Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002797

Physical Location & Seq

Genomic Coordinates Forward (+)

5809334 .. 5810962

Gene Structure 1629 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G17630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1254 bp

ATGATCTCCCTGAATCTATCTCCTTCCCTCAATCCGGGTCTCCTCCACAAGACCCGGACCTGTCAACAACCGACCCGTCTCTCTGCTCTTCTCGTCACCAACCCTAAACCCTTCAATCACAGACACCCACTAGGGCTTTCACCGATTCCCAATCTCCAGATTCGTGATGTTTCCGCAAAACCCTTGCTTTCACTCACAAACCCTGAATCCTCATCTGGGTTCTCGAGAAAACCCAGATCCATCGCCGCCGTTGGCTCATCGGATTCAAATCCAGACGAAAAATCCGATCTTGGTGAAGCGGAGAAGAAAGAGAAGAAGGCTAAGACTCTTCAGCTAGGGATTGTGTTTGGTCTTTGGTATTTCCAGAACATCGTCTTCAACATCTTCAACAAAAAGGCACTCAATGTCTTTCCTTATCCATGGCTTCTCGCTTCGTTTCAGCTCTTCGCAGGTTCTATTTGGATGCTTGTCTTATGGTCCTTTAAGCTTTACCCCTGCCCTAAAATCTCCAAGCCTTTTATCATTGCTCTCCTTGGTCCTGCATTGTTCCACACTATTGGACATATCTCAGCTTGTGTCTCATTCTCCAAAGTCGCTGTTTCGTTCACTCATGTTATCAAATCAGCAGAGCCTGTCTTCTCTGTTATCTTCTCGTCTTTACTCGGTGATTCGTATCCGTTAGCTGTCTGGTTATCGATTCTTCCGATTGTTATGGGTTGTTCTTTAGCTGCAGTCACTGAAGTGTCATTCAATTTAGGTGGATTATCAGGAGCTATGATTAGTAACGTTGGTTTTGTCTTGAGAAACATTTACTCTAAACGTAGCTTACAGAGCTTTAAAGAGATTGATGGATTGAATCTATACGGTTGCATCAGTATACTCTCTCTGCTTTATCTGTTTCCCGTGGCGATTTTCGTTGAAGGATCACATTGGGTTCCAGGTTACCATAAAGCCATTGCATCTGTTGGGACACCATCAACGTTCTACTTTTGGGTTTTGCTCTCTGGTGTCTTCTATCATCTGTACAACCAGTCTTCTTACCAGGCACTCGACGAGATCAGTCCATTGACTTTCTCTGTTGGGAACACGATGAAGCGAGTCGTGGTGATTATCTCCACTGTTTTGGTGTTTAGGAATCCTGTTAGACCTCTGAATGCTCTTGGATCAGCCATTGCGATTTTCGGTACCTTCTTGTATTCTCAGGCCACTGCAAAGAAGAAGAAGATTGAAGTGGGAGGTGATAAGAAGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006820 GO:0008028 GO:0008150 GO:0008509 GO:0008514 GO:0008643 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0015075 GO:0015120 GO:0015144 GO:0015318 GO:0015605 GO:0015711 GO:0015713 GO:0015717 GO:0015718 GO:0015748 GO:0015849 GO:0022857 GO:0031967 GO:0031975 GO:0034219 GO:0034220 GO:0035436 GO:0042873 GO:0042879 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071917 GO:0098656 GO:1901264 GO:1901505 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

417

Amino Acids

45.77

Weight (kDa)

9.72

Isoelectric Point (pI)

