Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0001203

Physical Location & Seq

Genomic Coordinates Reverse (-)

27914901 .. 27917618

Gene Structure 2718 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g38680.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGGAGAACATTCAAGAACAACCACAACAACAACAAGAGGGTGTTATGAAATCTTCAAGATTCAAGCGTGTCTGTGTTTTCTGTGGTAGCAGTCCTGGAAAGAACCCAAGTTACCAGCTTGCTGCTGTAGAACTTGGAAAGCAGCTGGTTGAAAGAAACATTGACTTGGTTTATGGAGGAGGGAGCATTGGTTTGATGGGGCAGGTCTCAAAAGCTGTATATGATGGTGGTCGGCACGTGTTAGGAGTAATGCCCCTAACTCTCATGCCAAGAGAGATCACTGGAGATCCTGTGGGAGAAGTAAGAGCTGTATCTGGTATGCACCAGCGCAAAGCGGAAATGGCTCGTCAAGCCGATGCCTTTGTTGCCTTGCCAGGAGGCTATGGTACCTTAGAAGAACTCTTGGAAGTGATCGCTTGGGCTCAGTTGGGAATTCATCATAAACCAGTGGGGTTGTTAAATGTAGATGGGTACTACAACTTTCTCCTGACCTTCATAGACAATTCTGTGAATGAAGGTTTCATTGACCCTTCAGCTAGGCACATTATTGTGTCTGCCCCGACTGCGCATGAACTTATGTGCAAACTTGAGGAATATACTCCCAAGCATTCTGGGCTGAGTTGGGAGAAGGAGCAACTGGAATACACTGCAAAGTCAGACATTGCTCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lysine_decarbox

Protein Analysis

224

Amino Acids

24.53

Weight (kDa)

5.81

Isoelectric Point (pI)

