Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0002797

Physical Location & Seq

Genomic Coordinates Reverse (-)

25422443 .. 25423754

Gene Structure 1312 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00402970.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGGCGGTCGAAATATTCAATAGTGGTGACCGCTTATCAGTTCCAAAGCCTAAAGTCACAACCGCCCAGCTTTCCTTAATCTTTGGGCTCTGGTACTTCCAGAACATTGTCTTCAATATCTACAACAAGAAGGCACTGAATGTTTTCCCATTCCCATGGCTTCTGGCTTCCTTTCAGCTCTTTGCCGGGTCTGTCTGGATGTTGATCCTCTGGTCTCTGAAGCTCCAGCCATGCCCGAAAATCTCGAAACCGTTCATTGTTGCTCTCCTTGGCCCTGCTTTGTTCCACACCATAGGCCACATCTCGGCCTGCGTCTCATTCTCTAAGGTGGCTGTGTCCTTCACCCATGTCATCAAGTCTGCGGAGCCTGTCTTTTCGATGGTGTTTTCGTCGTTCCTAGGGGAGACTTACCCTATACAGGTCTGGCTTTCGATTCTTCCTATTGTTATGGGTTGTTCTCTAGCTGCTGTTACTGAGGTGACATTCAATTTGCAAGGCCTGTGGGGGGCTTTAATTAGCAATGTGGGGTTTGTGTTGAGGAATATTTATTCGAAACGGAGCTTGCAGAGCTTTAAAGAAGTGGATGGGTTGAATTTGTATGGTTGCATCAGTATAATTTCTCTGTTTTATTTGTTTCCTGTGGCGGTTTTGGTTGAAGGGTCGCAATGGGTTCAAGGGTATCATAGAGCTATAGCATCTGTGGGGGAACCATCTACATTTTACTTTTGGGTGTTGTTGTCCGGAGTGTTTTACCATCTGTATAACCAGTCGAGTTATCAGGCTCTTGATGAGATTAGCCCTCTGACATTCTCAGTTGGAAACACAATGAAGAGGGTGGTGGTGATTGTGTCTACTGTGTTGGTGTTCAGAAATCCAGTTAGACCTCTTAATGCACTTGGGTCCGCTGTGGCGATATTTGGGACATTCTTGTATTCTCAGGCAACAGCTAAGAAGAAAAAGGAAGCTGAAAAGAAGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006820 GO:0008028 GO:0008150 GO:0008509 GO:0008514 GO:0008643 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0015075 GO:0015120 GO:0015144 GO:0015318 GO:0015605 GO:0015711 GO:0015713 GO:0015717 GO:0015718 GO:0015748 GO:0015849 GO:0022857 GO:0031967 GO:0031975 GO:0034219 GO:0034220 GO:0035436 GO:0042873 GO:0042879 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071917 GO:0098656 GO:1901264 GO:1901505 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

326

Amino Acids

36.27

Weight (kDa)

9.55

Isoelectric Point (pI)

