Rorug06G0386400

Possible lysine decarboxylase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Reverse (-)
53197466 .. 53197891
426 bp
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UTR
Exon/CDS
Intron
Rorug06G0386400.1

Sequence Viewer

Length: 207 bp
ATGCTTTGTTGGTCAGTAGCACATTTCAGTACCCATTTCACTTTCCTGATCGACACGAATGAAGAAGAAACTCAAATTTTCAATGGTTGCAAATTTCAGAGGCCTACTGGAGCCATACATTCTTCAATGCAGGTATTCCAACTCATATATGTTGGAATTCTCACAATACGCCCCGGTCCACAGCTGCTTTCATGCATTGGAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

68

Amino Acids

7.65

Weight (kDa)

6.22

Isoelectric Point (pI)

25.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 121
AcsI RAATTY 3 cut(s) 75, 92, 156
AfaI GTAC 1 cut(s) 31
AgsI TTSAA 2 cut(s) 82, 126
AluBI AGCT 2 cut(s) 184, 203
AluI AGCT 2 cut(s) 184, 203
AoxI GGCC 1 cut(s) 101
ApeKI GCWGC 1 cut(s) 184
ApoI RAATTY 3 cut(s) 75, 92, 156
AspS9I GGNCC 1 cut(s) 176
AsuC2I CCSGG 1 cut(s) 174
AvaII GGWCC 1 cut(s) 176
BbvI GCAGC 1 cut(s) 171
BcnI CCSGG 1 cut(s) 174
BfuAI ACCTGC 1 cut(s) 121
BisI GCNGC 1 cut(s) 185
BlsI GCNGC 1 cut(s) 186
Bme1390I CCNGG 1 cut(s) 174
Bme18I GGWCC 1 cut(s) 176
BmgT120I GGNCC 1 cut(s) 176
BmiI GGNNCC 1 cut(s) 112
BmrFI CCNGG 1 cut(s) 174
BpmI CTGGAG 1 cut(s) 129
BpuMI CCSGG 1 cut(s) 174
BsaJI CCNNGG 1 cut(s) 172
Bse1I ACTGG 1 cut(s) 112
BseDI CCNNGG 1 cut(s) 172
BseNI ACTGG 1 cut(s) 112
BseXI GCAGC 1 cut(s) 171
BshFI GGCC 1 cut(s) 103
BsiSI CCGG 1 cut(s) 174
BsnI GGCC 1 cut(s) 103
Bsp143I GATC 1 cut(s) 48
BspANI GGCC 1 cut(s) 103
BspLI GGNNCC 1 cut(s) 112
BspMI ACCTGC 1 cut(s) 121
BsrI ACTGG 1 cut(s) 112
BssECI CCNNGG 1 cut(s) 172
BssMI GATC 1 cut(s) 48
BstKTI GATC 1 cut(s) 51
BstMBI GATC 1 cut(s) 48
BstSCI CCNGG 1 cut(s) 172
BstV1I GCAGC 1 cut(s) 171
BsuRI GGCC 1 cut(s) 103
BveI ACCTGC 1 cut(s) 121
Cfr13I GGNCC 1 cut(s) 176
Csp6I GTAC 1 cut(s) 30
CviAII CATG 1 cut(s) 192
CviJI RGCY 4 cut(s) 103, 113, 184, 203
CviKI_1 RGCY 4 cut(s) 103, 113, 184, 203
CviQI GTAC 1 cut(s) 30
DpnI GATC 1 cut(s) 50
DpnII GATC 1 cut(s) 48
Eco147I AGGCCT 1 cut(s) 103
Eco47I GGWCC 1 cut(s) 176
EcoRI GAATTC 1 cut(s) 156
EcoT22I ATGCAT 1 cut(s) 197
FaeI CATG 1 cut(s) 195
FaiI YATR 5 cut(s) 116, 146, 148, 150, 193
FatI CATG 1 cut(s) 191
Fnu4HI GCNGC 1 cut(s) 185
Fsp4HI GCNGC 1 cut(s) 185
GluI GCNGC 1 cut(s) 185
GsuI CTGGAG 1 cut(s) 129
HaeIII GGCC 1 cut(s) 103
HapII CCGG 1 cut(s) 174
Hin1II CATG 1 cut(s) 195
HpaII CCGG 1 cut(s) 174
Hpy166II GTNNAC 1 cut(s) 179
Hpy188I TCNGA 1 cut(s) 99
Hpy188III TCNNGA 1 cut(s) 46
Hpy8I GTNNAC 1 cut(s) 179
HpyCH4V TGCA 3 cut(s) 90, 130, 195
Hsp92II CATG 1 cut(s) 195
Kzo9I GATC 1 cut(s) 48
LmnI GCTCC 2 cut(s) 110, 200
LpnPI CCDG 4 cut(s) 59, 93, 116, 187
Lsp1109I GCAGC 1 cut(s) 171
MalI GATC 1 cut(s) 50
MboI GATC 1 cut(s) 48
MboII GAAGA 3 cut(s) 74, 77, 114
MluCI AATT 3 cut(s) 75, 92, 156
MmeI TCCRAC 2 cut(s) 133, 163
MnlI CCTC 1 cut(s) 93
Mph1103I ATGCAT 1 cut(s) 197
MspA1I CMGCKG 1 cut(s) 184
MspI CCGG 1 cut(s) 174
MspR9I CCNGG 1 cut(s) 174
NciI CCSGG 1 cut(s) 174
NdeII GATC 1 cut(s) 48
NlaIII CATG 1 cut(s) 195
NlaIV GGNNCC 1 cut(s) 112
NsiI ATGCAT 1 cut(s) 197
PceI AGGCCT 1 cut(s) 103
PkrI GCNGC 1 cut(s) 186
PspN4I GGNNCC 1 cut(s) 112
PspPI GGNCC 1 cut(s) 176
PvuII CAGCTG 1 cut(s) 184
RsaI GTAC 1 cut(s) 31
RsaNI GTAC 1 cut(s) 30
SatI GCNGC 1 cut(s) 185
Sau3AI GATC 1 cut(s) 48
Sau96I GGNCC 1 cut(s) 176
ScrFI CCNGG 1 cut(s) 174
SetI ASST 3 cut(s) 135, 186, 205
SgeI CNNG 6 cut(s) 58, 67, 120, 143, 185, 186
SinI GGWCC 1 cut(s) 176
Sse9I AATT 3 cut(s) 75, 92, 156
SseBI AGGCCT 1 cut(s) 103
StuI AGGCCT 1 cut(s) 103
StyD4I CCNGG 1 cut(s) 172
TaqI TCGA 1 cut(s) 51
TasI AATT 3 cut(s) 75, 92, 156
TseI GCWGC 1 cut(s) 184
TspDTI ATGAA 2 cut(s) 75, 180
VpaK11BI GGWCC 1 cut(s) 176
XapI RAATTY 3 cut(s) 75, 92, 156
Zsp2I ATGCAT 1 cut(s) 197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.