44.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LDcluster4	PF18306	29 - 154	3e-13	SLOG cluster4 family
Lysine_decarbox	PF03641	66 - 195	1.1e-45	Possible lysine decarboxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001203)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11950 AT5G11950 AT5G11950 AT5G11950 AT5G26140 AT5G26140 AT5G26140
fragaria_vesca	FvH4_2g31610 FvH4_2g31610 FvH4_2g31610 FvH4_2g38680 FvH4_2g38680 FvH4_3g04550 FvH4_3g04550 FvH4_3g04550
malus_domestica	MD03G1005300.v1.1 MD08G1014400.v1.1 MD08G1064800.v1.1 MD11G1007900.v1.1 MD15G1013800.v1.1 MD15G1056800.v1.1
prunus_persica	Prupe.1G367500_v2.0.a1 Prupe.1G409400_v2.0.a1 Prupe.1G409400_v2.0.a1 Prupe.1G409400_v2.0.a1 Prupe.1G409400_v2.0.a1 Prupe.1G409400_v2.0.a1 Prupe.1G409400_v2.0.a1 Prupe.1G409400_v2.0.a1 Prupe.6G005100_v2.0.a1 Prupe.6G005100_v2.0.a1
pyrus_communis	pycom03g00550 pycom08g01300 pycom08g05310 pycom11g00540 pycom15g01200 pycom15g05320
rosa_chinensis	RchiOBHm_Chr6g0302631 RchiOBHm_Chr6g0311211
rosa_laevigata	RLG00000010427 RLG00000011154
rosa_multiflora	Rmu_co8501517.1_g000001 Rmu_sc0005455.1_g000005
rosa_roxburghii	Rroxscaffold_7G00157900 Rroxscaffold_7G00165490
rosa_rugosa	Rorug06G0315600 Rorug06G0386400 Rorug06G0386500
rosa_samantha	Rh6AG428900 Rh6BG473600 Rh6BG511200 Rh6CG441200 Rh6CG517000 Rh6DG503500
rosa_wichuraiana	Rw6G037120 Rw6G043590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	567
Acc36I	ACCTGC	1 cut(s)	193
Acc65I	GGTACC	1 cut(s)	386
AccB1I	GGYRCC	1 cut(s)	386
AciI	CCGC	1 cut(s)	335
AclWI	GGATC	1 cut(s)	281
AcsI	RAATTY	1 cut(s)	432
AcuI	CTGAAG	1 cut(s)	516
AcvI	CACGTG	1 cut(s)	238
AfaI	GTAC	2 cut(s)	388, 473
AflIII	ACRYGT	1 cut(s)	237
AgsI	TTSAA	4 cut(s)	14, 57, 64, 152
AjnI	CCWGG	2 cut(s)	94, 373
AluBI	AGCT	5 cut(s)	118, 145, 215, 308, 536
AluI	AGCT	5 cut(s)	118, 145, 215, 308, 536
Alw26I	GTCTC	1 cut(s)	211
AlwI	GGATC	1 cut(s)	281
ApeKI	GCWGC	2 cut(s)	122, 142
ApoI	RAATTY	1 cut(s)	432
Asp718I	GGTACC	1 cut(s)	386
AspLEI	GCGC	2 cut(s)	330, 568
BanI	GGYRCC	1 cut(s)	386
BanII	GRGCYC	1 cut(s)	424
BbrPI	CACGTG	1 cut(s)	238
BbvI	GCAGC	2 cut(s)	109, 154
BccI	CCATC	3 cut(s)	190, 218, 461
BciT130I	CCWGG	2 cut(s)	96, 375
BcoDI	GTCTC	1 cut(s)	211
BfaI	CTAG	1 cut(s)	537
BfmI	CTRYAG	1 cut(s)	126
BfuAI	ACCTGC	1 cut(s)	193
BisI	GCNGC	2 cut(s)	123, 143
BlsI	GCNGC	2 cut(s)	124, 144
Bme1390I	CCNGG	2 cut(s)	96, 375
BmiI	GGNNCC	1 cut(s)	388
BmrFI	CCNGG	2 cut(s)	96, 375
BmsI	GCATC	1 cut(s)	346
BpmI	CTGGAG	1 cut(s)	303
BpuEI	CTTGAG	1 cut(s)	608
BsaAI	YACGTR	1 cut(s)	238
BsaI	GGTCTC	1 cut(s)	211
BsaXI	ACNNNNNCTCC	4 cut(s)	175, 205, 276, 306
Bse1I	ACTGG	3 cut(s)	286, 446, 642
Bse3DI	GCAATG	1 cut(s)	660
BseBI	CCWGG	2 cut(s)	96, 375
BseMI	GCAATG	1 cut(s)	660
BseMII	CTCAG	2 cut(s)	437, 608
BseNI	ACTGG	3 cut(s)	286, 446, 642
BseRI	GAGGAG	1 cut(s)	192
BseXI	GCAGC	2 cut(s)	109, 154
BshNI	GGYRCC	1 cut(s)	386
BsmAI	GTCTC	1 cut(s)	211
BsmI	GAATGC	1 cut(s)	607
Bso31I	GGTCTC	1 cut(s)	211
Bsp1286I	GDGCHC	1 cut(s)	424
Bsp143I	GATC	3 cut(s)	276, 286, 411
BspACI	CCGC	1 cut(s)	335
BspCNI	CTCAG	2 cut(s)	436, 609
BspLI	GGNNCC	1 cut(s)	388
BspMI	ACCTGC	1 cut(s)	193
BspPI	GGATC	1 cut(s)	281
BspT107I	GGYRCC	1 cut(s)	386
BspTNI	GGTCTC	1 cut(s)	211
BsrDI	GCAATG	1 cut(s)	660
BsrI	ACTGG	3 cut(s)	286, 446, 642
BssMI	GATC	3 cut(s)	276, 286, 411
Bst2UI	CCWGG	2 cut(s)	96, 375
BstBAI	YACGTR	1 cut(s)	238
BstC8I	GCNNGC	1 cut(s)	120
BstDEI	CTNAG	3 cut(s)	391, 423, 617
BstHHI	GCGC	2 cut(s)	330, 568
BstKTI	GATC	3 cut(s)	279, 289, 414
BstMAI	GTCTC	1 cut(s)	211
BstMBI	GATC	3 cut(s)	276, 286, 411
