmrFI CCNGG 2 cut(s) 333, 489
BmsI GCATC 2 cut(s) 67, 304
BpiI GAAGAC 1 cut(s) 61
BpmI CTGGAG 1 cut(s) 354
Bpu10I CCTNAGC 1 cut(s) 303
BpuEI CTTGAG 1 cut(s) 107
BsaWI WCCGGW 1 cut(s) 239
BsaXI ACNNNNNCTCC 4 cut(s) 129, 159, 422, 452
Bsc4I CCNNNNNNNGG 1 cut(s) 387
Bse118I RCCGGY 1 cut(s) 403
Bse1I ACTGG 1 cut(s) 108
Bse3DI GCAATG 1 cut(s) 103
BseBI CCWGG 2 cut(s) 333, 489
BseLI CCNNNNNNNGG 1 cut(s) 387
BseMI GCAATG 1 cut(s) 103
BseMII CTCAG 1 cut(s) 294
BseNI ACTGG 1 cut(s) 108
BseSI GKGCMC 1 cut(s) 382
BseXI GCAGC 1 cut(s) 67
BshFI GGCC 2 cut(s) 57, 380
BsiHKAI GWGCWC 1 cut(s) 496
BsiHKCI CYCGRG 1 cut(s) 495
BsiSI CCGG 2 cut(s) 240, 404
BslI CCNNNNNNNGG 1 cut(s) 387
BsmAI GTCTC 3 cut(s) 267, 350, 514
BsnI GGCC 2 cut(s) 57, 380
BsoBI CYCGRG 1 cut(s) 495
Bsp120I GGGCCC 1 cut(s) 378
Bsp1286I GDGCHC 2 cut(s) 382, 496
BspACI CCGC 1 cut(s) 286
BspANI GGCC 2 cut(s) 57, 380
BspCNI CTCAG 1 cut(s) 295
BspLI GGNNCC 1 cut(s) 380
BspQI GCTCTTC 1 cut(s) 333
BsrBI CCGCTC 1 cut(s) 286
BsrDI GCAATG 1 cut(s) 103
BsrFI RCCGGY 1 cut(s) 403
BsrI ACTGG 1 cut(s) 108
BssAI RCCGGY 1 cut(s) 403
Bst2UI CCWGG 2 cut(s) 333, 489
Bst4CI ACNGT 2 cut(s) 175, 250
Bst6I CTCTTC 2 cut(s) 333, 348
BstDEI CTNAG 1 cut(s) 303
BstMAI GTCTC 3 cut(s) 267, 350, 514
BstMWI GCNNNNNNNGC 4 cut(s) 54, 299, 323, 521
BstNI CCWGG 2 cut(s) 333, 489
BstNSI RCATGY 1 cut(s) 280
BstSCI CCNGG 2 cut(s) 331, 487
BstSLI GKGCMC 1 cut(s) 382
BstV1I GCAGC 1 cut(s) 67
BstV2I GAAGAC 1 cut(s) 61
BstXI CCANNNNNNTGG 1 cut(s) 200
BsuI GTATCC 1 cut(s) 175
BsuRI GGCC 2 cut(s) 57, 380
BtsIMutI CAGTG 1 cut(s) 79
Cfr10I RCCGGY 1 cut(s) 403
Cfr13I GGNCC 2 cut(s) 378, 379
Csp6I GTAC 1 cut(s) 430
CviAII CATG 5 cut(s) 194, 223, 277, 281, 375
CviJI RGCY 7 cut(s) 57, 218, 293, 302, 380, 403, 487
CviKI_1 RGCY 7 cut(s) 57, 218, 293, 302, 380, 403, 487
CviQI GTAC 1 cut(s) 430
DdeI CTNAG 1 cut(s) 303
EaeI YGGCCR 1 cut(s) 55
Eam1104I CTCTTC 2 cut(s) 333, 348
EarI CTCTTC 2 cut(s) 333, 348
Eco24I GRGCYC 1 cut(s) 382
Eco32I GATATC 1 cut(s) 237
Eco57I CTGAAG 1 cut(s) 55
Eco88I CYCGRG 1 cut(s) 495
EcoRII CCWGG 2 cut(s) 331, 487
EcoRV GATATC 1 cut(s) 237
EcoT22I ATGCAT 1 cut(s) 282
EcoT38I GRGCYC 1 cut(s) 382
FaeI CATG 5 cut(s) 197, 226, 280, 284, 378
FatI CATG 5 cut(s) 193, 222, 276, 280, 374
Fnu4HI GCNGC 1 cut(s) 81
FriOI GRGCYC 1 cut(s) 382
Fsp4HI GCNGC 1 cut(s) 81
FspBI CTAG 1 cut(s) 228
GluI GCNGC 1 cut(s) 81
GsuI CTGGAG 1 cut(s) 354
