Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0002797

Physical Location & Seq

Genomic Coordinates Forward (+)

59523279 .. 59524009

Gene Structure 731 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009883

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGGCTTCTGGCTTCGTTTCAACTCTTTGCCGGGTCCGTCTGGATGTTGATTCTGTGGTCTCTGAAGCTCCAGCCATGCCCAAAAATCTTGAAATCGTTCATTGTTGCTCTCCTGGCCCTGCATTTTTCCACACCATAGGTCACATCTCGGCCTGCGTCTCATTCTCTAAGGTCGCTGTGTCCTTCACCCATGTCATCAAGTCTGCGGAGCCTGTCTTTTCGGTGGTGTTTTCGTCATTCCTAGGGGAGACTTACCCTATACAGGTCTGGCTTTCGATTCTTCCTATTGTTATGGGTTGTTCTTTAGCTGCTGTTACTGAGGTGACATTCAATTTGCAAGGCCTGTGGGGGGCTTTAATTAGCAATGTGGGGTTTGTGTTGAGGAATATTTATTCGAAGCGAAGCTTGCAGAGCTTTAAAGAAGTGGATGGGTTGAATTTGTATGGTTGGATCAGTATAATTTCGCTGTTTTATTTGTTTCCTGTGGCGGTTTTGGTTGAAGGGTCGCAATGGTCGAGTTATCAGGCTCTTGATGAGATTAGCCCATTGACATTTTCTCTTGGAAACACAATGAAGAGGGTGGTGGTGATTGTGTCGACTGTGTTGGCGAGGCTACACCGTTTTGAGGCTTTGCATCGCTCAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006820 GO:0008028 GO:0008150 GO:0008509 GO:0008514 GO:0008643 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0015075 GO:0015120 GO:0015144 GO:0015318 GO:0015605 GO:0015711 GO:0015713 GO:0015717 GO:0015718 GO:0015748 GO:0015849 GO:0022857 GO:0031967 GO:0031975 GO:0034219 GO:0034220 GO:0035436 GO:0042873 GO:0042879 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071917 GO:0098656 GO:1901264 GO:1901505 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

216

Amino Acids

23.6

Weight (kDa)

7.0

Isoelectric Point (pI)