BstMWI	GCNNNNNNNGC	5 cut(s)	341, 350, 365, 563, 613
BstNI	CCWGG	2 cut(s)	96, 375
BstSCI	CCNGG	2 cut(s)	94, 373
BstSFI	CTRYAG	1 cut(s)	126
BstV1I	GCAGC	2 cut(s)	109, 154
BstX2I	RGATCY	1 cut(s)	286
BstYI	RGATCY	1 cut(s)	286
BtsI	GCAGTG	1 cut(s)	645
BtsIMutI	CAGTG	3 cut(s)	279, 453, 645
BveI	ACCTGC	1 cut(s)	193
Cac8I	GCNNGC	1 cut(s)	120
CfoI	GCGC	2 cut(s)	330, 568
Csp6I	GTAC	2 cut(s)	387, 472
CviAII	CATG	2 cut(s)	265, 569
CviQI	GTAC	2 cut(s)	387, 472
DdeI	CTNAG	3 cut(s)	391, 423, 617
DpnI	GATC	3 cut(s)	278, 288, 413
DpnII	GATC	3 cut(s)	276, 286, 411
Eco24I	GRGCYC	1 cut(s)	424
Eco31I	GGTCTC	1 cut(s)	211
Eco57I	CTGAAG	1 cut(s)	516
Eco72I	CACGTG	1 cut(s)	238
EcoRI	GAATTC	1 cut(s)	432
EcoRII	CCWGG	2 cut(s)	94, 373
EcoT38I	GRGCYC	1 cut(s)	424
FaeI	CATG	2 cut(s)	268, 572
FatI	CATG	2 cut(s)	264, 568
Fnu4HI	GCNGC	2 cut(s)	123, 143
FriOI	GRGCYC	1 cut(s)	424
Fsp4HI	GCNGC	2 cut(s)	123, 143
FspBI	CTAG	1 cut(s)	537
FspI	TGCGCA	1 cut(s)	567
GlaI	GCGC	2 cut(s)	329, 567
GluI	GCNGC	2 cut(s)	123, 143
GsuI	CTGGAG	1 cut(s)	303
HhaI	GCGC	2 cut(s)	330, 568
Hin1II	CATG	2 cut(s)	268, 572
Hin6I	GCGC	2 cut(s)	328, 566
HinP1I	GCGC	2 cut(s)	328, 566
HinfI	GANTC	1 cut(s)	60
Hpy188I	TCNGA	1 cut(s)	658
Hpy188III	TCNNGA	3 cut(s)	14, 57, 487
HpyAV	CCTTC	4 cut(s)	502, 509, 540, 622
HpyCH4IV	ACGT	1 cut(s)	237
HpyCH4V	TGCA	3 cut(s)	322, 582, 650
HpyF10VI	GCNNNNNNNGC	5 cut(s)	341, 350, 365, 563, 613
HpyF3I	CTNAG	3 cut(s)	391, 423, 617
HpySE526I	ACGT	1 cut(s)	237
Hsp92II	CATG	2 cut(s)	268, 572
HspAI	GCGC	2 cut(s)	328, 566
KpnI	GGTACC	1 cut(s)	390
Kzo9I	GATC	3 cut(s)	276, 286, 411
LmnI	GCTCC	2 cut(s)	183, 631
Lsp1109I	GCAGC	2 cut(s)	109, 154
LweI	GCATC	1 cut(s)	346
MaeI	CTAG	1 cut(s)	537
MaeII	ACGT	1 cut(s)	237
MaeIII	GTNAC	1 cut(s)	110
MalI	GATC	3 cut(s)	278, 288, 413
MboI	GATC	3 cut(s)	276, 286, 411
MboII	GAAGA	2 cut(s)	45, 407
MflI	RGATCY	1 cut(s)	286
MhlI	GDGCHC	1 cut(s)	424
MluCI	AATT	2 cut(s)	432, 502
MnlI	CCTC	5 cut(s)	31, 170, 173, 371, 583
MseI	TTAA	1 cut(s)	458
MslI	CAYNNNNRTG	1 cut(s)	548
MspA1I	CMGCKG	1 cut(s)	145
MspR9I	CCNGG	2 cut(s)	96, 375
Mva1269I	GAATGC	1 cut(s)	607
MvaI	CCWGG	2 cut(s)	96, 375
MwoI	GCNNNNNNNGC	5 cut(s)	341, 350, 365, 563, 613
NdeII	GATC	3 cut(s)	276, 286, 411
NlaIII	CATG	2 cut(s)	268, 572
NlaIV	GGNNCC	1 cut(s)	388
NsbI	TGCGCA	1 cut(s)	567
PctI	GAATGC	1 cut(s)	607
PfeI	GAWTC	1 cut(s)	60
PfoI	TCCNGGA	1 cut(s)	94
PkrI	GCNGC	2 cut(s)	124, 144
PmaCI	CACGTG	1 cut(s)	238
PmlI	CACGTG	1 cut(s)	238
Ppu21I	YACGTR	1 cut(s)	238
Psp6I	CCWGG	2 cut(s)	94, 373
PspCI	CACGTG	1 cut(s)	238
PspGI	CCWGG	2 cut(s)	94, 373
PspN4I	GGNNCC	1 cut(s)	388
PsrI	GAACNNNNNNTAC	2 cut(s)	95, 127
PsuI	RGATCY	1 cut(s)	286
PvuII	CAGCTG	1 cut(s)	145
RsaI	GTAC	2 cut(s)	388, 473
RsaNI	GTAC	2 cut(s)	387, 472
RseI	CAYNNNNRTG	1 cut(s)	548
SaqAI	TTAA	1 cut(s)	458
SatI	GCNGC	2 cut(s)	123, 143
Sau3AI	GATC	3 cut(s)	276, 286, 411
ScrFI	CCNGG	2 cut(s)	96, 375
SduI	GDGCHC	1 cut(s)	424
SfaNI	GCATC	1 cut(s)	346
SfcI	CTRYAG	1 cut(s)	126
SmiMI	CAYNNNNRTG	1 cut(s)	548
SmlI	CTYRAG	1 cut(s)	587
SmoI	CTYRAG	1 cut(s)	587
Sse9I	AATT	2 cut(s)	432, 502
SsiI	CCGC	1 cut(s)	335
SspMI	CTAG	1 cut(s)	537
StyD4I	CCNGG	2 cut(s)	94, 373
TaiI	ACGT	1 cut(s)	240
TasI	AATT	2 cut(s)	432, 502
TfiI	GAWTC	1 cut(s)	60
Tru1I	TTAA	1 cut(s)	458
Tru9I	TTAA	1 cut(s)	458
TscAI	CASTG	3 cut(s)	286, 453, 652
TseI	GCWGC	2 cut(s)	122, 142
TspDTI	ATGAA	6 cut(s)	62, 425, 484, 511, 528, 585
TspRI	CASTG	3 cut(s)	286, 453, 652
XapI	RAATTY	1 cut(s)	432
XspI	CTAG	1 cut(s)	537

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.