HaeIII GGCC 2 cut(s) 57, 380
HapII CCGG 2 cut(s) 240, 404
Hin1II CATG 5 cut(s) 197, 226, 280, 284, 378
HinfI GANTC 4 cut(s) 204, 308, 391, 477
HpaII CCGG 2 cut(s) 240, 404
HphI GGTGA 2 cut(s) 118, 254
Hpy188I TCNGA 2 cut(s) 313, 543
Hpy188III TCNNGA 4 cut(s) 22, 86, 470, 497
HpyAV CCTTC 2 cut(s) 283, 467
HpyCH4III ACNGT 2 cut(s) 175, 250
HpyCH4V TGCA 1 cut(s) 280
HpyF10VI GCNNNNNNNGC 4 cut(s) 54, 299, 323, 521
HpyF3I CTNAG 1 cut(s) 303
Hsp92II CATG 5 cut(s) 197, 226, 280, 284, 378
LguI GCTCTTC 1 cut(s) 333
LmnI GCTCC 1 cut(s) 520
LpnPI CCDG 9 cut(s) 39, 89, 182, 253, 318, 345, 417, 474, 501
Lsp1109I GCAGC 1 cut(s) 67
LweI GCATC 2 cut(s) 67, 304
MaeI CTAG 1 cut(s) 228
MbiI CCGCTC 1 cut(s) 286
MboII GAAGA 5 cut(s) 17, 61, 127, 320, 365
MhlI GDGCHC 2 cut(s) 382, 496
MlsI TGGCCA 1 cut(s) 57
MluCI AATT 1 cut(s) 504
MluNI TGGCCA 1 cut(s) 57
MlyI GAGTC 1 cut(s) 213
MmeI TCCRAC 1 cut(s) 232
MnlI CCTC 6 cut(s) 18, 131, 179, 298, 329, 541
Mox20I TGGCCA 1 cut(s) 57
Mph1103I ATGCAT 1 cut(s) 282
MscI TGGCCA 1 cut(s) 57
Msp20I TGGCCA 1 cut(s) 57
MspI CCGG 2 cut(s) 240, 404
MspR9I CCNGG 2 cut(s) 333, 489
MvaI CCWGG 2 cut(s) 333, 489
MwoI GCNNNNNNNGC 4 cut(s) 54, 299, 323, 521
NlaIII CATG 5 cut(s) 197, 226, 280, 284, 378
NlaIV GGNNCC 1 cut(s) 380
NsiI ATGCAT 1 cut(s) 282
NspI RCATGY 1 cut(s) 280
PciSI GCTCTTC 1 cut(s) 333
PfeI GAWTC 3 cut(s) 308, 391, 477
PfoI TCCNGGA 1 cut(s) 331
PkrI GCNGC 1 cut(s) 82
PleI GAGTC 1 cut(s) 212
PpsI GAGTC 1 cut(s) 212
Psp6I CCWGG 2 cut(s) 331, 487
PspGI CCWGG 2 cut(s) 331, 487
PspN4I GGNNCC 1 cut(s) 380
PspOMI GGGCCC 1 cut(s) 378
PspPI GGNCC 2 cut(s) 378, 379
RsaI GTAC 1 cut(s) 431
RsaNI GTAC 1 cut(s) 430
SapI GCTCTTC 1 cut(s) 333
SatI GCNGC 1 cut(s) 81
Sau96I GGNCC 2 cut(s) 378, 379
SchI GAGTC 1 cut(s) 213
ScrFI CCNGG 2 cut(s) 333, 489
SduI GDGCHC 2 cut(s) 382, 496
SetI ASST 4 cut(s) 190, 220, 493, 552
SfaNI GCATC 2 cut(s) 67, 304
SmlI CTYRAG 1 cut(s) 86
SmoI CTYRAG 1 cut(s) 86
Sse9I AATT 1 cut(s) 504
SsiI CCGC 1 cut(s) 286
SspMI CTAG 1 cut(s) 228
StyD4I CCNGG 2 cut(s) 331, 487
TaaI ACNGT 2 cut(s) 175, 250
TasI AATT 1 cut(s) 504
TfiI GAWTC 3 cut(s) 308, 391, 477
TscAI CASTG 1 cut(s) 79
TseI GCWGC 1 cut(s) 80
TspDTI ATGAA 3 cut(s) 114, 383, 469
TspGWI ACGGA 1 cut(s) 127
TspRI CASTG 1 cut(s) 79
XceI RCATGY 1 cut(s) 280
XspI CTAG 1 cut(s) 228
Zsp2I ATGCAT 1 cut(s) 282
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.