43.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPT	PF03151	110 - 400	1.2e-115	Triose-phosphate Transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002797)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17630
fragaria_vesca	FvH4_7g07680
malus_domestica	MD02G1233400.v1.1 MD04G1135700.v1.1 MD04G1135800.v1.1 MD07G1080200.v1.1
prunus_persica	Prupe.2G104200_v2.0.a1
pyrus_communis	pycom02g20160 pycom07g06380 pycom12g15330
rosa_chinensis	RchiOBHm_Chr1g0342641 RchiOBHm_Chr2g0089941 RchiOBHm_Chr2g0137951 RchiOBHm_Chr5g0045131 RchiOBHm_Chr5g0045141
rosa_laevigata	RLG00000009883 RLG00000029167 RLG00000029185
rosa_multiflora	Rmu_sc0000539.1_g000061 Rmu_sc0005365.1_g000006 Rmu_sc0007318.1_g000001 Rmu_ssc0000177.1_g000005
rosa_roxburghii	Rroxscaffold_4G00313140 Rroxscaffold_6G00402970
rosa_rugosa	Rorug01G0146900.1 Rorug04G0068400 Rorug04G0068500 Rorug04G0068600 Rorug07G0164400 Rorug07G0164400
rosa_samantha	Rh1AG165200 Rh1AG191600 Rh1BG131300 Rh1CG153800 Rh1DG166400 Rh2BG401800 Rh5BG310600 Rh5DG321000
rosa_wichuraiana	Rw1G013710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	440
Acc65I	GGTACC	1 cut(s)	1184
AccB1I	GGYRCC	1 cut(s)	1184
AccI	GTMKAC	1 cut(s)	877
AciI	CCGC	3 cut(s)	174, 246, 299
AclI	AACGTT	2 cut(s)	786, 980
AclWI	GGATC	3 cut(s)	231, 931, 1171
AcuI	CTGAAG	2 cut(s)	314, 759
AfaI	GTAC	2 cut(s)	1025, 1186
AfiI	CCNNNNNNNGG	2 cut(s)	34, 216
AgsI	TTSAA	8 cut(s)	115, 267, 379, 388, 751, 856, 920, 1229
AjnI	CCWGG	2 cut(s)	937, 1041
AleI	CACNNNNGTG	1 cut(s)	740
AluBI	AGCT	9 cut(s)	334, 442, 487, 572, 683, 728, 773, 825, 834
AluI	AGCT	9 cut(s)	334, 442, 487, 572, 683, 728, 773, 825, 834
Alw26I	GTCTC	3 cut(s)	44, 83, 583
AlwI	GGATC	3 cut(s)	231, 931, 1171
AlwNI	CAGNNNCTG	2 cut(s)	632, 737
Ama87I	CYCGRG	1 cut(s)	223
AoxI	GGCC	1 cut(s)	1203
ApeKI	GCWGC	1 cut(s)	728
Asp718I	GGTACC	1 cut(s)	1184
AspS9I	GGNCC	3 cut(s)	57, 477, 536
AsuC2I	CCSGG	2 cut(s)	36, 55
AsuHPI	GGTGA	6 cut(s)	88, 132, 305, 677, 1117, 1250
AvaI	CYCGRG	1 cut(s)	223
AvaII	GGWCC	3 cut(s)	57, 477, 536
BanI	GGYRCC	1 cut(s)	1184
