Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0001203

Physical Location & Seq

Genomic Coordinates Forward (+)

65864746 .. 65866662

Gene Structure 1917 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG503500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGGAAGAGAGTAGCAAGTTCAAGAGGATTTGTGTGTTTTGTGGAAGCAACTCTGGCCACAGACAAGTCTTCAGTGATGCTGCTCTTGAGTTGGGCAATGAACTGGTGAAACGGAAGATAGATTTGGTGTATGGTGGAGGGAATGTCGGGTTGATGGGTTTGGTATCCCAGACTGTATTTGATGGAGGTTGCCATGTTCTTGGAGTCATTCCAAAAGCTCTCATGCCTAGAGAGATATCCGGTGAAACTGTTGGAGAAGTAAGAATAGTTAGAGACATGCATGAGCGGAAAGCTTCTATGGCTGAGGAATCTGATGCCTTTATTGCTCTTCCTGGAGGATATGGAACGATGGAAGAGACATTGGAGATGATAACATGGGCCCAACTTGGGATTCACAAAAAGCCGGTTGGTTTGCTGAATGTAGATGGGTACTATAACTCCTTGCTTTCACTATTTGACAATGGTGTTCAAGAAGGATTCATCAAGCCAGGTGCTCGGGATATAATTGTCTCTGCTCCAAACGCTAAAGAACTTATGGTTCAGATGGAGCAATACACTCCTTCCCATCAACATATTGCTTCTCATGAAAGCTGGAAAAGGGCGCAACTTGCTATTTCTCAAGCTTCAAGCCATGAGGACCCAAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lysine_decarbox

Protein Analysis

215

Amino Acids

23.57

Weight (kDa)

5.75

Isoelectric Point (pI)

