Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0002797

Physical Location & Seq

Genomic Coordinates Forward (+)

36496020 .. 36496973

Gene Structure 954 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG191600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGGTCCTTCCATCACTGTCACTTTCTCCAAATCCACCCATCACTACCCCATCAATGCCTCCCCCTCTTCTCTCCCCAACACAAGATTCCCCACCTCATCTGTTCTGCTCCATACACCCACCAAACCTTTCACCAGAATATATCTATGCCCACCCATTTGGATTCTCTTCAAAACCCACTTCCCAGATCCATGGTTTGAACCCAAAGTTCCCATCTTTGTTCTCCTCCAAACCCAGATCCCAAACCCCAAAAGCTTCTTCTGCTTCAAAAGCCAACCCCAATGGAGATATTGAACCCATAGTTCCAAAGCCTAAAGTCACAACCGACCAGCTTGCCTTGATCTTTGGGCTCTGGTACTTCCAGAACATTGTCTTCAATATCTACAATAAGAAGGCACTGAATGTTTTCCCATTCCCATGGCTTTTGGCTTCGTTTCAGCTCTTTGCCGGGTCCGTCTGGATGTTGATTCTGTGGTCTCTGAAGCTCCAGCCATGCCCGAAAATCTCGAAACCGTTCATTGTTGCTCTCCTTGGCCCTGCATTGTTCCACACCATAGGTCACATCTCGGCCTGCGTCTCATTCTCTAAGGTCGCTGTGTCCTTCACCCATGTCATCAAGTCTGCGGAGCCTGTCTTTTCGGTGATGTTTTCGTCGTTCCTAGGGGTGACTTACCCTATACAGGTCTGGCTTTCGATTCTTCCTATTGTTATGGGTTGTTCTTTAGCTGCTGTTACTGAGGTGACATTCAATTTGCAAGGCCTGTGGGGGGCTTTAATTAGCAATGTGGGGTTTGTGTTGAGGAATATTTATTTGAAGCGGAGCTTGCAGAGCTTTAAGGAAGTGGATGGGTTGAATTTGTATGGTTGGATCAGTATAATTTCGCTGTTTTATTTGTTTCCTGTGGCGGTTTTGGTTGAAGGGTCGCAATGGGTTCAAGGTATCATAGAGCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006820 GO:0008028 GO:0008150 GO:0008509 GO:0008514 GO:0008643 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0015075 GO:0015120 GO:0015144 GO:0015318 GO:0015605 GO:0015711 GO:0015713 GO:0015717 GO:0015718 GO:0015748 GO:0015849 GO:0022857 GO:0031967 GO:0031975 GO:0034219 GO:0034220 GO:0035436 GO:0042873 GO:0042879 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071917 GO:0098656 GO:1901264 GO:1901505 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

317

Amino Acids

34.94

Weight (kDa)

9.33

Isoelectric Point (pI)