BbsI	GAAGAC	4 cut(s)	367, 628, 1003, 1026
BbvI	GCAGC	1 cut(s)	715
BccI	CCATC	3 cut(s)	248, 842, 982
BceAI	ACGGC	1 cut(s)	233
BciT130I	CCWGG	2 cut(s)	939, 1043
BciVI	GTATCC	1 cut(s)	684
BcnI	CCSGG	2 cut(s)	36, 55
BcoDI	GTCTC	3 cut(s)	44, 83, 583
BfaI	CTAG	2 cut(s)	131, 335
BfmI	CTRYAG	1 cut(s)	729
BfuAI	ACCTGC	1 cut(s)	440
BfuI	GTATCC	1 cut(s)	684
BisI	GCNGC	2 cut(s)	246, 729
BlsI	GCNGC	2 cut(s)	247, 730
Bme1390I	CCNGG	4 cut(s)	36, 55, 939, 1043
Bme18I	GGWCC	3 cut(s)	57, 477, 536
BmeT110I	CYCGRG	1 cut(s)	223
BmgT120I	GGNCC	3 cut(s)	57, 477, 536
BmiI	GGNNCC	2 cut(s)	936, 1186
BmrFI	CCNGG	4 cut(s)	36, 55, 939, 1043
BmsI	GCATC	3 cut(s)	453, 879, 968
BpiI	GAAGAC	4 cut(s)	367, 628, 1003, 1026
BpmI	CTGGAG	1 cut(s)	140
BpuEI	CTTGAG	1 cut(s)	820
BpuMI	CCSGG	2 cut(s)	36, 55
Bsa29I	ATCGAT	1 cut(s)	695
BsaBI	GATNNNNATC	2 cut(s)	267, 672
BsaI	GGTCTC	1 cut(s)	44
BsaJI	CCNNGG	3 cut(s)	419, 532, 903
Bsc4I	CCNNNNNNNGG	2 cut(s)	34, 216
Bse1I	ACTGG	1 cut(s)	1030
Bse3DI	GCAATG	3 cut(s)	522, 954, 1170
Bse8I	GATNNNNATC	2 cut(s)	267, 672
BseBI	CCWGG	2 cut(s)	939, 1043
BseCI	ATCGAT	1 cut(s)	695
BseDI	CCNNGG	3 cut(s)	419, 532, 903
BseGI	GGATG	1 cut(s)	468
BseJI	GATNNNNATC	2 cut(s)	267, 672
BseLI	CCNNNNNNNGG	2 cut(s)	34, 216
BseMI	GCAATG	3 cut(s)	522, 954, 1170
BseMII	CTCAG	2 cut(s)	582, 1214
BseNI	ACTGG	1 cut(s)	1030
BseRI	GAGGAG	1 cut(s)	32
BseXI	GCAGC	1 cut(s)	715
BshFI	GGCC	1 cut(s)	1205
BshNI	GGYRCC	1 cut(s)	1184
BshVI	ATCGAT	1 cut(s)	695
BsiHKCI	CYCGRG	1 cut(s)	223
BsiSI	CCGG	2 cut(s)	35, 55
BslFI	GGGAC	1 cut(s)	982
BslI	CCNNNNNNNGG	2 cut(s)	34, 216
BsmAI	GTCTC	3 cut(s)	44, 83, 583
BsmBI	CGTCTC	1 cut(s)	83
BsmFI	GGGAC	1 cut(s)	982
BsmI	GAATGC	1 cut(s)	1159
BsnI	GGCC	1 cut(s)	1205
Bso31I	GGTCTC	1 cut(s)	44
BsoBI	CYCGRG	1 cut(s)	223
Bsp1407I	TGTACA	1 cut(s)	1023
Bsp143I	GATC	6 cut(s)	3, 236, 286, 923, 1056, 1163
Bsp19I	CCATGG	1 cut(s)	419
BspACI	CCGC	3 cut(s)	174, 246, 299
BspANI	GGCC	1 cut(s)	1205
BspCNI	CTCAG	2 cut(s)	581, 1213
BspDI	ATCGAT	1 cut(s)	695
BspLI	GGNNCC	2 cut(s)	936, 1186
BspMAI	CTGCAG	1 cut(s)	733
BspMI	ACCTGC	1 cut(s)	440