33.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LDcluster4	PF18306	15 - 121	1.7e-12	SLOG cluster4 family
Lysine_decarbox	PF03641	52 - 182	1.3e-46	Possible lysine decarboxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001203)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11950 AT5G11950 AT5G11950 AT5G11950 AT5G26140 AT5G26140 AT5G26140
fragaria_vesca	FvH4_2g31610 FvH4_2g31610 FvH4_2g31610 FvH4_2g38680 FvH4_2g38680 FvH4_3g04550 FvH4_3g04550 FvH4_3g04550
malus_domestica	MD03G1005300.v1.1 MD08G1014400.v1.1 MD08G1064800.v1.1 MD11G1007900.v1.1 MD15G1013800.v1.1 MD15G1056800.v1.1
prunus_persica	Prupe.1G367500_v2.0.a1 Prupe.1G409400_v2.0.a1 Prupe.1G409400_v2.0.a1 Prupe.1G409400_v2.0.a1 Prupe.1G409400_v2.0.a1 Prupe.1G409400_v2.0.a1 Prupe.1G409400_v2.0.a1 Prupe.1G409400_v2.0.a1 Prupe.6G005100_v2.0.a1 Prupe.6G005100_v2.0.a1
pyrus_communis	pycom03g00550 pycom08g01300 pycom08g05310 pycom11g00540 pycom15g01200 pycom15g05320
rosa_chinensis	RchiOBHm_Chr6g0302631 RchiOBHm_Chr6g0311211
rosa_laevigata	RLG00000010427 RLG00000011154
rosa_multiflora	Rmu_co8501517.1_g000001 Rmu_sc0005455.1_g000005
rosa_roxburghii	Rroxscaffold_7G00157900 Rroxscaffold_7G00165490
rosa_rugosa	Rorug06G0315600 Rorug06G0386400 Rorug06G0386500
rosa_samantha	Rh6AG428900 Rh6BG473600 Rh6BG511200 Rh6CG441200 Rh6CG517000 Rh6DG503500
rosa_wichuraiana	Rw6G037120 Rw6G043590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	286
AciI	CCGC	1 cut(s)	286
AcoI	YGGCCR	1 cut(s)	55
AcuI	CTGAAG	1 cut(s)	55
AfaI	GTAC	1 cut(s)	431
AfiI	CCNNNNNNNGG	1 cut(s)	387
AgsI	TTSAA	3 cut(s)	22, 470, 627
AjnI	CCWGG	2 cut(s)	331, 487
AjuI	GAANNNNNNNTTGG	4 cut(s)	107, 139, 375, 407
AluBI	AGCT	4 cut(s)	218, 293, 591, 623
AluI	AGCT	4 cut(s)	218, 293, 591, 623
Alw21I	GWGCWC	1 cut(s)	496
Alw26I	GTCTC	3 cut(s)	267, 350, 514
Ama87I	CYCGRG	1 cut(s)	495
AoxI	GGCC	2 cut(s)	55, 378
ApaI	GGGCCC	1 cut(s)	382
ApeKI	GCWGC	1 cut(s)	80
AspLEI	GCGC	1 cut(s)	604
AspS9I	GGNCC	3 cut(s)	378, 379, 637
AsuHPI	GGTGA	2 cut(s)	118, 254
AvaI	CYCGRG	1 cut(s)	495
AvaII	GGWCC	1 cut(s)	637
BaeGI	GKGCMC	1 cut(s)	382
BalI	TGGCCA	1 cut(s)	57
BanII	GRGCYC	1 cut(s)	382
BbsI	GAAGAC	1 cut(s)	61
Bbv12I	GWGCWC	1 cut(s)	496
BbvCI	CCTCAGC	1 cut(s)	303
BbvI	GCAGC	1 cut(s)	67
BccI	CCATC	6 cut(s)	148, 176, 343, 419, 538, 573
BciT130I	CCWGG	2 cut(s)	333, 489
BciVI	GTATCC	1 cut(s)	175
BcoDI	GTCTC	3 cut(s)	267, 350, 514
BfaI	CTAG	1 cut(s)	228
BfuI	GTATCC	1 cut(s)	175
BisI	GCNGC	1 cut(s)	81
BlsI	GCNGC	1 cut(s)	82
Bme1390I	CCNGG	2 cut(s)	333, 489
Bme18I	GGWCC	1 cut(s)	637
BmeT110I	CYCGRG	1 cut(s)	495
BmgT120I	GGNCC	3 cut(s)	378, 379, 637
BmiI	GGNNCC	2 cut(s)	380, 639
BmrFI	CCNGG	2 cut(s)	333, 489
BmsI	GCATC	2 cut(s)	67, 304
