Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0002797

Physical Location & Seq

Genomic Coordinates Reverse (-)

17676196 .. 17676711

Gene Structure 516 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g15330.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGACGCATGCGAGGTTCAAATCCTCAGAGTCTGTTTTCTCGGTAGTGTTTTCGTCGTTCCTAGGAGATTCATACCCGTTACAGGTCTGGCTCTCAATTATCCCTATTGTAAAAGTAGATGGGTTGAATTTGTATGGTTGGATCAGTATAATTTCGTTCTTCTATATGTTTCCCGCCTCTATTTTCGTTGAAGGGTCTCAATGGGTTCAAGGATATCACAAAGCTCTTGCAGCTGTGGGAAAACCATGCACATTTCCCTTGACCTTTTCAATTGGGAACACAATGAAGAGAGTGGTGGTAATCGTATCGACCGTGTTGGTGTTCAGAAATCCAGTTAGACCTCTTAATGCTCTTGGATCCGCCATTGCAATTTCAGGGACTTTCTTGTATTCGCAGGCAACAGCTAAAAAGAAAAAGGGAGGTGAAAAGAAGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006820 GO:0008028 GO:0008150 GO:0008509 GO:0008514 GO:0008643 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0015075 GO:0015120 GO:0015144 GO:0015318 GO:0015605 GO:0015711 GO:0015713 GO:0015717 GO:0015718 GO:0015748 GO:0015849 GO:0022857 GO:0031967 GO:0031975 GO:0034219 GO:0034220 GO:0035436 GO:0042873 GO:0042879 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071917 GO:0098656 GO:1901264 GO:1901505 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

146

Amino Acids

15.95

Weight (kDa)

9.9

Isoelectric Point (pI)

