Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0001203

Physical Location & Seq

Genomic Coordinates Reverse (-)

24193942 .. 24196557

Gene Structure 2616 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g31610.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGGGTTTAGTATCCCAGACGGTGTTTGATGGAGGCTGCCATGTTCTTGGGGTCATTCCAAGAGCTCTCGTGCCTCGAGAGATATCTGGTGAAACTGTTGGAGAAGTAAGAATAGTTAGAGACATGCATGAGCGGAAAGCTTCTATGGCTGAGGAATCTGATGCCTTTATTGCTCTTCCTGGAGGATATGGAACGCTGGAAGAGACACTGGAGATGATAACATGGGCCCAACTTGGGATTCATAAAAAGCCGGTTGGTTTGCTAAATGTAGACGGGTACTATGACTGCTTGCTTTCACTATTTGACAATGGTGTTGATGAAGGATTCATCAAGCCAGCTGCTCGTGATATAGTTGTCTATGCTCCAACCGCCAAAGAACTTATGATCAAGATGGAGCAATACACTCCTTCCCATCAAGCTATTGCTTCTCATGAAAGCTGGAAAAAGGCACAACGAGAACTAGCTTCAAGCGATGAGGGGCCATCACTTCCATGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lysine_decarbox

Protein Analysis

166

Amino Acids

18.13

Weight (kDa)

4.97

Isoelectric Point (pI)

