Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002797

Physical Location & Seq

Genomic Coordinates Reverse (-)

3954861 .. 3968021

Gene Structure 13161 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ46522

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGCTTACCCTGAATCTCAACAGTCCTTCCATCACTGTCACTTTCTCCAAATCCACCCATCACTACCCCATCAATGCCTCCCCCTCTTCCCTCCCCAACACAAGATTCCCCACCTCATCTGCTCTGCTCCACACACCCACCAAGCGTTTCACCAGAATCTATGCCCACCCATTTGGATTCTCCTCAAAACCCACTTCCCAGATCCATGGTTTGAACCCAAAGTTCCCATCTTTCTTCTCCTCCAAACCCAGATCCCAAACCCCAAAAGCTTCTTCTGCATCAGAAGCCAACCCCAATGGAGATATTGAACCCACAGTTCCAAAGCCTAAAGTCACAACCGCCCAGCTTTCCTTAATCTTTGGGCTCTGGTACTTCCAGAACATTGTCTTCAATATCTACAACAAGAAGGCACTGAATGTTTTCCCATTCCCATGGCTTCTTTTTATGTGCACGTTTTTTATTACTTTCGTTTTTAAGTCTTTGGTTTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006820 GO:0008028 GO:0008150 GO:0008509 GO:0008514 GO:0008643 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0015075 GO:0015120 GO:0015144 GO:0015318 GO:0015605 GO:0015711 GO:0015713 GO:0015717 GO:0015718 GO:0015748 GO:0015849 GO:0022857 GO:0031967 GO:0031975 GO:0034219 GO:0034220 GO:0035436 GO:0042873 GO:0042879 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071917 GO:0098656 GO:1901264 GO:1901505 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

163

Amino Acids

18.32

Weight (kDa)

10.3

Isoelectric Point (pI)