35.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002797)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17630
fragaria_vesca	FvH4_7g07680
malus_domestica	MD02G1233400.v1.1 MD04G1135700.v1.1 MD04G1135800.v1.1 MD07G1080200.v1.1
prunus_persica	Prupe.2G104200_v2.0.a1
pyrus_communis	pycom02g20160 pycom07g06380 pycom12g15330
rosa_chinensis	RchiOBHm_Chr1g0342641 RchiOBHm_Chr2g0089941 RchiOBHm_Chr2g0137951 RchiOBHm_Chr5g0045131 RchiOBHm_Chr5g0045141
rosa_laevigata	RLG00000009883 RLG00000029167 RLG00000029185
rosa_multiflora	Rmu_sc0000539.1_g000061 Rmu_sc0005365.1_g000006 Rmu_sc0007318.1_g000001 Rmu_ssc0000177.1_g000005
rosa_roxburghii	Rroxscaffold_4G00313140 Rroxscaffold_6G00402970
rosa_rugosa	Rorug01G0146900.1 Rorug04G0068400 Rorug04G0068500 Rorug04G0068600 Rorug07G0164400 Rorug07G0164400
rosa_samantha	Rh1AG165200 Rh1AG191600 Rh1BG131300 Rh1CG153800 Rh1DG166400 Rh2BG401800 Rh5BG310600 Rh5DG321000
rosa_wichuraiana	Rw1G013710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	174, 360
AclWI	GGATC	3 cut(s)	149, 351, 364
AcsI	RAATTY	1 cut(s)	127
AfiI	CCNNNNNNNGG	1 cut(s)	82
AgsI	TTSAA	5 cut(s)	19, 127, 191, 209, 270
AluBI	AGCT	3 cut(s)	224, 233, 404
AluI	AGCT	3 cut(s)	224, 233, 404
Alw26I	GTCTC	1 cut(s)	201
AlwI	GGATC	3 cut(s)	149, 351, 364
AlwNI	CAGNNNCTG	1 cut(s)	32
ApeKI	GCWGC	1 cut(s)	230
ApoI	RAATTY	1 cut(s)	127
AspA2I	CCTAGG	1 cut(s)	61
AsuHPI	GGTGA	1 cut(s)	434
AvrII	CCTAGG	1 cut(s)	61
BamHI	GGATCC	1 cut(s)	356
BbvI	GCAGC	1 cut(s)	242
BccI	CCATC	1 cut(s)	113
BcoDI	GTCTC	1 cut(s)	201
BfaI	CTAG	1 cut(s)	62
BisI	GCNGC	1 cut(s)	231
BlnI	CCTAGG	1 cut(s)	61
BlsI	GCNGC	1 cut(s)	232
BmiI	GGNNCC	1 cut(s)	358
BsaI	GGTCTC	1 cut(s)	201
BsaJI	CCNNGG	1 cut(s)	61
Bsc4I	CCNNNNNNNGG	1 cut(s)	82
Bse1I	ACTGG	1 cut(s)	332
Bse3DI	GCAATG	1 cut(s)	363
BseDI	CCNNGG	1 cut(s)	61
BseLI	CCNNNNNNNGG	1 cut(s)	82
BseMI	GCAATG	1 cut(s)	363
BseMII	CTCAG	1 cut(s)	39
BseNI	ACTGG	1 cut(s)	332
BseXI	GCAGC	1 cut(s)	242
Bsh1285I	CGRYCG	1 cut(s)	312
BsiEI	CGRYCG	1 cut(s)	312
BslFI	GGGAC	1 cut(s)	391
BslI	CCNNNNNNNGG	1 cut(s)	82
BsmAI	GTCTC	1 cut(s)	201
BsmFI	GGGAC	1 cut(s)	391
Bso31I	GGTCTC	1 cut(s)	201
Bsp143I	GATC	2 cut(s)	141, 356
BspACI	CCGC	2 cut(s)	174, 360
BspCNI	CTCAG	1 cut(s)	38
BspLI	GGNNCC	1 cut(s)	358
BspPI	GGATC	3 cut(s)	149, 351, 364
BspTNI	GGTCTC	1 cut(s)	201
BsrDI	GCAATG	1 cut(s)	363
BsrI	ACTGG	1 cut(s)	332
BssECI	CCNNGG	1 cut(s)	61
BssMI	GATC	2 cut(s)	141, 356
BssT1I	CCWWGG	1 cut(s)	61
Bst4CI	ACNGT	1 cut(s)	313
Bst6I	CTCTTC	1 cut(s)	281
BstC8I	GCNNGC	2 cut(s)	9, 396
BstDEI	CTNAG	1 cut(s)	25
BstKTI	GATC	2 cut(s)	144, 359
BstMAI	GTCTC	1 cut(s)	201
BstMBI	GATC	2 cut(s)	141, 356
BstMCI	CGRYCG	1 cut(s)	312
BstMWI	GCNNNNNNNGC	1 cut(s)	230
BstNSI	RCATGY	1 cut(s)	11