33.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LDcluster4	PF18306	15 - 121	1.1e-12	SLOG cluster4 family
Lysine_decarbox	PF03641	52 - 182	1.1e-45	Possible lysine decarboxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001203)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11950 AT5G11950 AT5G11950 AT5G11950 AT5G26140 AT5G26140 AT5G26140
fragaria_vesca	FvH4_2g31610 FvH4_2g31610 FvH4_2g31610 FvH4_2g38680 FvH4_2g38680 FvH4_3g04550 FvH4_3g04550 FvH4_3g04550
malus_domestica	MD03G1005300.v1.1 MD08G1014400.v1.1 MD08G1064800.v1.1 MD11G1007900.v1.1 MD15G1013800.v1.1 MD15G1056800.v1.1
prunus_persica	Prupe.1G367500_v2.0.a1 Prupe.1G409400_v2.0.a1 Prupe.1G409400_v2.0.a1 Prupe.1G409400_v2.0.a1 Prupe.1G409400_v2.0.a1 Prupe.1G409400_v2.0.a1 Prupe.1G409400_v2.0.a1 Prupe.1G409400_v2.0.a1 Prupe.6G005100_v2.0.a1 Prupe.6G005100_v2.0.a1
pyrus_communis	pycom03g00550 pycom08g01300 pycom08g05310 pycom11g00540 pycom15g01200 pycom15g05320
rosa_chinensis	RchiOBHm_Chr6g0302631 RchiOBHm_Chr6g0311211
rosa_laevigata	RLG00000010427 RLG00000011154
rosa_multiflora	Rmu_co8501517.1_g000001 Rmu_sc0005455.1_g000005
rosa_roxburghii	Rroxscaffold_7G00157900 Rroxscaffold_7G00165490
rosa_rugosa	Rorug06G0315600 Rorug06G0386400 Rorug06G0386500
rosa_samantha	Rh6AG428900 Rh6BG473600 Rh6BG511200 Rh6CG441200 Rh6CG517000 Rh6DG503500
rosa_wichuraiana	Rw6G037120 Rw6G043590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	133
AccI	GTMKAC	1 cut(s)	270
AciI	CCGC	2 cut(s)	133, 369
AfaI	GTAC	1 cut(s)	278
AfiI	CCNNNNNNNGG	1 cut(s)	234
AgsI	TTSAA	1 cut(s)	468
AjnI	CCWGG	1 cut(s)	178
AjuI	GAANNNNNNNTTGG	2 cut(s)	222, 254
AluBI	AGCT	6 cut(s)	65, 140, 338, 419, 438, 464
AluI	AGCT	6 cut(s)	65, 140, 338, 419, 438, 464
Alw21I	GWGCWC	1 cut(s)	67
Alw26I	GTCTC	2 cut(s)	114, 197
Ama87I	CYCGRG	1 cut(s)	75
AoxI	GGCC	2 cut(s)	225, 479
ApaI	GGGCCC	1 cut(s)	229
ApeKI	GCWGC	2 cut(s)	36, 338
AspS9I	GGNCC	3 cut(s)	225, 226, 479
AsuHPI	GGTGA	1 cut(s)	101
AvaI	CYCGRG	1 cut(s)	75
BaeGI	GKGCMC	1 cut(s)	229
BanII	GRGCYC	2 cut(s)	67, 229
BauI	CACGAG	2 cut(s)	68, 342
Bbv12I	GWGCWC	1 cut(s)	67
BbvCI	CCTCAGC	1 cut(s)	150
BbvI	GCAGC	2 cut(s)	23, 325
BccI	CCATC	4 cut(s)	23, 385, 420, 490
BciT130I	CCWGG	1 cut(s)	180
BciVI	GTATCC	1 cut(s)	22
BclI	TGATCA	1 cut(s)	384
BcoDI	GTCTC	2 cut(s)	114, 197
BfaI	CTAG	1 cut(s)	461
BfuI	GTATCC	1 cut(s)	22
BisI	GCNGC	2 cut(s)	37, 339
BlsI	GCNGC	2 cut(s)	38, 340
Bme1390I	CCNGG	1 cut(s)	180
BmeT110I	CYCGRG	1 cut(s)	75
BmgT120I	GGNCC	3 cut(s)	225, 226, 479
BmiI	GGNNCC	2 cut(s)	227, 480
BmrFI	CCNGG	1 cut(s)	180
BmsI	GCATC	1 cut(s)	151
BpmI	CTGGAG	2 cut(s)	201, 230
Bpu10I	CCTNAGC	1 cut(s)	150
BsaJI	CCNNGG	1 cut(s)	491
Bsc4I	CCNNNNNNNGG	1 cut(s)	234
