Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0001203

Physical Location & Seq

Genomic Coordinates Reverse (-)

7193209 .. 7195561

Gene Structure 2353 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00165490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGGAGATGATTCAAGAACAACAACCACAAGAGGGTGTAATGAAATCTTCAAGATTCAAGCGTATCTGTGTTTTCTGTGGTAGCAGTGCTGGAAAGAACCCAAGTTATCAGCTTGCTGCTGTTCAACTTGGAAAACAACTGGTTGAAAGAAATATTGACTTGGTTTATGGAGGAGGGAGCATTGGTTTGATGGGTCAGGTTTCCCAAGCTGTTTATGATGGTGGTCGCCACGTGTTGGGAGTAATTCCCAGAACTCTCATGCCAAGAGAGATCACTGGAGAGCCTGTGGGAGAAGTAAGAGCTGTATCTGGTATGCACCAGCGCAAAGCGGAAATGGCTCGCCAAGCTGATGCCTTTGTTGCCTTGCCAGGTGGCTATGGTACCTTAGAAGAACTCTTGGAAGTGATCACTTGGGCTCAGTTGGGAATTCATGAGAAACCAGTGGGGTTGTTAAATGTTGATGGGTACTACAACTCACTTTTAACCTTCATAGACAATGCTGTGGATGAAGGTTTCATTGACCCTGCAGCTAGGCACATTATTGTGTCTGCCCCAACCGCTCAGGAACTTATGTGCAAACTAGAGGAATATACTCCTAAGCATTCTGCGCTAAGTTGGGAGAAAGAGCAACAACTGGAATACACTGCAAAGTCAGACATTGCTCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lysine_decarbox

Protein Analysis

222

Amino Acids

24.38

Weight (kDa)

5.43

Isoelectric Point (pI)

