Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0002797

Physical Location & Seq

Genomic Coordinates Forward (+)

7554406 .. 7556582

Gene Structure 2177 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g07680.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1233 bp

ATGCTCACCCTGAATCTCAACACCACTGTCCCTTTCTCCAAATCCACCCATCACTTTTCCAACAACACAAGACTCCACACCTCATCATCTGCTCTGCTCCACATCCCCACCAAACCTTCAATCTTCACTAGAATCCATGTCCCCCCATACCCATTTGGCTTCTCTTCAAAACCCACTTTTCAGATCCACTGTTTGAACCCAAAGCTCCCATCTTTGTTCTCCTCCAAACCCAGATCCCAAACCTCCAAACCCAAAGCTGCTTCCTCTGATGCATCAGAACCCAACCCCACAGTTCCAAAGCCTAAGGCCACAACTCGCCAGCTTGCCCTCATTTTCGGGCTGTGGTACTTCCAGAACATTGTCTTCAACATCTTCAACAAGAAGGCACTCAATGTTTTCCCATTCCCATGGCTTCTGGCTTCGTTTCAGCTCTTTGCTGGGTCTGTCTGGATGTTGATTCTCTGGTCCCTCAAGCTCCAGCCGTGCCCGAAAATCTCGAAACCCTTCATTATTGCTCTCCTTGGCCCTGCATTGTTCCACACCATAGGCCACATTTCGGCCTGCGTCTCATTCTCTAAGGTGGCTGTGTCCTTCACCCATGTCATCAAGTCCTCGGAGCCTGTCTTCTCGGTGGTGTTTTCGTCTTTCCTAGGGGATACTTACCCTGTGCAGGTCTGGCTTTCGATTCTCCCTATTGTTATGGGTTGTTCTTTAGCTGCTGTTACTGAGGTGTCATTCAATTTGCAAGGCCTGTGGGGCGCTTTGATTAGCAATGTGGGGTTTGTGTTGAGGAACATTTACTCGAAACGGAGCTTGCAGAGCTTTAAGGAAGTGGATGGGTTGAATTTGTATGGTTGGATCAGTATAATTTCGCTCTTTTATCTGTTTCCTGTGGCGGTTTTCGTTGAAGGGCCGCAATGGGTTCAAGGGTATCATAGAGCTATTGCATCTGTTGGGAAACCATCCACATTTTACTTATGGGTGTTGTTGTCTGGAGTGTTTTACCATCTGTATAACCAGTCAAGTTATCAGGCTCTTGATGAGATTAGCCCTTTGACATTCTCAGTTGGGAATACAATGAAGAGGGTGGTGGTGATTGTGTCAACTGTGTTGGTTTTCAGAAATCCAGTTAGACCTCTTAATGCACTTGGTTCTGCTGTGGCGATATTTGGGACTTTCTTGTATTCTCAGGCAACAGCTAAGAAGAAAAAGGAAGCTGAAAAGAAGGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006820 GO:0008028 GO:0008150 GO:0008509 GO:0008514 GO:0008643 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0015075 GO:0015120 GO:0015144 GO:0015318 GO:0015605 GO:0015711 GO:0015713 GO:0015717 GO:0015718 GO:0015748 GO:0015849 GO:0022857 GO:0031967 GO:0031975 GO:0034219 GO:0034220 GO:0035436 GO:0042873 GO:0042879 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071917 GO:0098656 GO:1901264 GO:1901505 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

411

Amino Acids

45.59

Weight (kDa)

9.97

Isoelectric Point (pI)