44.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPT	PF03151	23 - 312	2e-114	Triose-phosphate Transporter family
EamA	PF00892	40 - 155	7.2e-06	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002797)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17630
fragaria_vesca	FvH4_7g07680
malus_domestica	MD02G1233400.v1.1 MD04G1135700.v1.1 MD04G1135800.v1.1 MD07G1080200.v1.1
prunus_persica	Prupe.2G104200_v2.0.a1
pyrus_communis	pycom02g20160 pycom07g06380 pycom12g15330
rosa_chinensis	RchiOBHm_Chr1g0342641 RchiOBHm_Chr2g0089941 RchiOBHm_Chr2g0137951 RchiOBHm_Chr5g0045131 RchiOBHm_Chr5g0045141
rosa_laevigata	RLG00000009883 RLG00000029167 RLG00000029185
rosa_multiflora	Rmu_sc0000539.1_g000061 Rmu_sc0005365.1_g000006 Rmu_sc0007318.1_g000001 Rmu_ssc0000177.1_g000005
rosa_roxburghii	Rroxscaffold_4G00313140 Rroxscaffold_6G00402970
rosa_rugosa	Rorug01G0146900.1 Rorug04G0068400 Rorug04G0068500 Rorug04G0068600 Rorug07G0164400 Rorug07G0164400
rosa_samantha	Rh1AG165200 Rh1AG191600 Rh1BG131300 Rh1CG153800 Rh1DG166400 Rh2BG401800 Rh5BG310600 Rh5DG321000
rosa_wichuraiana	Rw1G013710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	851
AccIII	TCCGGA	1 cut(s)	740
AciI	CCGC	6 cut(s)	5, 31, 63, 362, 644, 903
AclWI	GGATC	1 cut(s)	199
AcsI	RAATTY	1 cut(s)	592
AcuI	CTGAAG	1 cut(s)	239
AfaI	GTAC	1 cut(s)	95
AfiI	CCNNNNNNNGG	3 cut(s)	304, 418, 505
AgsI	TTSAA	6 cut(s)	19, 115, 487, 592, 656, 674
AluBI	AGCT	9 cut(s)	70, 178, 223, 464, 561, 570, 689, 947, 965
AluI	AGCT	9 cut(s)	70, 178, 223, 464, 561, 570, 689, 947, 965
Alw26I	GTCTC	3 cut(s)	219, 319, 398
AlwI	GGATC	1 cut(s)	199
Aor13HI	TCCGGA	1 cut(s)	740
AoxI	GGCC	4 cut(s)	271, 295, 306, 496
ApeKI	GCWGC	1 cut(s)	464
ApoI	RAATTY	1 cut(s)	592
ArsI	GACNNNNNNTTYG	2 cut(s)	472, 504
Asp700I	GAANNNNTTC	2 cut(s)	143, 251
AspA2I	CCTAGG	1 cut(s)	397
AspS9I	GGNCC	2 cut(s)	272, 900
AsuC2I	CCSGG	1 cut(s)	187
AsuHPI	GGTGA	4 cut(s)	38, 334, 490, 853
AsuII	TTCGAA	1 cut(s)	551
AvaII	GGWCC	1 cut(s)	900
AvrII	CCTAGG	1 cut(s)	397
BanII	GRGCYC	1 cut(s)	90
BbsI	GAAGAC	1 cut(s)	103
BbvI	GCAGC	1 cut(s)	451
BccI	CCATC	4 cut(s)	373, 578, 718, 762
BcnI	CCSGG	1 cut(s)	187
BcoDI	GTCTC	3 cut(s)	219, 319, 398
BfaI	CTAG	2 cut(s)	398, 461