48.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPT	PF03151	40 - 168	1.4e-50	Triose-phosphate Transporter family
TPT	PF03151	170 - 203	1.5e-08	Triose-phosphate Transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002797)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17630
fragaria_vesca	FvH4_7g07680
malus_domestica	MD02G1233400.v1.1 MD04G1135700.v1.1 MD04G1135800.v1.1 MD07G1080200.v1.1
prunus_persica	Prupe.2G104200_v2.0.a1
pyrus_communis	pycom02g20160 pycom07g06380 pycom12g15330
rosa_chinensis	RchiOBHm_Chr1g0342641 RchiOBHm_Chr2g0089941 RchiOBHm_Chr2g0137951 RchiOBHm_Chr5g0045131 RchiOBHm_Chr5g0045141
rosa_laevigata	RLG00000009883 RLG00000029167 RLG00000029185
rosa_multiflora	Rmu_sc0000539.1_g000061 Rmu_sc0005365.1_g000006 Rmu_sc0007318.1_g000001 Rmu_ssc0000177.1_g000005
rosa_roxburghii	Rroxscaffold_4G00313140 Rroxscaffold_6G00402970
rosa_rugosa	Rorug01G0146900.1 Rorug04G0068400 Rorug04G0068500 Rorug04G0068600 Rorug07G0164400 Rorug07G0164400
rosa_samantha	Rh1AG165200 Rh1AG191600 Rh1BG131300 Rh1CG153800 Rh1DG166400 Rh2BG401800 Rh5BG310600 Rh5DG321000
rosa_wichuraiana	Rw1G013710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	596
AciI	CCGC	2 cut(s)	206, 488
AclWI	GGATC	1 cut(s)	458
AcsI	RAATTY	1 cut(s)	436
AcuI	CTGAAG	1 cut(s)	84
AfiI	CCNNNNNNNGG	3 cut(s)	262, 349, 625
AgsI	TTSAA	5 cut(s)	21, 92, 331, 436, 500
AjnI	CCWGG	1 cut(s)	112
AluBI	AGCT	4 cut(s)	68, 308, 405, 414
AluI	AGCT	4 cut(s)	68, 308, 405, 414
Alw26I	GTCTC	3 cut(s)	64, 163, 242
AlwI	GGATC	1 cut(s)	458
AoxI	GGCC	3 cut(s)	115, 150, 340
ApeKI	GCWGC	1 cut(s)	308
ApoI	RAATTY	1 cut(s)	436
ArsI	GACNNNNNNTTYG	2 cut(s)	316, 348
Asp700I	GAANNNNTTC	1 cut(s)	96
AspA2I	CCTAGG	1 cut(s)	241
AspS9I	GGNCC	2 cut(s)	34, 116
AsuC2I	CCSGG	1 cut(s)	32
AsuHPI	GGTGA	3 cut(s)	178, 334, 598
AsuII	TTCGAA	1 cut(s)	395
AvaII	GGWCC	1 cut(s)	34
AvrII	CCTAGG	1 cut(s)	241
BbvI	GCAGC	1 cut(s)	295
BccI	CCATC	1 cut(s)	422
BciT130I	CCWGG	1 cut(s)	114
BcnI	CCSGG	1 cut(s)	32
BcoDI	GTCTC	3 cut(s)	64, 163, 242
BfaI	CTAG	1 cut(s)	242
BisI	GCNGC	1 cut(s)	309
BlnI	CCTAGG	1 cut(s)	241
BlsI	GCNGC	1 cut(s)	310
Bme1390I	CCNGG	2 cut(s)	32, 114
Bme18I	GGWCC	1 cut(s)	34
BmgT120I	GGNCC	2 cut(s)	34, 116
BmiI	GGNNCC	2 cut(s)	35, 210
BmrFI	CCNGG	2 cut(s)	32, 114
BmsI	GCATC	1 cut(s)	643
BpmI	CTGGAG	1 cut(s)	54
Bpu14I	TTCGAA	1 cut(s)	395
BpuMI	CCSGG	1 cut(s)	32
BsaI	GGTCTC	1 cut(s)	64
BsaJI	CCNNGG	1 cut(s)	241
Bsc4I	CCNNNNNNNGG	3 cut(s)	262, 349, 625