48.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPT	PF03151	107 - 396	1.8e-114	Triose-phosphate Transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002797)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17630
fragaria_vesca	FvH4_7g07680
malus_domestica	MD02G1233400.v1.1 MD04G1135700.v1.1 MD04G1135800.v1.1 MD07G1080200.v1.1
prunus_persica	Prupe.2G104200_v2.0.a1
pyrus_communis	pycom02g20160 pycom07g06380 pycom12g15330
rosa_chinensis	RchiOBHm_Chr1g0342641 RchiOBHm_Chr2g0089941 RchiOBHm_Chr2g0137951 RchiOBHm_Chr5g0045131 RchiOBHm_Chr5g0045141
rosa_laevigata	RLG00000009883 RLG00000029167 RLG00000029185
rosa_multiflora	Rmu_sc0000539.1_g000061 Rmu_sc0005365.1_g000006 Rmu_sc0007318.1_g000001 Rmu_ssc0000177.1_g000005
rosa_roxburghii	Rroxscaffold_4G00313140 Rroxscaffold_6G00402970
rosa_rugosa	Rorug01G0146900.1 Rorug04G0068400 Rorug04G0068500 Rorug04G0068600 Rorug07G0164400 Rorug07G0164400
rosa_samantha	Rh1AG165200 Rh1AG191600 Rh1BG131300 Rh1CG153800 Rh1DG166400 Rh2BG401800 Rh5BG310600 Rh5DG321000
rosa_wichuraiana	Rw1G013710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	661
AciI	CCGC	2 cut(s)	896, 914
AclWI	GGATC	3 cut(s)	178, 228, 866
AcsI	RAATTY	1 cut(s)	844
AfaI	GTAC	1 cut(s)	347
AfiI	CCNNNNNNNGG	2 cut(s)	556, 670
AgsI	TTSAA	9 cut(s)	120, 168, 196, 367, 376, 739, 844, 908, 926
Alw26I	GTCTC	1 cut(s)	571
AlwI	GGATC	3 cut(s)	178, 228, 866
AoxI	GGCC	6 cut(s)	306, 523, 547, 558, 748, 911
ApeKI	GCWGC	2 cut(s)	257, 716
ApoI	RAATTY	1 cut(s)	844
Asp700I	GAANNNNTTC	1 cut(s)	503
AspA2I	CCTAGG	1 cut(s)	649
AspLEI	GCGC	1 cut(s)	761
AspS9I	GGNCC	3 cut(s)	465, 524, 911
AsuHPI	GGTGA	2 cut(s)	586, 1105
AvaII	GGWCC	1 cut(s)	465
AvrII	CCTAGG	1 cut(s)	649
AxyI	CCTNAGG	1 cut(s)	303
BaeGI	GKGCMC	1 cut(s)	488
BbsI	GAAGAC	2 cut(s)	355, 616
BbvI	GCAGC	2 cut(s)	244, 703
BccI	CCATC	5 cut(s)	57, 217, 830, 970, 1014
BceAI	ACGGC	1 cut(s)	466
BciVI	GTATCC	1 cut(s)	649
BcoDI	GTCTC	1 cut(s)	571
BfaI	CTAG	2 cut(s)	129, 650
BfoI	RGCGCY	1 cut(s)	762
BfuAI	ACCTGC	1 cut(s)	661
BfuI	GTATCC	1 cut(s)	649
BglI	GCCNNNNNGGC	1 cut(s)	756
BisI	GCNGC	3 cut(s)	258, 717, 914
BlnI	CCTAGG	1 cut(s)	649
BlsI	GCNGC	3 cut(s)	259, 718, 915