BspPI	GGATC	3 cut(s)	231, 931, 1171
BspQI	GCTCTTC	2 cut(s)	93, 449
BspT107I	GGYRCC	1 cut(s)	1184
BspTNI	GGTCTC	1 cut(s)	44
BsrDI	GCAATG	3 cut(s)	522, 954, 1170
BsrGI	TGTACA	1 cut(s)	1023
BsrI	ACTGG	1 cut(s)	1030
BssECI	CCNNGG	3 cut(s)	419, 532, 903
BssMI	GATC	6 cut(s)	3, 236, 286, 923, 1056, 1163
BssNAI	GTATAC	1 cut(s)	878
BssT1I	CCWWGG	2 cut(s)	419, 532
Bst1107I	GTATAC	1 cut(s)	878
Bst2UI	CCWGG	2 cut(s)	939, 1043
Bst4CI	ACNGT	2 cut(s)	866, 1120
Bst6I	CTCTTC	3 cut(s)	93, 333, 449
BstAUI	TGTACA	1 cut(s)	1023
BstDEI	CTNAG	3 cut(s)	321, 568, 1200
BstDSI	CCRYGG	2 cut(s)	419, 903
BstEII	GGTNACC	1 cut(s)	941
BstF5I	GGATG	1 cut(s)	468
BstKTI	GATC	6 cut(s)	6, 239, 289, 926, 1059, 1166
BstMAI	GTCTC	3 cut(s)	44, 83, 583
BstMBI	GATC	6 cut(s)	3, 236, 286, 923, 1056, 1163
BstMWI	GCNNNNNNNGC	1 cut(s)	831
BstNI	CCWGG	2 cut(s)	939, 1043
BstPI	GGTNACC	1 cut(s)	941
BstSCI	CCNGG	4 cut(s)	34, 53, 937, 1041
BstSFI	CTRYAG	1 cut(s)	729
BstV1I	GCAGC	1 cut(s)	715
BstV2I	GAAGAC	4 cut(s)	367, 628, 1003, 1026
BstX2I	RGATCY	1 cut(s)	236
BstXI	CCANNNNNNTGG	2 cut(s)	557, 1123
BstYI	RGATCY	1 cut(s)	236
BstZ17I	GTATAC	1 cut(s)	878
Bsu15I	ATCGAT	1 cut(s)	695
BsuI	GTATCC	1 cut(s)	684
BsuRI	GGCC	1 cut(s)	1205
BsuTUI	ATCGAT	1 cut(s)	695
BtgI	CCRYGG	2 cut(s)	419, 903
BtgZI	GCGATG	1 cut(s)	226
BtsCI	GGATG	1 cut(s)	468
BtsI	GCAGTG	1 cut(s)	1206
BtsIMutI	CAGTG	3 cut(s)	735, 1116, 1206
BveI	ACCTGC	1 cut(s)	440
CaiI	CAGNNNCTG	2 cut(s)	632, 737
Cfr13I	GGNCC	3 cut(s)	57, 477, 536
ClaI	ATCGAT	1 cut(s)	695
Csp6I	GTAC	2 cut(s)	1024, 1185
CspCI	CAANNNNNGTGG	2 cut(s)	739, 774
CviAII	CATG	2 cut(s)	420, 611
CviQI	GTAC	2 cut(s)	1024, 1185
DdeI	CTNAG	3 cut(s)	321, 568, 1200
DpnI	GATC	6 cut(s)	5, 238, 288, 925, 1058, 1165
DpnII	GATC	6 cut(s)	3, 236, 286, 923, 1056, 1163
DraI	TTTAAA	1 cut(s)	838
Eam1104I	CTCTTC	3 cut(s)	93, 333, 449
EarI	CTCTTC	3 cut(s)	93, 333, 449
Eco130I	CCWWGG	2 cut(s)	419, 532
Eco31I	GGTCTC	1 cut(s)	44
Eco47I	GGWCC	3 cut(s)	57, 477, 536
Eco57I	CTGAAG	2 cut(s)	314, 759
Eco88I	CYCGRG	1 cut(s)	223
Eco91I	GGTNACC	1 cut(s)	941
EcoO65I	GGTNACC	1 cut(s)	941
