Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0002797

Physical Location & Seq

Genomic Coordinates Reverse (-)

34191234 .. 34191767

Gene Structure 534 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029185

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGGGTTGTTCTCTAGCTGCTGTTACTGAGATCAGTATAATTTCGCTGTTTTATCTATTTCCTGTGGCGGTTTTGGTTGAAGGGTCGCAATGGGTTCAAGGGTATCATAGAGCTATTGCATCTGTGGGGAAACCATCCACATTTTCCTTATGGGTGTTGTTGTCTGGAGTGTTTTACCATCTGTATAACCAGTTGAGTTATCAGGGTCTAGATGAGATTAGCCCTTTGACATTCTCTGTTGGAAACACAATGAAGAGGGTGGTGGTGATTGTGTCTACTGTGTTGGTGTTCAGAAATCCAATTAGACCACTTAATGCACTTGGGTTTGCTGTGGCGATATTTGGGACATTCTTGTATTCGCAGGCAACAGCTAAGAAGAAAAAGGAAGCTGAAAAGAAGGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006820 GO:0008028 GO:0008150 GO:0008509 GO:0008514 GO:0008643 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0015075 GO:0015120 GO:0015144 GO:0015318 GO:0015605 GO:0015711 GO:0015713 GO:0015717 GO:0015718 GO:0015748 GO:0015849 GO:0022857 GO:0031967 GO:0031975 GO:0034219 GO:0034220 GO:0035436 GO:0042873 GO:0042879 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071917 GO:0098656 GO:1901264 GO:1901505 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

135

Amino Acids

14.77

Weight (kDa)

9.48

Isoelectric Point (pI)