38.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LDcluster4	PF18306	27 - 152	1.7e-13	SLOG cluster4 family
Lysine_decarbox	PF03641	64 - 193	4e-48	Possible lysine decarboxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001203)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11950 AT5G11950 AT5G11950 AT5G11950 AT5G26140 AT5G26140 AT5G26140
fragaria_vesca	FvH4_2g31610 FvH4_2g31610 FvH4_2g31610 FvH4_2g38680 FvH4_2g38680 FvH4_3g04550 FvH4_3g04550 FvH4_3g04550
malus_domestica	MD03G1005300.v1.1 MD08G1014400.v1.1 MD08G1064800.v1.1 MD11G1007900.v1.1 MD15G1013800.v1.1 MD15G1056800.v1.1
prunus_persica	Prupe.1G367500_v2.0.a1 Prupe.1G409400_v2.0.a1 Prupe.1G409400_v2.0.a1 Prupe.1G409400_v2.0.a1 Prupe.1G409400_v2.0.a1 Prupe.1G409400_v2.0.a1 Prupe.1G409400_v2.0.a1 Prupe.1G409400_v2.0.a1 Prupe.6G005100_v2.0.a1 Prupe.6G005100_v2.0.a1
pyrus_communis	pycom03g00550 pycom08g01300 pycom08g05310 pycom11g00540 pycom15g01200 pycom15g05320
rosa_chinensis	RchiOBHm_Chr6g0302631 RchiOBHm_Chr6g0311211
rosa_laevigata	RLG00000010427 RLG00000011154
rosa_multiflora	Rmu_co8501517.1_g000001 Rmu_sc0005455.1_g000005
rosa_roxburghii	Rroxscaffold_7G00157900 Rroxscaffold_7G00165490
rosa_rugosa	Rorug06G0315600 Rorug06G0386400 Rorug06G0386500
rosa_samantha	Rh6AG428900 Rh6BG473600 Rh6BG511200 Rh6CG441200 Rh6CG517000 Rh6DG503500
rosa_wichuraiana	Rw6G037120 Rw6G043590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	380
AccB1I	GGYRCC	1 cut(s)	380
AccB7I	CCANNNNNTGG	1 cut(s)	235
AccBSI	CCGCTC	1 cut(s)	560
AciI	CCGC	2 cut(s)	329, 558
AcsI	RAATTY	1 cut(s)	426
AcvI	CACGTG	1 cut(s)	232
AfaI	GTAC	2 cut(s)	382, 467
AfiI	CCNNNNNNNGG	2 cut(s)	32, 235
AflIII	ACRYGT	1 cut(s)	231
AgsI	TTSAA	5 cut(s)	14, 51, 58, 125, 146
AjnI	CCWGG	1 cut(s)	367
AluBI	AGCT	5 cut(s)	112, 209, 302, 347, 530
AluI	AGCT	5 cut(s)	112, 209, 302, 347, 530
ApeKI	GCWGC	2 cut(s)	116, 527
ApoI	RAATTY	1 cut(s)	426
Asp718I	GGTACC	1 cut(s)	380
AspLEI	GCGC	2 cut(s)	324, 610
BanI	GGYRCC	1 cut(s)	380
BanII	GRGCYC	1 cut(s)	418
BbrPI	CACGTG	1 cut(s)	232
BbvI	GCAGC	2 cut(s)	103, 539
BccI	CCATC	3 cut(s)	184, 212, 455
BciT130I	CCWGG	1 cut(s)	369
BclI	TGATCA	1 cut(s)	405
BfaI	CTAG	2 cut(s)	531, 581
BfmI	CTRYAG	1 cut(s)	525
BisI	GCNGC	2 cut(s)	117, 528
BlsI	GCNGC	2 cut(s)	118, 529
Bme1390I	CCNGG	1 cut(s)	369
BmiI	GGNNCC	1 cut(s)	382
BmrFI	CCNGG	1 cut(s)	369
BmsI	GCATC	1 cut(s)	340
BpmI	CTGGAG	1 cut(s)	297
Bpu10I	CCTNAGC	2 cut(s)	561, 597
BsaAI	YACGTR	1 cut(s)	232
BsaXI	ACNNNNNCTCC	4 cut(s)	169, 199, 270, 300
Bsc4I	CCNNNNNNNGG	2 cut(s)	32, 235
Bse1I	ACTGG	4 cut(s)	144, 280, 440, 639
Bse3DI	GCAATG	1 cut(s)	657
BseBI	CCWGG	1 cut(s)	369
BseGI	GGATG	1 cut(s)	511
BseLI	CCNNNNNNNGG	2 cut(s)	32, 235
BseMI	GCAATG	1 cut(s)	657
BseMII	CTCAG	2 cut(s)	431, 575
BseNI	ACTGG	4 cut(s)	144, 280, 440, 639
BseRI	GAGGAG	1 cut(s)	186
BseXI	GCAGC	2 cut(s)	103, 539
BshNI	GGYRCC	1 cut(s)	380
BslI	CCNNNNNNNGG	2 cut(s)	32, 235
BsmI	GAATGC	1 cut(s)	601
Bsp1286I	GDGCHC	1 cut(s)	418
Bsp143I	GATC	2 cut(s)	270, 405
BspACI	CCGC	2 cut(s)	329, 558
BspCNI	CTCAG	2 cut(s)	430, 574
BspHI	TCATGA	1 cut(s)	430
BspLI	GGNNCC	1 cut(s)	382
BspMAI	CTGCAG	1 cut(s)	529
BspT107I	GGYRCC	1 cut(s)	380
BsrBI	CCGCTC	1 cut(s)	560
BsrDI	GCAATG	1 cut(s)	657
BsrI	ACTGG	4 cut(s)	144, 280, 440, 639
BssMI	GATC	2 cut(s)	270, 405
Bst2UI	CCWGG	1 cut(s)	369
BstBAI	YACGTR	1 cut(s)	232
BstC8I	GCNNGC	2 cut(s)	114, 340
BstDEI	CTNAG	5 cut(s)	385, 417, 561, 597, 611
BstF5I	GGATG	1 cut(s)	511
BstHHI	GCGC	2 cut(s)	324, 610
BstKTI	GATC	2 cut(s)	273, 408
BstMBI	GATC	2 cut(s)	270, 405
BstMWI	GCNNNNNNNGC	5 cut(s)	335, 344, 359, 557, 607