BpiI	GAAGAC	1 cut(s)	61
BpmI	CTGGAG	1 cut(s)	354
Bpu10I	CCTNAGC	1 cut(s)	303
BpuEI	CTTGAG	2 cut(s)	107, 603
BsaJI	CCNNGG	1 cut(s)	641
BsaWI	WCCGGW	1 cut(s)	239
BsaXI	ACNNNNNCTCC	4 cut(s)	129, 159, 422, 452
Bsc4I	CCNNNNNNNGG	1 cut(s)	387
Bse118I	RCCGGY	1 cut(s)	403
Bse1I	ACTGG	1 cut(s)	108
Bse3DI	GCAATG	1 cut(s)	103
BseBI	CCWGG	2 cut(s)	333, 489
BseDI	CCNNGG	1 cut(s)	641
BseLI	CCNNNNNNNGG	1 cut(s)	387
BseMI	GCAATG	1 cut(s)	103
BseMII	CTCAG	1 cut(s)	294
BseNI	ACTGG	1 cut(s)	108
BseSI	GKGCMC	1 cut(s)	382
BseXI	GCAGC	1 cut(s)	67
BshFI	GGCC	2 cut(s)	57, 380
BsiHKAI	GWGCWC	1 cut(s)	496
BsiHKCI	CYCGRG	1 cut(s)	495
BsiSI	CCGG	2 cut(s)	240, 404
BslI	CCNNNNNNNGG	1 cut(s)	387
BsmAI	GTCTC	3 cut(s)	267, 350, 514
BsnI	GGCC	2 cut(s)	57, 380
BsoBI	CYCGRG	1 cut(s)	495
Bsp120I	GGGCCC	1 cut(s)	378
Bsp1286I	GDGCHC	2 cut(s)	382, 496
BspACI	CCGC	1 cut(s)	286
BspANI	GGCC	2 cut(s)	57, 380
BspCNI	CTCAG	1 cut(s)	295
BspHI	TCATGA	1 cut(s)	583
BspLI	GGNNCC	2 cut(s)	380, 639
BspQI	GCTCTTC	1 cut(s)	333
BsrBI	CCGCTC	1 cut(s)	286
BsrDI	GCAATG	1 cut(s)	103
BsrFI	RCCGGY	1 cut(s)	403
BsrI	ACTGG	1 cut(s)	108
BssAI	RCCGGY	1 cut(s)	403
BssECI	CCNNGG	1 cut(s)	641
BssT1I	CCWWGG	1 cut(s)	641
Bst2UI	CCWGG	2 cut(s)	333, 489
Bst4CI	ACNGT	2 cut(s)	175, 250
Bst6I	CTCTTC	2 cut(s)	333, 348
BstDEI	CTNAG	1 cut(s)	303
BstHHI	GCGC	1 cut(s)	604
BstMAI	GTCTC	3 cut(s)	267, 350, 514
BstMWI	GCNNNNNNNGC	5 cut(s)	54, 299, 323, 521, 608
BstNI	CCWGG	2 cut(s)	333, 489
BstNSI	RCATGY	1 cut(s)	280
BstSCI	CCNGG	2 cut(s)	331, 487
BstSLI	GKGCMC	1 cut(s)	382
BstV1I	GCAGC	1 cut(s)	67
BstV2I	GAAGAC	1 cut(s)	61
BstXI	CCANNNNNNTGG	1 cut(s)	200
BsuI	GTATCC	1 cut(s)	175
BsuRI	GGCC	2 cut(s)	57, 380
BtsIMutI	CAGTG	1 cut(s)	79
CciI	TCATGA	1 cut(s)	583
CfoI	GCGC	1 cut(s)	604
Cfr10I	RCCGGY	1 cut(s)	403
Cfr13I	GGNCC	3 cut(s)	378, 379, 637
Csp6I	GTAC	1 cut(s)	430
CviAII	CATG	7 cut(s)	194, 223, 277, 281, 375, 584, 632
CviQI	GTAC	1 cut(s)	430
DdeI	CTNAG	1 cut(s)	303
EaeI	YGGCCR	1 cut(s)	55
Eam1104I	CTCTTC	2 cut(s)	333, 348
EarI	CTCTTC	2 cut(s)	333, 348
Eco130I	CCWWGG	1 cut(s)	641
Eco24I	GRGCYC	1 cut(s)	382
Eco32I	GATATC	1 cut(s)	237
Eco47I	GGWCC	1 cut(s)	637
Eco57I	CTGAAG	1 cut(s)	55
Eco88I	CYCGRG	1 cut(s)	495
EcoO109I	RGGNCCY	1 cut(s)	637
EcoRII	CCWGG	2 cut(s)	331, 487
EcoRV	GATATC	1 cut(s)	237
EcoT14I	CCWWGG	1 cut(s)	641
EcoT22I	ATGCAT	1 cut(s)	282
EcoT38I	GRGCYC	1 cut(s)	382
ErhI	CCWWGG	1 cut(s)	641
FaeI	CATG	7 cut(s)	197, 226, 280, 284, 378, 587, 635
FatI	CATG	7 cut(s)	193, 222, 276, 280, 374, 583, 631
Fnu4HI	GCNGC	1 cut(s)	81
FriOI	GRGCYC	1 cut(s)	382
Fsp4HI	GCNGC	1 cut(s)	81
FspBI	CTAG	1 cut(s)	228
GlaI	GCGC	1 cut(s)	603
GluI	GCNGC	1 cut(s)	81
GsuI	CTGGAG	1 cut(s)	354
HaeIII	GGCC	2 cut(s)	57, 380
HapII	CCGG	2 cut(s)	240, 404