56.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPT	PF03151	110 - 309	4.4e-75	Triose-phosphate Transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002797)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17630
fragaria_vesca	FvH4_7g07680
malus_domestica	MD02G1233400.v1.1 MD04G1135700.v1.1 MD04G1135800.v1.1 MD07G1080200.v1.1
prunus_persica	Prupe.2G104200_v2.0.a1
pyrus_communis	pycom02g20160 pycom07g06380 pycom12g15330
rosa_chinensis	RchiOBHm_Chr1g0342641 RchiOBHm_Chr2g0089941 RchiOBHm_Chr2g0137951 RchiOBHm_Chr5g0045131 RchiOBHm_Chr5g0045141
rosa_laevigata	RLG00000009883 RLG00000029167 RLG00000029185
rosa_multiflora	Rmu_sc0000539.1_g000061 Rmu_sc0005365.1_g000006 Rmu_sc0007318.1_g000001 Rmu_ssc0000177.1_g000005
rosa_roxburghii	Rroxscaffold_4G00313140 Rroxscaffold_6G00402970
rosa_rugosa	Rorug01G0146900.1 Rorug04G0068400 Rorug04G0068500 Rorug04G0068600 Rorug07G0164400 Rorug07G0164400
rosa_samantha	Rh1AG165200 Rh1AG191600 Rh1BG131300 Rh1CG153800 Rh1DG166400 Rh2BG401800 Rh5BG310600 Rh5DG321000
rosa_wichuraiana	Rw1G013710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	623, 817, 905
AclWI	GGATC	3 cut(s)	181, 231, 875
AcsI	RAATTY	1 cut(s)	853
AcuI	CTGAAG	1 cut(s)	500
AfaI	GTAC	1 cut(s)	356
AfiI	CCNNNNNNNGG	2 cut(s)	679, 766
AjuI	GAANNNNNNNTTGG	4 cut(s)	70, 102, 241, 273
AluBI	AGCT	8 cut(s)	254, 331, 439, 484, 725, 822, 831, 949
AluI	AGCT	8 cut(s)	254, 331, 439, 484, 725, 822, 831, 949
Alw26I	GTCTC	2 cut(s)	480, 580
AlwI	GGATC	3 cut(s)	181, 231, 875
AoxI	GGCC	3 cut(s)	532, 567, 757
ApeKI	GCWGC	1 cut(s)	725
ApoI	RAATTY	1 cut(s)	853
ArsI	GACNNNNNNTTYG	2 cut(s)	733, 765
Asp700I	GAANNNNTTC	2 cut(s)	404, 512
AspA2I	CCTAGG	1 cut(s)	658
AspS9I	GGNCC	3 cut(s)	4, 450, 533
AsuC2I	CCSGG	1 cut(s)	448
AsuHPI	GGTGA	5 cut(s)	123, 595, 652, 676, 751
AvaII	GGWCC	2 cut(s)	4, 450
AvrII	CCTAGG	1 cut(s)	658
BanII	GRGCYC	1 cut(s)	351
BbsI	GAAGAC	1 cut(s)	364
BbvI	GCAGC	1 cut(s)	712
BccI	CCATC	5 cut(s)	19, 47, 58, 220, 839
BcgI	CGANNNNNNTGC	2 cut(s)	314, 348
BcnI	CCSGG	1 cut(s)	448
BcoDI	GTCTC	2 cut(s)	480, 580
BfaI	CTAG	1 cut(s)	659
BfmI	CTRYAG	1 cut(s)	950
BisI	GCNGC	1 cut(s)	726
BlnI	CCTAGG	1 cut(s)	658
BlsI	GCNGC	1 cut(s)	727
Bme1390I	CCNGG	1 cut(s)	448
Bme18I	GGWCC	2 cut(s)	4, 450
BmgT120I	GGNCC	3 cut(s)	4, 450, 533
BmiI	GGNNCC	2 cut(s)	451, 627
BmrFI	CCNGG	1 cut(s)	448
BpiI	GAAGAC	1 cut(s)	364
BpmI	CTGGAG	1 cut(s)	470
BpuMI	CCSGG	1 cut(s)	448
BsaI	GGTCTC	1 cut(s)	480
BsaJI	CCNNGG	4 cut(s)	190, 416, 529, 658
Bsc4I	CCNNNNNNNGG	2 cut(s)	679, 766
Bse3DI	GCAATG	2 cut(s)	787, 932
BseDI	CCNNGG	4 cut(s)	190, 416, 529, 658
BseGI	GGATG	2 cut(s)	465, 850
BseLI	CCNNNNNNNGG	2 cut(s)	679, 766
BseMI	GCAATG	2 cut(s)	787, 932