BstNI	CCWGG	1 cut(s)	369
BstSCI	CCNGG	1 cut(s)	367
BstSFI	CTRYAG	1 cut(s)	525
BstV1I	GCAGC	2 cut(s)	103, 539
BtsCI	GGATG	1 cut(s)	511
BtsI	GCAGTG	2 cut(s)	91, 642
BtsIMutI	CAGTG	4 cut(s)	91, 273, 447, 642
Cac8I	GCNNGC	2 cut(s)	114, 340
CciI	TCATGA	1 cut(s)	430
CfoI	GCGC	2 cut(s)	324, 610
Csp6I	GTAC	2 cut(s)	381, 466
CviAII	CATG	2 cut(s)	259, 431
CviJI	RGCY	9 cut(s)	112, 209, 283, 302, 338, 347, 375, 416, 530
CviKI_1	RGCY	9 cut(s)	112, 209, 283, 302, 338, 347, 375, 416, 530
CviQI	GTAC	2 cut(s)	381, 466
DdeI	CTNAG	5 cut(s)	385, 417, 561, 597, 611
DpnI	GATC	2 cut(s)	272, 407
DpnII	GATC	2 cut(s)	270, 405
Eco24I	GRGCYC	1 cut(s)	418
Eco72I	CACGTG	1 cut(s)	232
EcoRI	GAATTC	1 cut(s)	426
EcoRII	CCWGG	1 cut(s)	367
EcoT38I	GRGCYC	1 cut(s)	418
FaeI	CATG	2 cut(s)	262, 434
FaiI	YATR	9 cut(s)	168, 216, 260, 314, 378, 432, 491, 572, 591
FatI	CATG	2 cut(s)	258, 430
FbaI	TGATCA	1 cut(s)	405
Fnu4HI	GCNGC	2 cut(s)	117, 528
FokI	GGATG	1 cut(s)	518
FriOI	GRGCYC	1 cut(s)	418
Fsp4HI	GCNGC	2 cut(s)	117, 528
FspBI	CTAG	2 cut(s)	531, 581
GlaI	GCGC	2 cut(s)	323, 609
GluI	GCNGC	2 cut(s)	117, 528
GsuI	CTGGAG	1 cut(s)	297
HhaI	GCGC	2 cut(s)	324, 610
Hin1II	CATG	2 cut(s)	262, 434
Hin6I	GCGC	2 cut(s)	322, 608
HinP1I	GCGC	2 cut(s)	322, 608
HinfI	GANTC	2 cut(s)	10, 54
Hpy188I	TCNGA	1 cut(s)	655
Hpy188III	TCNNGA	4 cut(s)	14, 51, 431, 563
HpyAV	CCTTC	2 cut(s)	496, 503
HpyCH4IV	ACGT	1 cut(s)	231
HpyCH4V	TGCA	4 cut(s)	316, 527, 576, 647
HpyF10VI	GCNNNNNNNGC	5 cut(s)	335, 344, 359, 557, 607
HpyF3I	CTNAG	5 cut(s)	385, 417, 561, 597, 611
HpySE526I	ACGT	1 cut(s)	231
Hsp92II	CATG	2 cut(s)	262, 434
HspAI	GCGC	2 cut(s)	322, 608
KpnI	GGTACC	1 cut(s)	384
Ksp22I	TGATCA	1 cut(s)	405
Kzo9I	GATC	2 cut(s)	270, 405
LmnI	GCTCC	1 cut(s)	177
Lsp1109I	GCAGC	2 cut(s)	103, 539
LweI	GCATC	1 cut(s)	340
MaeI	CTAG	2 cut(s)	531, 581
MaeII	ACGT	1 cut(s)	231
MalI	GATC	2 cut(s)	272, 407
MbiI	CCGCTC	1 cut(s)	560
MboI	GATC	2 cut(s)	270, 405
MboII	GAAGA	2 cut(s)	39, 401
MhlI	GDGCHC	1 cut(s)	418
MluCI	AATT	2 cut(s)	243, 426
MnlI	CCTC	4 cut(s)	25, 164, 167, 577
MseI	TTAA	2 cut(s)	452, 482
MslI	CAYNNNNRTG	1 cut(s)	542
MspR9I	CCNGG	1 cut(s)	369
Mva1269I	GAATGC	1 cut(s)	601
MvaI	CCWGG	1 cut(s)	369
MwoI	GCNNNNNNNGC	5 cut(s)	335, 344, 359, 557, 607
NdeII	GATC	2 cut(s)	270, 405
NlaIII	CATG	2 cut(s)	262, 434
NlaIV	GGNNCC	1 cut(s)	382
PagI	TCATGA	1 cut(s)	430
PctI	GAATGC	1 cut(s)	601
PfeI	GAWTC	2 cut(s)	10, 54
PflMI	CCANNNNNTGG	1 cut(s)	235
PkrI	GCNGC	2 cut(s)	118, 529
PmaCI	CACGTG	1 cut(s)	232
PmlI	CACGTG	1 cut(s)	232
Ppu21I	YACGTR	1 cut(s)	232
Psp6I	CCWGG	1 cut(s)	367
PspCI	CACGTG	1 cut(s)	232
PspGI	CCWGG	1 cut(s)	367
PspN4I	GGNNCC	1 cut(s)	382
PstI	CTGCAG	1 cut(s)	529
RsaI	GTAC	2 cut(s)	382, 467
RsaNI	GTAC	2 cut(s)	381, 466
RseI	CAYNNNNRTG	1 cut(s)	542
SaqAI	TTAA	2 cut(s)	452, 482
SatI	GCNGC	2 cut(s)	117, 528
Sau3AI	GATC	2 cut(s)	270, 405
ScrFI	CCNGG	1 cut(s)	369
SduI	GDGCHC	1 cut(s)	418
SfaNI	GCATC	1 cut(s)	340
SfcI	CTRYAG	1 cut(s)	525
SmiMI	CAYNNNNRTG	1 cut(s)	542
Sse9I	AATT	2 cut(s)	243, 426
SsiI	CCGC	2 cut(s)	329, 558
SspI	AATATT	1 cut(s)	154
SspMI	CTAG	2 cut(s)	531, 581
StyD4I	CCNGG	1 cut(s)	367
TaiI	ACGT	1 cut(s)	234
TasI	AATT	2 cut(s)	243, 426
TfiI	GAWTC	2 cut(s)	10, 54
Tru1I	TTAA	2 cut(s)	452, 482
Tru9I	TTAA	2 cut(s)	452, 482
TscAI	CASTG	4 cut(s)	91, 280, 447, 649
TseI	GCWGC	2 cut(s)	116, 527
TspDTI	ATGAA	5 cut(s)	56, 419, 478, 505, 522
TspRI	CASTG	4 cut(s)	91, 280, 447, 649
Van91I	CCANNNNNTGG	1 cut(s)	235
XapI	RAATTY	1 cut(s)	426
XspI	CTAG	2 cut(s)	531, 581

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.