EcoRII	CCWGG	2 cut(s)	937, 1041
EcoT14I	CCWWGG	2 cut(s)	419, 532
ErhI	CCWWGG	2 cut(s)	419, 532
Esp3I	CGTCTC	1 cut(s)	83
FaeI	CATG	2 cut(s)	423, 614
FaiI	YATR	9 cut(s)	421, 475, 564, 612, 713, 776, 862, 878, 948
FaqI	GGGAC	1 cut(s)	982
FatI	CATG	2 cut(s)	419, 610
FblI	GTMKAC	1 cut(s)	877
Fnu4HI	GCNGC	2 cut(s)	246, 729
FokI	GGATG	1 cut(s)	475
Fsp4HI	GCNGC	2 cut(s)	246, 729
FspBI	CTAG	2 cut(s)	131, 335
GluI	GCNGC	2 cut(s)	246, 729
GsuI	CTGGAG	1 cut(s)	140
HaeIII	GGCC	1 cut(s)	1205
HapII	CCGG	2 cut(s)	35, 55
Hin1II	CATG	2 cut(s)	423, 614
HincII	GTYRAC	1 cut(s)	65
HindII	GTYRAC	1 cut(s)	65
HindIII	AAGCTT	1 cut(s)	485
HpaII	CCGG	2 cut(s)	35, 55
HphI	GGTGA	6 cut(s)	88, 132, 305, 677, 1117, 1250
Hpy166II	GTNNAC	3 cut(s)	65, 606, 878
Hpy188I	TCNGA	4 cut(s)	262, 286, 705, 1152
Hpy188III	TCNNGA	8 cut(s)	157, 164, 223, 225, 272, 364, 768, 799
Hpy8I	GTNNAC	3 cut(s)	65, 606, 878
Hpy99I	CGWCG	1 cut(s)	1055
HpyAV	CCTTC	5 cut(s)	33, 121, 310, 914, 1198
HpyCH4III	ACNGT	2 cut(s)	866, 1120
HpyCH4IV	ACGT	3 cut(s)	786, 820, 980
HpyCH4V	TGCA	5 cut(s)	542, 731, 870, 959, 1211
HpyF10VI	GCNNNNNNNGC	1 cut(s)	831
HpyF3I	CTNAG	3 cut(s)	321, 568, 1200
HpySE526I	ACGT	3 cut(s)	786, 820, 980
Hsp92II	CATG	2 cut(s)	423, 614
KpnI	GGTACC	1 cut(s)	1188
Kzo9I	GATC	6 cut(s)	3, 236, 286, 923, 1056, 1163
LguI	GCTCTTC	2 cut(s)	93, 449
LmnI	GCTCC	1 cut(s)	770
Lsp1109I	GCAGC	1 cut(s)	715
LweI	GCATC	3 cut(s)	453, 879, 968
MaeI	CTAG	2 cut(s)	131, 335
MaeII	ACGT	3 cut(s)	786, 820, 980
MaeIII	GTNAC	4 cut(s)	94, 733, 782, 941
MalI	GATC	6 cut(s)	5, 238, 288, 925, 1058, 1165
MboI	GATC	6 cut(s)	3, 236, 286, 923, 1056, 1163
MflI	RGATCY	1 cut(s)	236
MluCI	AATT	1 cut(s)	751
MlyI	GAGTC	2 cut(s)	319, 1107
MnlI	CCTC	5 cut(s)	38, 53, 220, 1158, 1229
MseI	TTAA	2 cut(s)	483, 837
MslI	CAYNNNNRTG	1 cut(s)	740
MspI	CCGG	2 cut(s)	35, 55
MspR9I	CCNGG	4 cut(s)	36, 55, 939, 1043
Mva1269I	GAATGC	1 cut(s)	1159
MvaI	CCWGG	2 cut(s)	939, 1043
MwoI	GCNNNNNNNGC	1 cut(s)	831
NciI	CCSGG	2 cut(s)	36, 55
NcoI	CCATGG	1 cut(s)	419
NdeII	GATC	6 cut(s)	3, 236, 286, 923, 1056, 1163