BfmI	CTRYAG	1 cut(s)	690
BisI	GCNGC	1 cut(s)	465
BlnI	CCTAGG	1 cut(s)	397
BlsI	GCNGC	1 cut(s)	466
Bme1390I	CCNGG	1 cut(s)	187
Bme18I	GGWCC	1 cut(s)	900
BmgT120I	GGNCC	2 cut(s)	272, 900
BmiI	GGNNCC	3 cut(s)	366, 708, 901
BmrFI	CCNGG	1 cut(s)	187
BmsI	GCATC	2 cut(s)	615, 704
BpiI	GAAGAC	1 cut(s)	103
BpmI	CTGGAG	1 cut(s)	209
Bpu14I	TTCGAA	1 cut(s)	551
BpuMI	CCSGG	1 cut(s)	187
BsaBI	GATNNNNATC	1 cut(s)	203
BsaI	GGTCTC	1 cut(s)	219
BsaJI	CCNNGG	3 cut(s)	155, 268, 397
BsaWI	WCCGGW	1 cut(s)	740
Bsc4I	CCNNNNNNNGG	3 cut(s)	304, 418, 505
Bse1I	ACTGG	2 cut(s)	766, 875
Bse3DI	GCAATG	2 cut(s)	526, 671
Bse8I	GATNNNNATC	1 cut(s)	203
BseAI	TCCGGA	1 cut(s)	740
BseDI	CCNNGG	3 cut(s)	155, 268, 397
BseGI	GGATG	2 cut(s)	204, 589
BseJI	GATNNNNATC	1 cut(s)	203
BseLI	CCNNNNNNNGG	3 cut(s)	304, 418, 505
BseMI	GCAATG	2 cut(s)	526, 671
BseMII	CTCAG	3 cut(s)	465, 825, 950
BseNI	ACTGG	2 cut(s)	766, 875
BseXI	GCAGC	1 cut(s)	451
BseYI	CCCAGC	1 cut(s)	66
Bsh1285I	CGRYCG	1 cut(s)	9
BshFI	GGCC	4 cut(s)	273, 297, 308, 498
BsiEI	CGRYCG	1 cut(s)	9
BsiSI	CCGG	2 cut(s)	186, 741
BslFI	GGGAC	1 cut(s)	934
BslI	CCNNNNNNNGG	3 cut(s)	304, 418, 505
BsmAI	GTCTC	3 cut(s)	219, 319, 398
BsmBI	CGTCTC	1 cut(s)	319
BsmFI	GGGAC	1 cut(s)	934
BsnI	GGCC	4 cut(s)	273, 297, 308, 498
Bso31I	GGTCTC	1 cut(s)	219
Bsp119I	TTCGAA	1 cut(s)	551
Bsp1286I	GDGCHC	1 cut(s)	90
Bsp13I	TCCGGA	1 cut(s)	740
Bsp143I	GATC	1 cut(s)	204
Bsp19I	CCATGG	1 cut(s)	155
BspACI	CCGC	6 cut(s)	5, 31, 63, 362, 644, 903
BspANI	GGCC	4 cut(s)	273, 297, 308, 498
BspCNI	CTCAG	3 cut(s)	466, 824, 949
BspEI	TCCGGA	1 cut(s)	740
BspLI	GGNNCC	3 cut(s)	366, 708, 901
BspPI	GGATC	1 cut(s)	199
BspT104I	TTCGAA	1 cut(s)	551
BspTNI	GGTCTC	1 cut(s)	219
BsrDI	GCAATG	2 cut(s)	526, 671
BsrI	ACTGG	2 cut(s)	766, 875
BssECI	CCNNGG	3 cut(s)	155, 268, 397
BssMI	GATC	1 cut(s)	204
BssT1I	CCWWGG	3 cut(s)	155, 268, 397
Bst4CI	ACNGT	2 cut(s)	252, 856
Bst6I	CTCTTC	1 cut(s)	824
BstBI	TTCGAA	1 cut(s)	551
BstC8I	GCNNGC	2 cut(s)	310, 563
BstDEI	CTNAG	5 cut(s)	324, 474, 811, 936, 948
BstDSI	CCRYGG	1 cut(s)	155
BstEII	GGTNACC	1 cut(s)	26
BstF5I	GGATG	2 cut(s)	204, 589
BstKTI	GATC	1 cut(s)	207
BstMAI	GTCTC	3 cut(s)	219, 319, 398
BstMBI	GATC	1 cut(s)	204
BstMCI	CGRYCG	1 cut(s)	9