Bse3DI	GCAATG	2 cut(s)	370, 515
BseBI	CCWGG	1 cut(s)	114
BseDI	CCNNGG	1 cut(s)	241
BseGI	GGATG	2 cut(s)	49, 433
BseLI	CCNNNNNNNGG	3 cut(s)	262, 349, 625
BseMI	GCAATG	2 cut(s)	370, 515
BseMII	CTCAG	1 cut(s)	309
BseXI	GCAGC	1 cut(s)	295
BshFI	GGCC	3 cut(s)	117, 152, 342
BsiSI	CCGG	1 cut(s)	31
BslI	CCNNNNNNNGG	3 cut(s)	262, 349, 625
BsmAI	GTCTC	3 cut(s)	64, 163, 242
BsmBI	CGTCTC	1 cut(s)	163
BsnI	GGCC	3 cut(s)	117, 152, 342
Bso31I	GGTCTC	1 cut(s)	64
Bsp119I	TTCGAA	1 cut(s)	395
Bsp143I	GATC	1 cut(s)	450
BspACI	CCGC	2 cut(s)	206, 488
BspANI	GGCC	3 cut(s)	117, 152, 342
BspCNI	CTCAG	1 cut(s)	310
BspLI	GGNNCC	2 cut(s)	35, 210
BspPI	GGATC	1 cut(s)	458
BspT104I	TTCGAA	1 cut(s)	395
BspTNI	GGTCTC	1 cut(s)	64
BsrDI	GCAATG	2 cut(s)	370, 515
BssECI	CCNNGG	1 cut(s)	241
BssMI	GATC	1 cut(s)	450
BssT1I	CCWWGG	1 cut(s)	241
Bst2UI	CCWGG	1 cut(s)	114
Bst4CI	ACNGT	2 cut(s)	601, 620
Bst6I	CTCTTC	1 cut(s)	569
BstBI	TTCGAA	1 cut(s)	395
BstC8I	GCNNGC	2 cut(s)	154, 407
BstDEI	CTNAG	3 cut(s)	168, 318, 640
BstF5I	GGATG	2 cut(s)	49, 433
BstKTI	GATC	1 cut(s)	453
BstMAI	GTCTC	3 cut(s)	64, 163, 242
BstMBI	GATC	1 cut(s)	450
BstMWI	GCNNNNNNNGC	3 cut(s)	114, 406, 411
BstNI	CCWGG	1 cut(s)	114
BstSCI	CCNGG	2 cut(s)	30, 112
BstV1I	GCAGC	1 cut(s)	295
BsuRI	GGCC	3 cut(s)	117, 152, 342
BtgZI	GCGATG	1 cut(s)	620
BtsCI	GGATG	2 cut(s)	49, 433
Cac8I	GCNNGC	2 cut(s)	154, 407
Cfr13I	GGNCC	2 cut(s)	34, 116
CseI	GACGC	1 cut(s)	145
CspCI	CAANNNNNGTGG	2 cut(s)	326, 361
CviAII	CATG	2 cut(s)	76, 191
DdeI	CTNAG	3 cut(s)	168, 318, 640
DpnI	GATC	1 cut(s)	452
DpnII	GATC	1 cut(s)	450
DraI	TTTAAA	1 cut(s)	418
Eam1104I	CTCTTC	1 cut(s)	569
EarI	CTCTTC	1 cut(s)	569
Eco130I	CCWWGG	1 cut(s)	241
Eco147I	AGGCCT	1 cut(s)	342
Eco31I	GGTCTC	1 cut(s)	64
Eco47I	GGWCC	1 cut(s)	34
Eco57I	CTGAAG	1 cut(s)	84
EcoRII	CCWGG	1 cut(s)	112
EcoT14I	CCWWGG	1 cut(s)	241
ErhI	CCWWGG	1 cut(s)	241
Esp3I	CGTCTC	1 cut(s)	163
FaeI	CATG	2 cut(s)	79, 194
FaiI	YATR	7 cut(s)	77, 137, 192, 260, 293, 444, 458
FalI	AAGNNNNNCTT	2 cut(s)	389, 421
FatI	CATG	2 cut(s)	75, 190
FblI	GTMKAC	1 cut(s)	596
Fnu4HI	GCNGC	1 cut(s)	309
FokI	GGATG	2 cut(s)	56, 440
Fsp4HI	GCNGC	1 cut(s)	309
FspBI	CTAG	1 cut(s)	242
GluI	GCNGC	1 cut(s)	309
GsuI	CTGGAG	1 cut(s)	54
HaeIII	GGCC	3 cut(s)	117, 152, 342
HapII	CCGG	1 cut(s)	31
HgaI	GACGC	1 cut(s)	145
Hin1II	CATG	2 cut(s)	79, 194
HincII	GTYRAC	1 cut(s)	597
HindII	GTYRAC	1 cut(s)	597
HindIII	AAGCTT	1 cut(s)	403
HinfI	GANTC	2 cut(s)	50, 277