NlaIII	CATG	2 cut(s)	423, 614
NlaIV	GGNNCC	2 cut(s)	936, 1186
NmuCI	GTSAC	2 cut(s)	94, 733
OliI	CACNNNNGTG	1 cut(s)	740
PaeR7I	CTCGAG	1 cut(s)	223
PciSI	GCTCTTC	2 cut(s)	93, 449
PcsI	WCGNNNNNNNCGW	2 cut(s)	282, 701
PctI	GAATGC	1 cut(s)	1159
PfeI	GAWTC	9 cut(s)	13, 145, 160, 206, 263, 668, 697, 856, 1135
PkrI	GCNGC	2 cut(s)	247, 730
PleI	GAGTC	2 cut(s)	319, 1106
PpsI	GAGTC	2 cut(s)	319, 1106
Psp1406I	AACGTT	2 cut(s)	786, 980
Psp6I	CCWGG	2 cut(s)	937, 1041
PspEI	GGTNACC	1 cut(s)	941
PspGI	CCWGG	2 cut(s)	937, 1041
PspN4I	GGNNCC	2 cut(s)	936, 1186
PspPI	GGNCC	3 cut(s)	57, 477, 536
PstI	CTGCAG	1 cut(s)	733
PstNI	CAGNNNCTG	2 cut(s)	632, 737
PsuI	RGATCY	1 cut(s)	236
RsaI	GTAC	2 cut(s)	1025, 1186
RsaNI	GTAC	2 cut(s)	1024, 1185
RseI	CAYNNNNRTG	1 cut(s)	740
SapI	GCTCTTC	2 cut(s)	93, 449
SaqAI	TTAA	2 cut(s)	483, 837
SatI	GCNGC	2 cut(s)	246, 729
Sau3AI	GATC	6 cut(s)	3, 236, 286, 923, 1056, 1163
Sau96I	GGNCC	3 cut(s)	57, 477, 536
SchI	GAGTC	2 cut(s)	319, 1107
ScrFI	CCNGG	4 cut(s)	36, 55, 939, 1043
SfaNI	GCATC	3 cut(s)	453, 879, 968
SfcI	CTRYAG	1 cut(s)	729
Sfr274I	CTCGAG	1 cut(s)	223
SinI	GGWCC	3 cut(s)	57, 477, 536
SlaI	CTCGAG	1 cut(s)	223
SmiMI	CAYNNNNRTG	1 cut(s)	740
SmlI	CTYRAG	2 cut(s)	223, 799
SmoI	CTYRAG	2 cut(s)	223, 799
Sse9I	AATT	1 cut(s)	751
SsiI	CCGC	3 cut(s)	174, 246, 299
SspMI	CTAG	2 cut(s)	131, 335
StyD4I	CCNGG	4 cut(s)	34, 53, 937, 1041
StyI	CCWWGG	2 cut(s)	419, 532
TaaI	ACNGT	2 cut(s)	866, 1120
TaiI	ACGT	3 cut(s)	789, 823, 983
TaqI	TCGA	3 cut(s)	224, 695, 1050
TasI	AATT	1 cut(s)	751
TatI	WGTACW	1 cut(s)	1023
TauI	GCSGC	1 cut(s)	248
TfiI	GAWTC	9 cut(s)	13, 145, 160, 206, 263, 668, 697, 856, 1135
Tru1I	TTAA	2 cut(s)	483, 837
Tru9I	TTAA	2 cut(s)	483, 837
TscAI	CASTG	3 cut(s)	742, 1123, 1213
TseFI	GTSAC	2 cut(s)	94, 733
TseI	GCWGC	1 cut(s)	728
Tsp45I	GTSAC	2 cut(s)	94, 733
TspDTI	ATGAA	1 cut(s)	1106
TspGWI	ACGGA	1 cut(s)	666
TspRI	CASTG	3 cut(s)	742, 1123, 1213
VpaK11BI	GGWCC	3 cut(s)	57, 477, 536
XhoI	CTCGAG	1 cut(s)	223
XmiI	GTMKAC	1 cut(s)	877
XspI	CTAG	2 cut(s)	131, 335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.