BseMII	CTCAG	1 cut(s)	726
BseRI	GAGGAG	1 cut(s)	214
BseXI	GCAGC	1 cut(s)	712
BshFI	GGCC	3 cut(s)	534, 569, 759
BsiSI	CCGG	1 cut(s)	447
BslI	CCNNNNNNNGG	2 cut(s)	679, 766
BsmAI	GTCTC	2 cut(s)	480, 580
BsmBI	CGTCTC	1 cut(s)	580
BsnI	GGCC	3 cut(s)	534, 569, 759
Bso31I	GGTCTC	1 cut(s)	480
Bsp1286I	GDGCHC	1 cut(s)	351
Bsp143I	GATC	4 cut(s)	186, 236, 339, 867
Bsp19I	CCATGG	2 cut(s)	190, 416
BspACI	CCGC	3 cut(s)	623, 817, 905
BspANI	GGCC	3 cut(s)	534, 569, 759
BspCNI	CTCAG	1 cut(s)	727
BspLI	GGNNCC	2 cut(s)	451, 627
BspPI	GGATC	3 cut(s)	181, 231, 875
BspTNI	GGTCTC	1 cut(s)	480
BsrDI	GCAATG	2 cut(s)	787, 932
BssECI	CCNNGG	4 cut(s)	190, 416, 529, 658
BssMI	GATC	4 cut(s)	186, 236, 339, 867
BssT1I	CCWWGG	4 cut(s)	190, 416, 529, 658
Bst4CI	ACNGT	2 cut(s)	18, 513
Bst6I	CTCTTC	2 cut(s)	72, 172
BstC8I	GCNNGC	3 cut(s)	333, 571, 824
BstDEI	CTNAG	2 cut(s)	585, 735
BstDSI	CCRYGG	2 cut(s)	190, 416
BstF5I	GGATG	2 cut(s)	465, 850
BstKTI	GATC	4 cut(s)	189, 239, 342, 870
BstMAI	GTCTC	2 cut(s)	480, 580
BstMBI	GATC	4 cut(s)	186, 236, 339, 867
BstMWI	GCNNNNNNNGC	4 cut(s)	260, 269, 823, 828
BstSCI	CCNGG	1 cut(s)	446
BstSFI	CTRYAG	1 cut(s)	950
BstV1I	GCAGC	1 cut(s)	712
BstV2I	GAAGAC	1 cut(s)	364
BstX2I	RGATCY	2 cut(s)	186, 236
BstXI	CCANNNNNNTGG	3 cut(s)	158, 191, 417
BstYI	RGATCY	2 cut(s)	186, 236
BsuRI	GGCC	3 cut(s)	534, 569, 759
BtgI	CCRYGG	2 cut(s)	190, 416
BtsCI	GGATG	2 cut(s)	465, 850
BtsIMutI	CAGTG	2 cut(s)	14, 395
Cac8I	GCNNGC	3 cut(s)	333, 571, 824
Cfr13I	GGNCC	3 cut(s)	4, 450, 533
CseI	GACGC	1 cut(s)	562
Csp6I	GTAC	1 cut(s)	355
CspCI	CAANNNNNGTGG	2 cut(s)	743, 778
CviAII	CATG	4 cut(s)	191, 417, 492, 608
CviQI	GTAC	1 cut(s)	355
DdeI	CTNAG	2 cut(s)	585, 735
DpnI	GATC	4 cut(s)	188, 238, 341, 869
DpnII	GATC	4 cut(s)	186, 236, 339, 867
Eam1104I	CTCTTC	2 cut(s)	72, 172
EarI	CTCTTC	2 cut(s)	72, 172
Eco130I	CCWWGG	4 cut(s)	190, 416, 529, 658
Eco147I	AGGCCT	1 cut(s)	759
Eco24I	GRGCYC	1 cut(s)	351
Eco31I	GGTCTC	1 cut(s)	480
Eco47I	GGWCC	2 cut(s)	4, 450
Eco57I	CTGAAG	1 cut(s)	500
EcoT14I	CCWWGG	4 cut(s)	190, 416, 529, 658
EcoT38I	GRGCYC	1 cut(s)	351
ErhI	CCWWGG	4 cut(s)	190, 416, 529, 658
Esp3I	CGTCTC	1 cut(s)	580
FaeI	CATG	4 cut(s)	194, 420, 495, 611
FalI	AAGNNNNNCTT	2 cut(s)	806, 838
FatI	CATG	4 cut(s)	190, 416, 491, 607
Fnu4HI	GCNGC	1 cut(s)	726
FokI	GGATG	2 cut(s)	472, 857
FriOI	GRGCYC	1 cut(s)	351
Fsp4HI	GCNGC	1 cut(s)	726
FspBI	CTAG	1 cut(s)	659
GluI	GCNGC	1 cut(s)	726
GsuI	CTGGAG	1 cut(s)	470
HaeIII	GGCC	3 cut(s)	534, 569, 759
HapII	CCGG	1 cut(s)	447
HgaI	GACGC	1 cut(s)	562
Hin1II	CATG	4 cut(s)	194, 420, 495, 611
HindIII	AAGCTT	1 cut(s)	252
HinfI	GANTC	4 cut(s)	86, 162, 466, 694
HpaII	CCGG	1 cut(s)	447