HhaI	GCGC	1 cut(s)	604
Hin1II	CATG	7 cut(s)	197, 226, 280, 284, 378, 587, 635
Hin6I	GCGC	1 cut(s)	602
HinP1I	GCGC	1 cut(s)	602
HindIII	AAGCTT	2 cut(s)	291, 621
HinfI	GANTC	4 cut(s)	204, 308, 391, 477
HpaII	CCGG	2 cut(s)	240, 404
HphI	GGTGA	2 cut(s)	118, 254
Hpy188I	TCNGA	2 cut(s)	313, 543
Hpy188III	TCNNGA	5 cut(s)	22, 86, 470, 497, 584
HpyAV	CCTTC	2 cut(s)	467, 570
HpyCH4III	ACNGT	2 cut(s)	175, 250
HpyCH4V	TGCA	1 cut(s)	280
HpyF10VI	GCNNNNNNNGC	5 cut(s)	54, 299, 323, 521, 608
HpyF3I	CTNAG	1 cut(s)	303
Hsp92II	CATG	7 cut(s)	197, 226, 280, 284, 378, 587, 635
HspAI	GCGC	1 cut(s)	602
LguI	GCTCTTC	1 cut(s)	333
LmnI	GCTCC	2 cut(s)	520, 547
Lsp1109I	GCAGC	1 cut(s)	67
LweI	GCATC	2 cut(s)	67, 304
MaeI	CTAG	1 cut(s)	228
MbiI	CCGCTC	1 cut(s)	286
MboII	GAAGA	5 cut(s)	17, 61, 127, 320, 365
MhlI	GDGCHC	2 cut(s)	382, 496
MlsI	TGGCCA	1 cut(s)	57
MluCI	AATT	1 cut(s)	504
MluNI	TGGCCA	1 cut(s)	57
MlyI	GAGTC	1 cut(s)	213
MmeI	TCCRAC	1 cut(s)	232
MnlI	CCTC	6 cut(s)	18, 131, 179, 298, 329, 628
Mox20I	TGGCCA	1 cut(s)	57
Mph1103I	ATGCAT	1 cut(s)	282
MscI	TGGCCA	1 cut(s)	57
Msp20I	TGGCCA	1 cut(s)	57
MspI	CCGG	2 cut(s)	240, 404
MspR9I	CCNGG	2 cut(s)	333, 489
MvaI	CCWGG	2 cut(s)	333, 489
MwoI	GCNNNNNNNGC	5 cut(s)	54, 299, 323, 521, 608
NlaIII	CATG	7 cut(s)	197, 226, 280, 284, 378, 587, 635
NlaIV	GGNNCC	2 cut(s)	380, 639
NsiI	ATGCAT	1 cut(s)	282
NspI	RCATGY	1 cut(s)	280
PagI	TCATGA	1 cut(s)	583
PciSI	GCTCTTC	1 cut(s)	333
PfeI	GAWTC	3 cut(s)	308, 391, 477
PfoI	TCCNGGA	1 cut(s)	331
PkrI	GCNGC	1 cut(s)	82
PleI	GAGTC	1 cut(s)	212
PpsI	GAGTC	1 cut(s)	212
PpuMI	RGGWCCY	1 cut(s)	637
Psp5II	RGGWCCY	1 cut(s)	637
Psp6I	CCWGG	2 cut(s)	331, 487
PspGI	CCWGG	2 cut(s)	331, 487
PspN4I	GGNNCC	2 cut(s)	380, 639
PspOMI	GGGCCC	1 cut(s)	378
PspPI	GGNCC	3 cut(s)	378, 379, 637
PspPPI	RGGWCCY	1 cut(s)	637
RsaI	GTAC	1 cut(s)	431
RsaNI	GTAC	1 cut(s)	430
SapI	GCTCTTC	1 cut(s)	333
SatI	GCNGC	1 cut(s)	81
Sau96I	GGNCC	3 cut(s)	378, 379, 637
SchI	GAGTC	1 cut(s)	213
ScrFI	CCNGG	2 cut(s)	333, 489
SduI	GDGCHC	2 cut(s)	382, 496
SetI	ASST	7 cut(s)	190, 220, 295, 493, 593, 625, 647
SfaNI	GCATC	2 cut(s)	67, 304
SinI	GGWCC	1 cut(s)	637
SmlI	CTYRAG	2 cut(s)	86, 618
SmoI	CTYRAG	2 cut(s)	86, 618
Sse9I	AATT	1 cut(s)	504
SsiI	CCGC	1 cut(s)	286
SspMI	CTAG	1 cut(s)	228
StyD4I	CCNGG	2 cut(s)	331, 487
StyI	CCWWGG	1 cut(s)	641
TaaI	ACNGT	2 cut(s)	175, 250
TasI	AATT	1 cut(s)	504
TfiI	GAWTC	3 cut(s)	308, 391, 477
TscAI	CASTG	1 cut(s)	79
TseI	GCWGC	1 cut(s)	80
TspDTI	ATGAA	3 cut(s)	114, 469, 600
TspGWI	ACGGA	1 cut(s)	127
TspRI	CASTG	1 cut(s)	79
VpaK11BI	GGWCC	1 cut(s)	637
XceI	RCATGY	1 cut(s)	280
XspI	CTAG	1 cut(s)	228
Zsp2I	ATGCAT	1 cut(s)	282

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.