56.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPT	PF03151	115 - 160	9.4e-10	Triose-phosphate Transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002797)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17630
fragaria_vesca	FvH4_7g07680
malus_domestica	MD02G1233400.v1.1 MD04G1135700.v1.1 MD04G1135800.v1.1 MD07G1080200.v1.1
prunus_persica	Prupe.2G104200_v2.0.a1
pyrus_communis	pycom02g20160 pycom07g06380 pycom12g15330
rosa_chinensis	RchiOBHm_Chr1g0342641 RchiOBHm_Chr2g0089941 RchiOBHm_Chr2g0137951 RchiOBHm_Chr5g0045131 RchiOBHm_Chr5g0045141
rosa_laevigata	RLG00000009883 RLG00000029167 RLG00000029185
rosa_multiflora	Rmu_sc0000539.1_g000061 Rmu_sc0005365.1_g000006 Rmu_sc0007318.1_g000001 Rmu_ssc0000177.1_g000005
rosa_roxburghii	Rroxscaffold_4G00313140 Rroxscaffold_6G00402970
rosa_rugosa	Rorug01G0146900.1 Rorug04G0068400 Rorug04G0068500 Rorug04G0068600 Rorug07G0164400 Rorug07G0164400
rosa_samantha	Rh1AG165200 Rh1AG191600 Rh1BG131300 Rh1CG153800 Rh1DG166400 Rh2BG401800 Rh5BG310600 Rh5DG321000
rosa_wichuraiana	Rw1G013710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	339
AclWI	GGATC	2 cut(s)	196, 246
AfaI	GTAC	1 cut(s)	371
AgsI	TTSAA	3 cut(s)	214, 308, 391
AjuI	GAANNNNNNNTTGG	4 cut(s)	89, 121, 256, 288
AluBI	AGCT	2 cut(s)	269, 346
AluI	AGCT	2 cut(s)	269, 346
Alw21I	GWGCWC	1 cut(s)	452
Alw44I	GTGCAC	1 cut(s)	448
AlwI	GGATC	2 cut(s)	196, 246
ApaLI	GTGCAC	1 cut(s)	448
Asp700I	GAANNNNTTC	1 cut(s)	419
AsuHPI	GGTGA	1 cut(s)	142
BaeGI	GKGCMC	1 cut(s)	452
BanII	GRGCYC	1 cut(s)	366
BbsI	GAAGAC	1 cut(s)	379
Bbv12I	GWGCWC	1 cut(s)	452
BccI	CCATC	4 cut(s)	38, 66, 77, 235
BmsI	GCATC	1 cut(s)	287
BpiI	GAAGAC	1 cut(s)	379
BsaJI	CCNNGG	2 cut(s)	205, 431
BseDI	CCNNGG	2 cut(s)	205, 431
BseRI	GAGGAG	2 cut(s)	172, 229
BseSI	GKGCMC	1 cut(s)	452
BseYI	CCCAGC	1 cut(s)	342
BsiHKAI	GWGCWC	1 cut(s)	452
Bsp1286I	GDGCHC	2 cut(s)	366, 452
Bsp143I	GATC	2 cut(s)	201, 251
Bsp19I	CCATGG	2 cut(s)	205, 431
BspACI	CCGC	1 cut(s)	339
BspPI	GGATC	2 cut(s)	196, 246
BssECI	CCNNGG	2 cut(s)	205, 431
BssMI	GATC	2 cut(s)	201, 251
BssT1I	CCWWGG	2 cut(s)	205, 431
Bst4CI	ACNGT	3 cut(s)	23, 37, 316
Bst6I	CTCTTC	1 cut(s)	91
BstDSI	CCRYGG	2 cut(s)	205, 431
BstKTI	GATC	2 cut(s)	204, 254
BstMBI	GATC	2 cut(s)	201, 251
BstMWI	GCNNNNNNNGC	2 cut(s)	275, 284
BstSLI	GKGCMC	1 cut(s)	452
BstV2I	GAAGAC	1 cut(s)	379
BstX2I	RGATCY	2 cut(s)	201, 251
BstXI	CCANNNNNNTGG	3 cut(s)	173, 206, 432
BstYI	RGATCY	2 cut(s)	201, 251
BtgI	CCRYGG	2 cut(s)	205, 431
BtsIMutI	CAGTG	2 cut(s)	33, 410
Csp6I	GTAC	1 cut(s)	370
CviAII	CATG	2 cut(s)	206, 432
CviJI	RGCY	6 cut(s)	269, 287, 325, 346, 364, 436
CviKI_1	RGCY	6 cut(s)	269, 287, 325, 346, 364, 436
CviQI	GTAC	1 cut(s)	370
DpnI	GATC	2 cut(s)	203, 253
DpnII	GATC	2 cut(s)	201, 251
Eam1104I	CTCTTC	1 cut(s)	91
EarI	CTCTTC	1 cut(s)	91
Eco130I	CCWWGG	2 cut(s)	205, 431
Eco24I	GRGCYC	1 cut(s)	366
EcoT14I	CCWWGG	2 cut(s)	205, 431
EcoT38I	GRGCYC	1 cut(s)	366
ErhI	CCWWGG	2 cut(s)	205, 431
FaeI	CATG	2 cut(s)	209, 435
FaiI	YATR	4 cut(s)	162, 207, 433, 446
FatI	CATG	2 cut(s)	205, 431
FriOI	GRGCYC	1 cut(s)	366
GsaI	CCCAGC	1 cut(s)	346
Hin1II	CATG	2 cut(s)	209, 435
HindIII	AAGCTT	1 cut(s)	267
HinfI	GANTC	4 cut(s)	13, 105, 156, 177
HphI	GGTGA	1 cut(s)	142
Hpy166II	GTNNAC	1 cut(s)	450
Hpy188I	TCNGA	1 cut(s)	283
Hpy188III	TCNNGA	1 cut(s)	376
Hpy8I	GTNNAC	1 cut(s)	450
HpyAV	CCTTC	2 cut(s)	36, 400
HpyCH4III	ACNGT	3 cut(s)	23, 37, 316
HpyCH4IV	ACGT	1 cut(s)	452
HpyCH4V	TGCA	2 cut(s)	278, 450
HpyF10VI	GCNNNNNNNGC	2 cut(s)	275, 284
HpySE526I	ACGT	1 cut(s)	452
Hsp92II	CATG	2 cut(s)	209, 435
Kzo9I	GATC	2 cut(s)	201, 251
LmnI	GCTCC	1 cut(s)	132
LpnPI	CCDG	7 cut(s)	23, 166, 212, 262, 352, 356, 389
LweI	GCATC	1 cut(s)	287
MaeII	ACGT	1 cut(s)	452
MaeIII	GTNAC	2 cut(s)	37, 331
MalI	GATC	2 cut(s)	203, 253
MboI	GATC	2 cut(s)	201, 251
MboII	GAAGA	4 cut(s)	78, 226, 264, 379
MflI	RGATCY	2 cut(s)	201, 251
MhlI	GDGCHC	2 cut(s)	366, 452
MnlI	CCTC	6 cut(s)	88, 94, 101, 124, 193, 250
MroXI	GAANNNNTTC	1 cut(s)	419
MseI	TTAA	2 cut(s)	353, 474
MslI	CAYNNNNRTG	1 cut(s)	430
MwoI	GCNNNNNNNGC	2 cut(s)	275, 284
NcoI	CCATGG	2 cut(s)	205, 431
NdeII	GATC	2 cut(s)	201, 251
NlaIII	CATG	2 cut(s)	209, 435
NmuCI	GTSAC	2 cut(s)	37, 331
PdmI	GAANNNNTTC	1 cut(s)	419
PfeI	GAWTC	4 cut(s)	13, 105, 156, 177
PspFI	CCCAGC	1 cut(s)	342
PsuI	RGATCY	2 cut(s)	201, 251
RsaI	GTAC	1 cut(s)	371
RsaNI	GTAC	1 cut(s)	370
RseI	CAYNNNNRTG	1 cut(s)	430
SaqAI	TTAA	2 cut(s)	353, 474
Sau3AI	GATC	2 cut(s)	201, 251
SduI	GDGCHC	2 cut(s)	366, 452
SetI	ASST	4 cut(s)	116, 271, 348, 455
SfaNI	GCATC	1 cut(s)	287
SmiMI	CAYNNNNRTG	1 cut(s)	430
SsiI	CCGC	1 cut(s)	339
StyI	CCWWGG	2 cut(s)	205, 431
TaaI	ACNGT	3 cut(s)	23, 37, 316
TaiI	ACGT	1 cut(s)	455
TfiI	GAWTC	4 cut(s)	13, 105, 156, 177
Tru1I	TTAA	2 cut(s)	353, 474
Tru9I	TTAA	2 cut(s)	353, 474
TscAI	CASTG	2 cut(s)	40, 417
TseFI	GTSAC	2 cut(s)	37, 331
Tsp45I	GTSAC	2 cut(s)	37, 331
TspRI	CASTG	2 cut(s)	40, 417
VneI	GTGCAC	1 cut(s)	448
XmnI	GAANNNNTTC	1 cut(s)	419

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.