Bme18I	GGWCC	1 cut(s)	465
BmgT120I	GGNCC	3 cut(s)	465, 524, 911
BmiI	GGNNCC	2 cut(s)	467, 618
BmsI	GCATC	3 cut(s)	259, 281, 956
BpiI	GAAGAC	2 cut(s)	355, 616
BpmI	CTGGAG	2 cut(s)	461, 1014
BpuEI	CTTGAG	1 cut(s)	455
BsaJI	CCNNGG	4 cut(s)	407, 520, 612, 649
Bsc4I	CCNNNNNNNGG	2 cut(s)	556, 670
Bse1I	ACTGG	2 cut(s)	1018, 1127
Bse21I	CCTNAGG	1 cut(s)	303
Bse3DI	GCAATG	2 cut(s)	778, 923
BseDI	CCNNGG	4 cut(s)	407, 520, 612, 649
BseGI	GGATG	4 cut(s)	102, 456, 841, 962
BseLI	CCNNNNNNNGG	2 cut(s)	556, 670
BseMI	GCAATG	2 cut(s)	778, 923
BseMII	CTCAG	3 cut(s)	717, 1077, 1202
BseNI	ACTGG	2 cut(s)	1018, 1127
BseRI	GAGGAG	1 cut(s)	211
BseSI	GKGCMC	1 cut(s)	488
BseXI	GCAGC	2 cut(s)	244, 703
BseYI	CCCAGC	1 cut(s)	437
BsgI	GTGCAG	1 cut(s)	689
BshFI	GGCC	6 cut(s)	308, 525, 549, 560, 750, 913
BslFI	GGGAC	4 cut(s)	14, 125, 451, 1186
BslI	CCNNNNNNNGG	2 cut(s)	556, 670
BsmAI	GTCTC	1 cut(s)	571
BsmBI	CGTCTC	1 cut(s)	571
BsmFI	GGGAC	4 cut(s)	14, 125, 451, 1186
BsnI	GGCC	6 cut(s)	308, 525, 549, 560, 750, 913
Bsp1286I	GDGCHC	1 cut(s)	488
Bsp143I	GATC	3 cut(s)	183, 233, 858
Bsp19I	CCATGG	1 cut(s)	407
BspACI	CCGC	2 cut(s)	896, 914
BspANI	GGCC	6 cut(s)	308, 525, 549, 560, 750, 913
BspCNI	CTCAG	3 cut(s)	718, 1076, 1201
BspLI	GGNNCC	2 cut(s)	467, 618
BspMI	ACCTGC	1 cut(s)	661
BspPI	GGATC	3 cut(s)	178, 228, 866
BsrDI	GCAATG	2 cut(s)	778, 923
BsrI	ACTGG	2 cut(s)	1018, 1127
BssECI	CCNNGG	4 cut(s)	407, 520, 612, 649
BssMI	GATC	3 cut(s)	183, 233, 858
BssT1I	CCWWGG	3 cut(s)	407, 520, 649
Bst4CI	ACNGT	4 cut(s)	28, 191, 292, 1108
Bst6I	CTCTTC	2 cut(s)	169, 1076
BstC8I	GCNNGC	4 cut(s)	320, 324, 562, 815
BstDEI	CTNAG	6 cut(s)	303, 576, 726, 1063, 1188, 1200
BstDSI	CCRYGG	1 cut(s)	407
BstF5I	GGATG	4 cut(s)	102, 456, 841, 962
BstH2I	RGCGCY	1 cut(s)	762
BstHHI	GCGC	1 cut(s)	761
BstKTI	GATC	3 cut(s)	186, 236, 861
BstMAI	GTCTC	1 cut(s)	571
BstMBI	GATC	3 cut(s)	183, 233, 858
BstMWI	GCNNNNNNNGC	3 cut(s)	676, 756, 819
BstSLI	GKGCMC	1 cut(s)	488
BstV1I	GCAGC	2 cut(s)	244, 703
BstV2I	GAAGAC	2 cut(s)	355, 616
BstX2I	RGATCY	2 cut(s)	183, 233
BstXI	CCANNNNNNTGG	1 cut(s)	408
BstYI	RGATCY	2 cut(s)	183, 233
Bsu36I	CCTNAGG	1 cut(s)	303