Bse118I	RCCGGY	1 cut(s)	250
Bse1I	ACTGG	1 cut(s)	213
BseBI	CCWGG	1 cut(s)	180
BseDI	CCNNGG	1 cut(s)	491
BseLI	CCNNNNNNNGG	1 cut(s)	234
BseMII	CTCAG	1 cut(s)	141
BseNI	ACTGG	1 cut(s)	213
BseSI	GKGCMC	1 cut(s)	229
BseXI	GCAGC	2 cut(s)	23, 325
BshFI	GGCC	2 cut(s)	227, 481
BsiHKAI	GWGCWC	1 cut(s)	67
BsiHKCI	CYCGRG	1 cut(s)	75
BsiSI	CCGG	1 cut(s)	251
BslI	CCNNNNNNNGG	1 cut(s)	234
BsmAI	GTCTC	2 cut(s)	114, 197
BsnI	GGCC	2 cut(s)	227, 481
BsoBI	CYCGRG	1 cut(s)	75
Bsp120I	GGGCCC	1 cut(s)	225
Bsp1286I	GDGCHC	2 cut(s)	67, 229
Bsp143I	GATC	1 cut(s)	384
Bsp19I	CCATGG	1 cut(s)	491
BspACI	CCGC	2 cut(s)	133, 369
BspANI	GGCC	2 cut(s)	227, 481
BspCNI	CTCAG	1 cut(s)	142
BspHI	TCATGA	1 cut(s)	430
BspLI	GGNNCC	2 cut(s)	227, 480
BspQI	GCTCTTC	1 cut(s)	180
BsrBI	CCGCTC	1 cut(s)	133
BsrFI	RCCGGY	1 cut(s)	250
BsrI	ACTGG	1 cut(s)	213
BssAI	RCCGGY	1 cut(s)	250
BssECI	CCNNGG	1 cut(s)	491
BssMI	GATC	1 cut(s)	384
BssSI	CACGAG	2 cut(s)	68, 342
BssT1I	CCWWGG	1 cut(s)	491
Bst2BI	CACGAG	2 cut(s)	68, 342
Bst2UI	CCWGG	1 cut(s)	180
Bst4CI	ACNGT	2 cut(s)	22, 97
Bst6I	CTCTTC	2 cut(s)	180, 195
BstC8I	GCNNGC	2 cut(s)	290, 336
BstDEI	CTNAG	1 cut(s)	150
BstDSI	CCRYGG	1 cut(s)	491
BstKTI	GATC	1 cut(s)	387
BstMAI	GTCTC	2 cut(s)	114, 197
BstMBI	GATC	1 cut(s)	384
BstMWI	GCNNNNNNNGC	3 cut(s)	146, 170, 368
BstNI	CCWGG	1 cut(s)	180
BstNSI	RCATGY	1 cut(s)	127
BstSCI	CCNGG	1 cut(s)	178
BstSLI	GKGCMC	1 cut(s)	229
BstV1I	GCAGC	2 cut(s)	23, 325
BstXI	CCANNNNNNTGG	1 cut(s)	47
BsuI	GTATCC	1 cut(s)	22
BsuRI	GGCC	2 cut(s)	227, 481
BtgI	CCRYGG	1 cut(s)	491
BtgZI	GCGATG	1 cut(s)	486
BtsIMutI	CAGTG	1 cut(s)	206
Cac8I	GCNNGC	2 cut(s)	290, 336
CciI	TCATGA	1 cut(s)	430
Cfr10I	RCCGGY	1 cut(s)	250
Cfr13I	GGNCC	3 cut(s)	225, 226, 479
Csp6I	GTAC	1 cut(s)	277
CviAII	CATG	6 cut(s)	41, 124, 128, 222, 431, 492
CviQI	GTAC	1 cut(s)	277
DdeI	CTNAG	1 cut(s)	150
DpnI	GATC	1 cut(s)	386
DpnII	GATC	1 cut(s)	384
Eam1104I	CTCTTC	2 cut(s)	180, 195
EarI	CTCTTC	2 cut(s)	180, 195
Ecl136II	GAGCTC	1 cut(s)	65
Eco130I	CCWWGG	1 cut(s)	491
Eco24I	GRGCYC	2 cut(s)	67, 229
Eco32I	GATATC	1 cut(s)	84
Eco53kI	GAGCTC	1 cut(s)	65
Eco88I	CYCGRG	1 cut(s)	75
EcoICRI	GAGCTC	1 cut(s)	65
EcoRII	CCWGG	1 cut(s)	178
EcoRV	GATATC	1 cut(s)	84
EcoT14I	CCWWGG	1 cut(s)	491
EcoT22I	ATGCAT	1 cut(s)	129
EcoT38I	GRGCYC	2 cut(s)	67, 229
ErhI	CCWWGG	1 cut(s)	491
FaeI	CATG	6 cut(s)	44, 127, 131, 225, 434, 495
FatI	CATG	6 cut(s)	40, 123, 127, 221, 430, 491
FbaI	TGATCA	1 cut(s)	384
FblI	GTMKAC	1 cut(s)	270
Fnu4HI	GCNGC	2 cut(s)	37, 339
FriOI	GRGCYC	2 cut(s)	67, 229
Fsp4HI	GCNGC	2 cut(s)	37, 339
FspBI	CTAG	1 cut(s)	461
GluI	GCNGC	2 cut(s)	37, 339
GsuI	CTGGAG	2 cut(s)	201, 230
HaeIII	GGCC	2 cut(s)	227, 481
HapII	CCGG	1 cut(s)	251