BstMWI	GCNNNNNNNGC	1 cut(s)	567
BstPI	GGTNACC	1 cut(s)	26
BstSCI	CCNGG	1 cut(s)	185
BstSFI	CTRYAG	1 cut(s)	690
BstV1I	GCAGC	1 cut(s)	451
BstV2I	GAAGAC	1 cut(s)	103
BstXI	CCANNNNNNTGG	1 cut(s)	156
BsuRI	GGCC	4 cut(s)	273, 297, 308, 498
BtgI	CCRYGG	1 cut(s)	155
BtsCI	GGATG	2 cut(s)	204, 589
BtsIMutI	CAGTG	1 cut(s)	134
Cac8I	GCNNGC	2 cut(s)	310, 563
Cfr13I	GGNCC	2 cut(s)	272, 900
CseI	GACGC	1 cut(s)	301
Csp6I	GTAC	1 cut(s)	94
CspCI	CAANNNNNGTGG	2 cut(s)	482, 517
CviAII	CATG	3 cut(s)	156, 231, 347
CviQI	GTAC	1 cut(s)	94
DdeI	CTNAG	5 cut(s)	324, 474, 811, 936, 948
DpnI	GATC	1 cut(s)	206
DpnII	GATC	1 cut(s)	204
DraI	TTTAAA	1 cut(s)	574
Eam1104I	CTCTTC	1 cut(s)	824
EarI	CTCTTC	1 cut(s)	824
Eco130I	CCWWGG	3 cut(s)	155, 268, 397
Eco147I	AGGCCT	1 cut(s)	498
Eco24I	GRGCYC	1 cut(s)	90
Eco31I	GGTCTC	1 cut(s)	219
Eco47I	GGWCC	1 cut(s)	900
Eco57I	CTGAAG	1 cut(s)	239
Eco91I	GGTNACC	1 cut(s)	26
EcoO65I	GGTNACC	1 cut(s)	26
EcoT14I	CCWWGG	3 cut(s)	155, 268, 397
EcoT38I	GRGCYC	1 cut(s)	90
ErhI	CCWWGG	3 cut(s)	155, 268, 397
Esp3I	CGTCTC	1 cut(s)	319
FaeI	CATG	3 cut(s)	159, 234, 350
FaqI	GGGAC	1 cut(s)	934
FatI	CATG	3 cut(s)	155, 230, 346
FblI	GTMKAC	1 cut(s)	851
Fnu4HI	GCNGC	1 cut(s)	465
FokI	GGATG	2 cut(s)	211, 596
FriOI	GRGCYC	1 cut(s)	90
Fsp4HI	GCNGC	1 cut(s)	465
FspBI	CTAG	2 cut(s)	398, 461
GluI	GCNGC	1 cut(s)	465
GsaI	CCCAGC	1 cut(s)	70
GsuI	CTGGAG	1 cut(s)	209
HaeIII	GGCC	4 cut(s)	273, 297, 308, 498
HapII	CCGG	2 cut(s)	186, 741
HgaI	GACGC	1 cut(s)	301
Hin1II	CATG	3 cut(s)	159, 234, 350
HinfI	GANTC	1 cut(s)	433
HpaII	CCGG	2 cut(s)	186, 741
HphI	GGTGA	4 cut(s)	38, 334, 490, 853
Hpy166II	GTNNAC	1 cut(s)	852
Hpy188I	TCNGA	3 cut(s)	219, 804, 869
Hpy188III	TCNNGA	5 cut(s)	100, 196, 244, 741, 785
Hpy8I	GTNNAC	1 cut(s)	852
Hpy99I	CGWCG	1 cut(s)	394
HpyAV	CCTTC	3 cut(s)	124, 349, 650
HpyCH4III	ACNGT	2 cut(s)	252, 856
HpyCH4V	TGCA	4 cut(s)	493, 565, 606, 893
HpyF10VI	GCNNNNNNNGC	1 cut(s)	567
HpyF3I	CTNAG	5 cut(s)	324, 474, 811, 936, 948
Hsp92II	CATG	3 cut(s)	159, 234, 350
Kpn2I	TCCGGA	1 cut(s)	740
Kzo9I	GATC	1 cut(s)	204
LmnI	GCTCC	3 cut(s)	228, 364, 558
Lsp1109I	GCAGC	1 cut(s)	451
LweI	GCATC	2 cut(s)	615, 704
MaeI	CTAG	2 cut(s)	398, 461
MaeIII	GTNAC	4 cut(s)	26, 55, 469, 478