BsuI	GTATCC	1 cut(s)	649
BsuRI	GGCC	6 cut(s)	308, 525, 549, 560, 750, 913
BtgI	CCRYGG	1 cut(s)	407
BtsCI	GGATG	4 cut(s)	102, 456, 841, 962
BtsIMutI	CAGTG	2 cut(s)	24, 187
BveI	ACCTGC	1 cut(s)	661
Cac8I	GCNNGC	4 cut(s)	320, 324, 562, 815
CfoI	GCGC	1 cut(s)	761
Cfr13I	GGNCC	3 cut(s)	465, 524, 911
CseI	GACGC	1 cut(s)	553
Csp6I	GTAC	1 cut(s)	346
CspCI	CAANNNNNGTGG	2 cut(s)	734, 769
CviAII	CATG	3 cut(s)	137, 408, 599
CviQI	GTAC	1 cut(s)	346
DdeI	CTNAG	6 cut(s)	303, 576, 726, 1063, 1188, 1200
DpnI	GATC	3 cut(s)	185, 235, 860
DpnII	GATC	3 cut(s)	183, 233, 858
Eam1104I	CTCTTC	2 cut(s)	169, 1076
EarI	CTCTTC	2 cut(s)	169, 1076
Eco130I	CCWWGG	3 cut(s)	407, 520, 649
Eco147I	AGGCCT	1 cut(s)	750
Eco47I	GGWCC	1 cut(s)	465
Eco81I	CCTNAGG	1 cut(s)	303
EcoT14I	CCWWGG	3 cut(s)	407, 520, 649
EcoT22I	ATGCAT	1 cut(s)	274
ErhI	CCWWGG	3 cut(s)	407, 520, 649
Esp3I	CGTCTC	1 cut(s)	571
FaeI	CATG	3 cut(s)	140, 411, 602
FaqI	GGGAC	4 cut(s)	14, 125, 451, 1186
FatI	CATG	3 cut(s)	136, 407, 598
Fnu4HI	GCNGC	3 cut(s)	258, 717, 914
FokI	GGATG	4 cut(s)	89, 463, 848, 949
Fsp4HI	GCNGC	3 cut(s)	258, 717, 914
FspBI	CTAG	2 cut(s)	129, 650
GlaI	GCGC	1 cut(s)	760
GluI	GCNGC	3 cut(s)	258, 717, 914
GsaI	CCCAGC	1 cut(s)	441
GsuI	CTGGAG	2 cut(s)	461, 1014
HaeII	RGCGCY	1 cut(s)	762
HaeIII	GGCC	6 cut(s)	308, 525, 549, 560, 750, 913
HgaI	GACGC	1 cut(s)	553
HhaI	GCGC	1 cut(s)	761
Hin1II	CATG	3 cut(s)	140, 411, 602
Hin6I	GCGC	1 cut(s)	759
HinP1I	GCGC	1 cut(s)	759
HincII	GTYRAC	1 cut(s)	1104
HindII	GTYRAC	1 cut(s)	1104
HinfI	GANTC	5 cut(s)	13, 72, 132, 457, 685
HphI	GGTGA	2 cut(s)	586, 1105
Hpy166II	GTNNAC	1 cut(s)	1104
Hpy188I	TCNGA	5 cut(s)	183, 268, 277, 616, 1121
Hpy188III	TCNNGA	5 cut(s)	352, 448, 496, 993, 1037
Hpy8I	GTNNAC	1 cut(s)	1104
HpyAV	CCTTC	6 cut(s)	126, 376, 514, 601, 902, 1219
HpyCH4III	ACNGT	4 cut(s)	28, 191, 292, 1108
HpyCH4V	TGCA	7 cut(s)	272, 530, 670, 745, 817, 947, 1145
HpyF10VI	GCNNNNNNNGC	3 cut(s)	676, 756, 819
HpyF3I	CTNAG	6 cut(s)	303, 576, 726, 1063, 1188, 1200
Hsp92II	CATG	3 cut(s)	140, 411, 602
HspAI	GCGC	1 cut(s)	759
Kzo9I	GATC	3 cut(s)	183, 233, 858
LmnI	GCTCC	5 cut(s)	102, 210, 480, 616, 810
Lsp1109I	GCAGC	2 cut(s)	244, 703