Hin1II	CATG	6 cut(s)	44, 127, 131, 225, 434, 495
HindIII	AAGCTT	1 cut(s)	138
HinfI	GANTC	3 cut(s)	155, 238, 324
HpaII	CCGG	1 cut(s)	251
HphI	GGTGA	1 cut(s)	101
Hpy166II	GTNNAC	1 cut(s)	271
Hpy188I	TCNGA	1 cut(s)	160
Hpy188III	TCNNGA	4 cut(s)	77, 344, 388, 431
Hpy8I	GTNNAC	1 cut(s)	271
HpyAV	CCTTC	2 cut(s)	314, 417
HpyCH4III	ACNGT	2 cut(s)	22, 97
HpyCH4V	TGCA	1 cut(s)	127
HpyF10VI	GCNNNNNNNGC	3 cut(s)	146, 170, 368
HpyF3I	CTNAG	1 cut(s)	150
Hsp92II	CATG	6 cut(s)	44, 127, 131, 225, 434, 495
Ksp22I	TGATCA	1 cut(s)	384
Kzo9I	GATC	1 cut(s)	384
LguI	GCTCTTC	1 cut(s)	180
LmnI	GCTCC	2 cut(s)	367, 394
LpnPI	CCDG	9 cut(s)	29, 72, 165, 182, 192, 194, 264, 348, 424
Lsp1109I	GCAGC	2 cut(s)	23, 325
LweI	GCATC	1 cut(s)	151
MaeI	CTAG	1 cut(s)	461
MalI	GATC	1 cut(s)	386
MbiI	CCGCTC	1 cut(s)	133
MboI	GATC	1 cut(s)	384
MboII	GAAGA	2 cut(s)	167, 212
MhlI	GDGCHC	2 cut(s)	67, 229
MmeI	TCCRAC	2 cut(s)	79, 389
MnlI	CCTC	5 cut(s)	26, 84, 145, 176, 469
Mph1103I	ATGCAT	1 cut(s)	129
MslI	CAYNNNNRTG	1 cut(s)	490
MspA1I	CMGCKG	1 cut(s)	338
MspI	CCGG	1 cut(s)	251
MspR9I	CCNGG	1 cut(s)	180
MvaI	CCWGG	1 cut(s)	180
MwoI	GCNNNNNNNGC	3 cut(s)	146, 170, 368
NcoI	CCATGG	1 cut(s)	491
NdeII	GATC	1 cut(s)	384
NlaIII	CATG	6 cut(s)	44, 127, 131, 225, 434, 495
NlaIV	GGNNCC	2 cut(s)	227, 480
NsiI	ATGCAT	1 cut(s)	129
NspI	RCATGY	1 cut(s)	127
PaeR7I	CTCGAG	1 cut(s)	75
PagI	TCATGA	1 cut(s)	430
PciSI	GCTCTTC	1 cut(s)	180
PfeI	GAWTC	3 cut(s)	155, 238, 324
PfoI	TCCNGGA	1 cut(s)	178
PkrI	GCNGC	2 cut(s)	38, 340
Psp124BI	GAGCTC	1 cut(s)	67
Psp6I	CCWGG	1 cut(s)	178
PspGI	CCWGG	1 cut(s)	178
PspN4I	GGNNCC	2 cut(s)	227, 480
PspOMI	GGGCCC	1 cut(s)	225
PspPI	GGNCC	3 cut(s)	225, 226, 479
PvuII	CAGCTG	1 cut(s)	338
RsaI	GTAC	1 cut(s)	278
RsaNI	GTAC	1 cut(s)	277
RseI	CAYNNNNRTG	1 cut(s)	490
SacI	GAGCTC	1 cut(s)	67
SapI	GCTCTTC	1 cut(s)	180
SatI	GCNGC	2 cut(s)	37, 339
Sau3AI	GATC	1 cut(s)	384
Sau96I	GGNCC	3 cut(s)	225, 226, 479
ScrFI	CCNGG	1 cut(s)	180
SduI	GDGCHC	2 cut(s)	67, 229
SetI	ASST	6 cut(s)	67, 142, 340, 421, 440, 466
SfaNI	GCATC	1 cut(s)	151
Sfr274I	CTCGAG	1 cut(s)	75
SlaI	CTCGAG	1 cut(s)	75
SmiMI	CAYNNNNRTG	1 cut(s)	490
SmlI	CTYRAG	1 cut(s)	75
SmoI	CTYRAG	1 cut(s)	75
SsiI	CCGC	2 cut(s)	133, 369
SspMI	CTAG	1 cut(s)	461
SstI	GAGCTC	1 cut(s)	67
StyD4I	CCNGG	1 cut(s)	178
StyI	CCWWGG	1 cut(s)	491
TaaI	ACNGT	2 cut(s)	22, 97
TaqI	TCGA	1 cut(s)	76
TfiI	GAWTC	3 cut(s)	155, 238, 324
TscAI	CASTG	1 cut(s)	213
TseI	GCWGC	2 cut(s)	36, 338
TspDTI	ATGAA	4 cut(s)	230, 316, 333, 447
TspRI	CASTG	1 cut(s)	213
XceI	RCATGY	1 cut(s)	127
XcmI	CCANNNNNNNNNTGG	1 cut(s)	489
XhoI	CTCGAG	1 cut(s)	75
XmiI	GTMKAC	1 cut(s)	270
XspI	CTAG	1 cut(s)	461
Zsp2I	ATGCAT	1 cut(s)	129

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.