HphI	GGTGA	5 cut(s)	123, 595, 652, 676, 751
Hpy188I	TCNGA	1 cut(s)	480
Hpy188III	TCNNGA	3 cut(s)	361, 457, 505
Hpy99I	CGWCG	1 cut(s)	655
HpyAV	CCTTC	4 cut(s)	17, 385, 610, 911
HpyCH4III	ACNGT	2 cut(s)	18, 513
HpyCH4V	TGCA	3 cut(s)	539, 754, 826
HpyF10VI	GCNNNNNNNGC	4 cut(s)	260, 269, 823, 828
HpyF3I	CTNAG	2 cut(s)	585, 735
Hsp92II	CATG	4 cut(s)	194, 420, 495, 611
Kzo9I	GATC	4 cut(s)	186, 236, 339, 867
LmnI	GCTCC	4 cut(s)	113, 489, 625, 819
Lsp1109I	GCAGC	1 cut(s)	712
MaeI	CTAG	1 cut(s)	659
MaeIII	GTNAC	6 cut(s)	18, 316, 557, 664, 730, 739
MalI	GATC	4 cut(s)	188, 238, 341, 869
MboI	GATC	4 cut(s)	186, 236, 339, 867
MboII	GAAGA	5 cut(s)	59, 159, 249, 364, 689
MflI	RGATCY	2 cut(s)	186, 236
MhlI	GDGCHC	1 cut(s)	351
MluCI	AATT	4 cut(s)	748, 774, 853, 876
MmeI	TCCRAC	1 cut(s)	845
MnlI	CCTC	6 cut(s)	69, 75, 105, 235, 730, 792
MroXI	GAANNNNTTC	2 cut(s)	404, 512
MseI	TTAA	2 cut(s)	773, 834
MslI	CAYNNNNRTG	1 cut(s)	415
MspI	CCGG	1 cut(s)	447
MspR9I	CCNGG	1 cut(s)	448
MwoI	GCNNNNNNNGC	4 cut(s)	260, 269, 823, 828
NciI	CCSGG	1 cut(s)	448
NcoI	CCATGG	2 cut(s)	190, 416
NdeII	GATC	4 cut(s)	186, 236, 339, 867
NlaIII	CATG	4 cut(s)	194, 420, 495, 611
NlaIV	GGNNCC	2 cut(s)	451, 627
NmeAIII	GCCGAG	1 cut(s)	545
NmuCI	GTSAC	5 cut(s)	18, 316, 557, 664, 739
PceI	AGGCCT	1 cut(s)	759
PdmI	GAANNNNTTC	2 cut(s)	404, 512
PfeI	GAWTC	4 cut(s)	86, 162, 466, 694
PkrI	GCNGC	1 cut(s)	727
PspN4I	GGNNCC	2 cut(s)	451, 627
PspPI	GGNCC	3 cut(s)	4, 450, 533
PsuI	RGATCY	2 cut(s)	186, 236
RsaI	GTAC	1 cut(s)	356
RsaNI	GTAC	1 cut(s)	355
RseI	CAYNNNNRTG	1 cut(s)	415
SaqAI	TTAA	2 cut(s)	773, 834
SatI	GCNGC	1 cut(s)	726
Sau3AI	GATC	4 cut(s)	186, 236, 339, 867
Sau96I	GGNCC	3 cut(s)	4, 450, 533
ScrFI	CCNGG	1 cut(s)	448
SduI	GDGCHC	1 cut(s)	351
SfcI	CTRYAG	1 cut(s)	950
SinI	GGWCC	2 cut(s)	4, 450
SmiMI	CAYNNNNRTG	1 cut(s)	415
Sse9I	AATT	4 cut(s)	748, 774, 853, 876
SseBI	AGGCCT	1 cut(s)	759
SsiI	CCGC	3 cut(s)	623, 817, 905
SspI	AATATT	1 cut(s)	805
SspMI	CTAG	1 cut(s)	659
StuI	AGGCCT	1 cut(s)	759
StyD4I	CCNGG	1 cut(s)	446
StyI	CCWWGG	4 cut(s)	190, 416, 529, 658
TaaI	ACNGT	2 cut(s)	18, 513
TaqI	TCGA	2 cut(s)	506, 692
TasI	AATT	4 cut(s)	748, 774, 853, 876
TfiI	GAWTC	4 cut(s)	86, 162, 466, 694
Tru1I	TTAA	2 cut(s)	773, 834
Tru9I	TTAA	2 cut(s)	773, 834
TscAI	CASTG	2 cut(s)	21, 402
TseFI	GTSAC	5 cut(s)	18, 316, 557, 664, 739
TseI	GCWGC	1 cut(s)	725
Tsp45I	GTSAC	5 cut(s)	18, 316, 557, 664, 739
TspDTI	ATGAA	1 cut(s)	505
TspGWI	ACGGA	1 cut(s)	442
TspRI	CASTG	2 cut(s)	21, 402
VpaK11BI	GGWCC	2 cut(s)	4, 450
XapI	RAATTY	1 cut(s)	853
XmaJI	CCTAGG	1 cut(s)	658
XmnI	GAANNNNTTC	2 cut(s)	404, 512
XspI	CTAG	1 cut(s)	659

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.