LweI	GCATC	3 cut(s)	259, 281, 956
MaeI	CTAG	2 cut(s)	129, 650
MaeIII	GTNAC	1 cut(s)	721
MalI	GATC	3 cut(s)	185, 235, 860
MboI	GATC	3 cut(s)	183, 233, 858
MboII	GAAGA	7 cut(s)	115, 156, 355, 364, 616, 1093, 1216
MflI	RGATCY	2 cut(s)	183, 233
MhlI	GDGCHC	1 cut(s)	488
MluCI	AATT	3 cut(s)	739, 844, 867
MlyI	GAGTC	1 cut(s)	66
MmeI	TCCRAC	2 cut(s)	84, 836
Mph1103I	ATGCAT	1 cut(s)	274
MroXI	GAANNNNTTC	1 cut(s)	503
MseI	TTAA	2 cut(s)	825, 1140
MslI	CAYNNNNRTG	1 cut(s)	406
MwoI	GCNNNNNNNGC	3 cut(s)	676, 756, 819
NcoI	CCATGG	1 cut(s)	407
NdeII	GATC	3 cut(s)	183, 233, 858
NlaIII	CATG	3 cut(s)	140, 411, 602
NlaIV	GGNNCC	2 cut(s)	467, 618
NsiI	ATGCAT	1 cut(s)	274
PceI	AGGCCT	1 cut(s)	750
PdmI	GAANNNNTTC	1 cut(s)	503
PfeI	GAWTC	4 cut(s)	13, 132, 457, 685
PkrI	GCNGC	3 cut(s)	259, 718, 915
PleI	GAGTC	1 cut(s)	66
PpsI	GAGTC	1 cut(s)	66
PspFI	CCCAGC	1 cut(s)	437
PspN4I	GGNNCC	2 cut(s)	467, 618
PspPI	GGNCC	3 cut(s)	465, 524, 911
PsuI	RGATCY	2 cut(s)	183, 233
RsaI	GTAC	1 cut(s)	347
RsaNI	GTAC	1 cut(s)	346
RseI	CAYNNNNRTG	1 cut(s)	406
SaqAI	TTAA	2 cut(s)	825, 1140
SatI	GCNGC	3 cut(s)	258, 717, 914
Sau3AI	GATC	3 cut(s)	183, 233, 858
Sau96I	GGNCC	3 cut(s)	465, 524, 911
SchI	GAGTC	1 cut(s)	66
SduI	GDGCHC	1 cut(s)	488
SfaNI	GCATC	3 cut(s)	259, 281, 956
SinI	GGWCC	1 cut(s)	465
SmiMI	CAYNNNNRTG	1 cut(s)	406
SmlI	CTYRAG	1 cut(s)	470
SmoI	CTYRAG	1 cut(s)	470
Sse9I	AATT	3 cut(s)	739, 844, 867
SseBI	AGGCCT	1 cut(s)	750
SsiI	CCGC	2 cut(s)	896, 914
SspMI	CTAG	2 cut(s)	129, 650
StuI	AGGCCT	1 cut(s)	750
StyI	CCWWGG	3 cut(s)	407, 520, 649
TaaI	ACNGT	4 cut(s)	28, 191, 292, 1108
TaqI	TCGA	3 cut(s)	497, 683, 803
TasI	AATT	3 cut(s)	739, 844, 867
TauI	GCSGC	1 cut(s)	916
TfiI	GAWTC	4 cut(s)	13, 132, 457, 685
Tru1I	TTAA	2 cut(s)	825, 1140
Tru9I	TTAA	2 cut(s)	825, 1140
TscAI	CASTG	2 cut(s)	31, 194
TseI	GCWGC	2 cut(s)	257, 716
TspDTI	ATGAA	2 cut(s)	496, 1094
TspGWI	ACGGA	1 cut(s)	823
TspRI	CASTG	2 cut(s)	31, 194
VpaK11BI	GGWCC	1 cut(s)	465
XapI	RAATTY	1 cut(s)	844
XmaJI	CCTAGG	1 cut(s)	649
XmnI	GAANNNNTTC	1 cut(s)	503
XspI	CTAG	2 cut(s)	129, 650
Zsp2I	ATGCAT	1 cut(s)	274

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.