HpaII	CCGG	1 cut(s)	31
HphI	GGTGA	3 cut(s)	178, 334, 598
Hpy166II	GTNNAC	1 cut(s)	597
Hpy188I	TCNGA	2 cut(s)	64, 643
Hpy188III	TCNNGA	3 cut(s)	41, 89, 530
Hpy8I	GTNNAC	1 cut(s)	597
HpyAV	CCTTC	2 cut(s)	193, 494
HpyCH4III	ACNGT	2 cut(s)	601, 620
HpyCH4V	TGCA	4 cut(s)	122, 337, 409, 634
HpyF10VI	GCNNNNNNNGC	3 cut(s)	114, 406, 411
HpyF3I	CTNAG	3 cut(s)	168, 318, 640
Hsp92II	CATG	2 cut(s)	79, 194
Kzo9I	GATC	1 cut(s)	450
LmnI	GCTCC	2 cut(s)	73, 208
Lsp1109I	GCAGC	1 cut(s)	295
LweI	GCATC	1 cut(s)	643
MaeI	CTAG	1 cut(s)	242
MaeIII	GTNAC	3 cut(s)	140, 313, 322
MalI	GATC	1 cut(s)	452
MboI	GATC	1 cut(s)	450
MboII	GAAGA	2 cut(s)	272, 586
MluCI	AATT	4 cut(s)	331, 357, 436, 459
MmeI	TCCRAC	1 cut(s)	428
MnlI	CCTC	5 cut(s)	313, 375, 570, 603, 619
MroXI	GAANNNNTTC	1 cut(s)	96
MseI	TTAA	2 cut(s)	356, 417
MspI	CCGG	1 cut(s)	31
MspR9I	CCNGG	2 cut(s)	32, 114
MvaI	CCWGG	1 cut(s)	114
MwoI	GCNNNNNNNGC	3 cut(s)	114, 406, 411
NciI	CCSGG	1 cut(s)	32
NdeII	GATC	1 cut(s)	450
NlaIII	CATG	2 cut(s)	79, 194
NlaIV	GGNNCC	2 cut(s)	35, 210
NmeAIII	GCCGAG	1 cut(s)	128
NmuCI	GTSAC	2 cut(s)	140, 322
NspV	TTCGAA	1 cut(s)	395
PceI	AGGCCT	1 cut(s)	342
PcsI	WCGNNNNNNNCGW	1 cut(s)	512
PdmI	GAANNNNTTC	1 cut(s)	96
PfeI	GAWTC	2 cut(s)	50, 277
PkrI	GCNGC	1 cut(s)	310
Psp6I	CCWGG	1 cut(s)	112
PspGI	CCWGG	1 cut(s)	112
PspN4I	GGNNCC	2 cut(s)	35, 210
PspPI	GGNCC	2 cut(s)	34, 116
SalI	GTCGAC	1 cut(s)	595
SaqAI	TTAA	2 cut(s)	356, 417
SatI	GCNGC	1 cut(s)	309
Sau3AI	GATC	1 cut(s)	450
Sau96I	GGNCC	2 cut(s)	34, 116
ScrFI	CCNGG	2 cut(s)	32, 114
SetI	ASST	8 cut(s)	70, 142, 174, 267, 310, 324, 407, 416
SfaNI	GCATC	1 cut(s)	643
SfuI	TTCGAA	1 cut(s)	395
SinI	GGWCC	1 cut(s)	34
Sse9I	AATT	4 cut(s)	331, 357, 436, 459
SseBI	AGGCCT	1 cut(s)	342
SsiI	CCGC	2 cut(s)	206, 488
SspI	AATATT	1 cut(s)	388
SspMI	CTAG	1 cut(s)	242
StuI	AGGCCT	1 cut(s)	342
StyD4I	CCNGG	2 cut(s)	30, 112
StyI	CCWWGG	1 cut(s)	241
TaaI	ACNGT	2 cut(s)	601, 620
TaqI	TCGA	4 cut(s)	275, 395, 515, 596
TasI	AATT	4 cut(s)	331, 357, 436, 459
TfiI	GAWTC	2 cut(s)	50, 277
Tru1I	TTAA	2 cut(s)	356, 417
Tru9I	TTAA	2 cut(s)	356, 417
TseFI	GTSAC	2 cut(s)	140, 322
TseI	GCWGC	1 cut(s)	308
Tsp45I	GTSAC	2 cut(s)	140, 322
TspDTI	ATGAA	2 cut(s)	89, 587
TspGWI	ACGGA	1 cut(s)	26
VpaK11BI	GGWCC	1 cut(s)	34
XapI	RAATTY	1 cut(s)	436
XmaJI	CCTAGG	1 cut(s)	241
XmiI	GTMKAC	1 cut(s)	596
XmnI	GAANNNNTTC	1 cut(s)	96
XspI	CTAG	1 cut(s)	242

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.