MalI	GATC	1 cut(s)	206
MboI	GATC	1 cut(s)	204
MboII	GAAGA	4 cut(s)	103, 428, 841, 964
MhlI	GDGCHC	1 cut(s)	90
MluCI	AATT	5 cut(s)	487, 513, 592, 615, 976
MmeI	TCCRAC	1 cut(s)	796
MnlI	CCTC	6 cut(s)	218, 469, 531, 810, 825, 894
MroI	TCCGGA	1 cut(s)	740
MroXI	GAANNNNTTC	2 cut(s)	143, 251
MseI	TTAA	4 cut(s)	77, 512, 573, 888
MslI	CAYNNNNRTG	1 cut(s)	154
MspA1I	CMGCKG	1 cut(s)	905
MspI	CCGG	2 cut(s)	186, 741
MspR9I	CCNGG	1 cut(s)	187
MwoI	GCNNNNNNNGC	1 cut(s)	567
NciI	CCSGG	1 cut(s)	187
NcoI	CCATGG	1 cut(s)	155
NdeII	GATC	1 cut(s)	204
NlaIII	CATG	3 cut(s)	159, 234, 350
NlaIV	GGNNCC	3 cut(s)	366, 708, 901
NmeAIII	GCCGAG	1 cut(s)	284
NmuCI	GTSAC	3 cut(s)	26, 55, 478
NspV	TTCGAA	1 cut(s)	551
PceI	AGGCCT	1 cut(s)	498
PdmI	GAANNNNTTC	2 cut(s)	143, 251
PfeI	GAWTC	1 cut(s)	433
PkrI	GCNGC	1 cut(s)	466
PspEI	GGTNACC	1 cut(s)	26
PspFI	CCCAGC	1 cut(s)	66
PspN4I	GGNNCC	3 cut(s)	366, 708, 901
PspPI	GGNCC	2 cut(s)	272, 900
RsaI	GTAC	1 cut(s)	95
RsaNI	GTAC	1 cut(s)	94
RseI	CAYNNNNRTG	1 cut(s)	154
SaqAI	TTAA	4 cut(s)	77, 512, 573, 888
SatI	GCNGC	1 cut(s)	465
Sau3AI	GATC	1 cut(s)	204
Sau96I	GGNCC	2 cut(s)	272, 900
ScrFI	CCNGG	1 cut(s)	187
SduI	GDGCHC	1 cut(s)	90
SfaNI	GCATC	2 cut(s)	615, 704
SfcI	CTRYAG	1 cut(s)	690
SfuI	TTCGAA	1 cut(s)	551
SinI	GGWCC	1 cut(s)	900
SmiMI	CAYNNNNRTG	1 cut(s)	154
Sse9I	AATT	5 cut(s)	487, 513, 592, 615, 976
SseBI	AGGCCT	1 cut(s)	498
SsiI	CCGC	6 cut(s)	5, 31, 63, 362, 644, 903
SspI	AATATT	2 cut(s)	15, 544
SspMI	CTAG	2 cut(s)	398, 461
StuI	AGGCCT	1 cut(s)	498
StyD4I	CCNGG	1 cut(s)	185
StyI	CCWWGG	3 cut(s)	155, 268, 397
TaaI	ACNGT	2 cut(s)	252, 856
TaqI	TCGA	6 cut(s)	9, 245, 377, 431, 551, 770
TasI	AATT	5 cut(s)	487, 513, 592, 615, 976
TfiI	GAWTC	1 cut(s)	433
Tru1I	TTAA	4 cut(s)	77, 512, 573, 888
Tru9I	TTAA	4 cut(s)	77, 512, 573, 888
TscAI	CASTG	1 cut(s)	141
TseFI	GTSAC	3 cut(s)	26, 55, 478
TseI	GCWGC	1 cut(s)	464
Tsp45I	GTSAC	3 cut(s)	26, 55, 478
TspDTI	ATGAA	2 cut(s)	244, 842
TspGWI	ACGGA	1 cut(s)	571
TspRI	CASTG	1 cut(s)	141
VpaK11BI	GGWCC	1 cut(s)	900
XapI	RAATTY	1 cut(s)	592
XmaJI	CCTAGG	1 cut(s)	397
XmiI	GTMKAC	1 cut(s)	851
XmnI	GAANNNNTTC	2 cut(s)	143, 251
XspI	CTAG	2 cut(s)	398, 461

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.