32.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPT	PF03151	9 - 120	2.7e-37	Triose-phosphate Transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0002797)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17630
fragaria_vesca	FvH4_7g07680
malus_domestica	MD02G1233400.v1.1 MD04G1135700.v1.1 MD04G1135800.v1.1 MD07G1080200.v1.1
prunus_persica	Prupe.2G104200_v2.0.a1
pyrus_communis	pycom02g20160 pycom07g06380 pycom12g15330
rosa_chinensis	RchiOBHm_Chr1g0342641 RchiOBHm_Chr2g0089941 RchiOBHm_Chr2g0137951 RchiOBHm_Chr5g0045131 RchiOBHm_Chr5g0045141
rosa_laevigata	RLG00000009883 RLG00000029167 RLG00000029185
rosa_multiflora	Rmu_sc0000539.1_g000061 Rmu_sc0005365.1_g000006 Rmu_sc0007318.1_g000001 Rmu_ssc0000177.1_g000005
rosa_roxburghii	Rroxscaffold_4G00313140 Rroxscaffold_6G00402970
rosa_rugosa	Rorug01G0146900.1 Rorug04G0068400 Rorug04G0068500 Rorug04G0068600 Rorug07G0164400 Rorug07G0164400
rosa_samantha	Rh1AG165200 Rh1AG191600 Rh1BG131300 Rh1CG153800 Rh1DG166400 Rh2BG401800 Rh5BG310600 Rh5DG321000
rosa_wichuraiana	Rw1G013710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	275
AciI	CCGC	1 cut(s)	68
AgsI	TTSAA	2 cut(s)	80, 98
AluBI	AGCT	4 cut(s)	17, 113, 371, 389
AluI	AGCT	4 cut(s)	17, 113, 371, 389
ApeKI	GCWGC	1 cut(s)	17
AsuHPI	GGTGA	1 cut(s)	277
BbvI	GCAGC	1 cut(s)	4
BccI	CCATC	2 cut(s)	142, 186
BfaI	CTAG	2 cut(s)	14, 209
BisI	GCNGC	1 cut(s)	18
BlsI	GCNGC	1 cut(s)	19
BmsI	GCATC	1 cut(s)	128
BpmI	CTGGAG	1 cut(s)	186
Bse1I	ACTGG	1 cut(s)	190
Bse3DI	GCAATG	1 cut(s)	95
BseGI	GGATG	1 cut(s)	134
BseMI	GCAATG	1 cut(s)	95
BseMII	CTCAG	1 cut(s)	18
BseNI	ACTGG	1 cut(s)	190
BseXI	GCAGC	1 cut(s)	4
BslFI	GGGAC	1 cut(s)	358
BsmFI	GGGAC	1 cut(s)	358
Bsp143I	GATC	1 cut(s)	30
BspACI	CCGC	1 cut(s)	68
BspCNI	CTCAG	1 cut(s)	19
BsrDI	GCAATG	1 cut(s)	95
BsrI	ACTGG	1 cut(s)	190
BssMI	GATC	1 cut(s)	30
Bst4CI	ACNGT	1 cut(s)	280
Bst6I	CTCTTC	1 cut(s)	248
BstC8I	GCNNGC	1 cut(s)	363
BstDEI	CTNAG	2 cut(s)	27, 372
BstF5I	GGATG	1 cut(s)	134
BstKTI	GATC	1 cut(s)	33
BstMBI	GATC	1 cut(s)	30
BstV1I	GCAGC	1 cut(s)	4
BtsCI	GGATG	1 cut(s)	134
Cac8I	GCNNGC	1 cut(s)	363
CviJI	RGCY	5 cut(s)	17, 113, 222, 371, 389
CviKI_1	RGCY	5 cut(s)	17, 113, 222, 371, 389
DdeI	CTNAG	2 cut(s)	27, 372
DpnI	GATC	1 cut(s)	32
DpnII	GATC	1 cut(s)	30
Eam1104I	CTCTTC	1 cut(s)	248
EarI	CTCTTC	1 cut(s)	248
FaiI	YATR	4 cut(s)	38, 108, 151, 186
FaqI	GGGAC	1 cut(s)	358
FblI	GTMKAC	1 cut(s)	275
Fnu4HI	GCNGC	1 cut(s)	18
FokI	GGATG	1 cut(s)	121
Fsp4HI	GCNGC	1 cut(s)	18
FspBI	CTAG	2 cut(s)	14, 209
GluI	GCNGC	1 cut(s)	18
GsuI	CTGGAG	1 cut(s)	186
HphI	GGTGA	1 cut(s)	277
Hpy166II	GTNNAC	1 cut(s)	276
Hpy188I	TCNGA	1 cut(s)	293
Hpy188III	TCNNGA	2 cut(s)	165, 209
Hpy8I	GTNNAC	1 cut(s)	276
HpyAV	CCTTC	2 cut(s)	74, 391
HpyCH4III	ACNGT	1 cut(s)	280
HpyCH4V	TGCA	2 cut(s)	119, 317
HpyF3I	CTNAG	2 cut(s)	27, 372
Kzo9I	GATC	1 cut(s)	30
LpnPI	CCDG	5 cut(s)	75, 150, 188, 203, 347
Lsp1109I	GCAGC	1 cut(s)	4
LweI	GCATC	1 cut(s)	128
MaeI	CTAG	2 cut(s)	14, 209
MaeIII	GTNAC	1 cut(s)	22
MalI	GATC	1 cut(s)	32
MboI	GATC	1 cut(s)	30
MboII	GAAGA	2 cut(s)	265, 388
MluCI	AATT	2 cut(s)	39, 300
MmeI	TCCRAC	1 cut(s)	220
MnlI	CCTC	1 cut(s)	249
MseI	TTAA	1 cut(s)	312
NdeII	GATC	1 cut(s)	30
PkrI	GCNGC	1 cut(s)	19
SaqAI	TTAA	1 cut(s)	312
SatI	GCNGC	1 cut(s)	18
Sau3AI	GATC	1 cut(s)	30
SetI	ASST	4 cut(s)	19, 115, 373, 391
SfaNI	GCATC	1 cut(s)	128
Sse9I	AATT	2 cut(s)	39, 300
SsiI	CCGC	1 cut(s)	68
SspMI	CTAG	2 cut(s)	14, 209
TaaI	ACNGT	1 cut(s)	280
TasI	AATT	2 cut(s)	39, 300
Tru1I	TTAA	1 cut(s)	312
Tru9I	TTAA	1 cut(s)	312
TseI	GCWGC	1 cut(s)	17
TspDTI	ATGAA	1 cut(s)	266
XbaI	TCTAGA	1 cut(s)	208
XmiI	GTMKAC	1 cut(s)	275
XspI	CTAG	2 cut(s)	14, 209

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.