BstV1I	GCAGC	1 cut(s)	242
BstX2I	RGATCY	1 cut(s)	356
BstYI	RGATCY	1 cut(s)	356
Cac8I	GCNNGC	2 cut(s)	9, 396
CaiI	CAGNNNCTG	1 cut(s)	32
CseI	GACGC	1 cut(s)	13
CviAII	CATG	2 cut(s)	8, 246
CviJI	RGCY	4 cut(s)	91, 224, 233, 404
CviKI_1	RGCY	4 cut(s)	91, 224, 233, 404
DdeI	CTNAG	1 cut(s)	25
DpnI	GATC	2 cut(s)	143, 358
DpnII	GATC	2 cut(s)	141, 356
Eam1104I	CTCTTC	1 cut(s)	281
EarI	CTCTTC	1 cut(s)	281
EciI	GGCGGA	1 cut(s)	349
Eco130I	CCWWGG	1 cut(s)	61
Eco31I	GGTCTC	1 cut(s)	201
Eco32I	GATATC	1 cut(s)	215
EcoRV	GATATC	1 cut(s)	215
EcoT14I	CCWWGG	1 cut(s)	61
ErhI	CCWWGG	1 cut(s)	61
FaeI	CATG	2 cut(s)	11, 249
FaiI	YATR	7 cut(s)	9, 73, 135, 149, 165, 167, 247
FaqI	GGGAC	1 cut(s)	391
FatI	CATG	2 cut(s)	7, 245
FauI	CCCGC	1 cut(s)	181
Fnu4HI	GCNGC	1 cut(s)	231
Fsp4HI	GCNGC	1 cut(s)	231
FspBI	CTAG	1 cut(s)	62
GluI	GCNGC	1 cut(s)	231
HgaI	GACGC	1 cut(s)	13
Hin1II	CATG	2 cut(s)	11, 249
HinfI	GANTC	2 cut(s)	29, 68
HphI	GGTGA	1 cut(s)	434
Hpy188I	TCNGA	2 cut(s)	28, 326
Hpy99I	CGWCG	1 cut(s)	58
HpyAV	CCTTC	2 cut(s)	185, 424
HpyCH4III	ACNGT	1 cut(s)	313
HpyCH4V	TGCA	3 cut(s)	230, 249, 368
HpyF10VI	GCNNNNNNNGC	1 cut(s)	230
HpyF3I	CTNAG	1 cut(s)	25
Hsp92II	CATG	2 cut(s)	11, 249
Kzo9I	GATC	2 cut(s)	141, 356
LpnPI	CCDG	5 cut(s)	68, 73, 345, 360, 380
Lsp1109I	GCAGC	1 cut(s)	242
MaeI	CTAG	1 cut(s)	62
MaeIII	GTNAC	1 cut(s)	78
MalI	GATC	2 cut(s)	143, 358
MboI	GATC	2 cut(s)	141, 356
MboII	GAAGA	2 cut(s)	151, 298
MfeI	CAATTG	1 cut(s)	270
MflI	RGATCY	1 cut(s)	356
MluCI	AATT	5 cut(s)	96, 127, 150, 270, 369
MlyI	GAGTC	1 cut(s)	38
MmeI	TCCRAC	1 cut(s)	119
MnlI	CCTC	5 cut(s)	6, 34, 187, 351, 413
MseI	TTAA	1 cut(s)	345
MspA1I	CMGCKG	1 cut(s)	233
MunI	CAATTG	1 cut(s)	270
MwoI	GCNNNNNNNGC	1 cut(s)	230
NdeII	GATC	2 cut(s)	141, 356
NlaIII	CATG	2 cut(s)	11, 249
NlaIV	GGNNCC	1 cut(s)	358
NspI	RCATGY	1 cut(s)	11
PaeI	GCATGC	1 cut(s)	11
PcsI	WCGNNNNNNNCGW	1 cut(s)	309
PfeI	GAWTC	1 cut(s)	68
PkrI	GCNGC	1 cut(s)	232
PleI	GAGTC	1 cut(s)	37
PpsI	GAGTC	1 cut(s)	37
PspN4I	GGNNCC	1 cut(s)	358
PstNI	CAGNNNCTG	1 cut(s)	32
PsuI	RGATCY	1 cut(s)	356
PvuII	CAGCTG	1 cut(s)	233
SaqAI	TTAA	1 cut(s)	345
SatI	GCNGC	1 cut(s)	231
Sau3AI	GATC	2 cut(s)	141, 356
SchI	GAGTC	1 cut(s)	38
SetI	ASST	8 cut(s)	17, 87, 226, 235, 266, 343, 406, 424
SphI	GCATGC	1 cut(s)	11
Sse9I	AATT	5 cut(s)	96, 127, 150, 270, 369
SsiI	CCGC	2 cut(s)	174, 360
SspMI	CTAG	1 cut(s)	62
StyI	CCWWGG	1 cut(s)	61
TaaI	ACNGT	1 cut(s)	313
TaqI	TCGA	1 cut(s)	308
TasI	AATT	5 cut(s)	96, 127, 150, 270, 369
TfiI	GAWTC	1 cut(s)	68
Tru1I	TTAA	1 cut(s)	345
Tru9I	TTAA	1 cut(s)	345
TseI	GCWGC	1 cut(s)	230
TspDTI	ATGAA	2 cut(s)	60, 299
XapI	RAATTY	1 cut(s)	127
XceI	RCATGY	1 cut(s)	11
XmaJI	CCTAGG	1 cut(s)	61
XspI	CTAG	1 cut(s)	62

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.