Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0002797

Physical Location & Seq

Genomic Coordinates Forward (+)

22274587 .. 22274868

Gene Structure 282 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1135700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

ATGGGTTGTGCTCTAGTTGCTATCACTGAGCTGTCATTCAATGTGCAAGGCCTTTGGGGTGCTTTGATTAGCAATGTCAGGTTTGTGTTGAGGAACATTTACTCGAAACATAGTTTACAGAACTTCAAGGAAGTAGATGGGTTGAATTTGTATGGTTGGAACAATATAATTTATTTCTTCTATATGTTTCTCGCCGCTATTTTCGTTGAAGGGTCTCAATGGGTTCAAGGATATCACAAAGCTCTTGCAACTATGGGAAAACCATCCACATTGTACATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006820 GO:0008028 GO:0008150 GO:0008509 GO:0008514 GO:0008643 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0015075 GO:0015120 GO:0015144 GO:0015318 GO:0015605 GO:0015711 GO:0015713 GO:0015717 GO:0015718 GO:0015748 GO:0015849 GO:0022857 GO:0031967 GO:0031975 GO:0034219 GO:0034220 GO:0035436 GO:0042873 GO:0042879 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071917 GO:0098656 GO:1901264 GO:1901505 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

94

Amino Acids

10.6

Weight (kDa)

8.82

Isoelectric Point (pI)

38.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPT	PF03151	1 - 74	9.8e-18	Triose-phosphate Transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002797)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17630
fragaria_vesca	FvH4_7g07680
malus_domestica	MD02G1233400.v1.1 MD04G1135700.v1.1 MD04G1135800.v1.1 MD07G1080200.v1.1
prunus_persica	Prupe.2G104200_v2.0.a1
pyrus_communis	pycom02g20160 pycom07g06380 pycom12g15330
rosa_chinensis	RchiOBHm_Chr1g0342641 RchiOBHm_Chr2g0089941 RchiOBHm_Chr2g0137951 RchiOBHm_Chr5g0045131 RchiOBHm_Chr5g0045141
rosa_laevigata	RLG00000009883 RLG00000029167 RLG00000029185
rosa_multiflora	Rmu_sc0000539.1_g000061 Rmu_sc0005365.1_g000006 Rmu_sc0007318.1_g000001 Rmu_ssc0000177.1_g000005
rosa_roxburghii	Rroxscaffold_4G00313140 Rroxscaffold_6G00402970
rosa_rugosa	Rorug01G0146900.1 Rorug04G0068400 Rorug04G0068500 Rorug04G0068600 Rorug07G0164400 Rorug07G0164400
rosa_samantha	Rh1AG165200 Rh1AG191600 Rh1BG131300 Rh1CG153800 Rh1DG166400 Rh2BG401800 Rh5BG310600 Rh5DG321000
rosa_wichuraiana	Rw1G013710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	195
AcsI	RAATTY	1 cut(s)	145
AfaI	GTAC	1 cut(s)	275
AgsI	TTSAA	5 cut(s)	40, 127, 145, 209, 227
AluBI	AGCT	2 cut(s)	31, 242
AluI	AGCT	2 cut(s)	31, 242
Alw21I	GWGCWC	1 cut(s)	13
Alw26I	GTCTC	1 cut(s)	219
AoxI	GGCC	1 cut(s)	49
ApoI	RAATTY	1 cut(s)	145
Bbv12I	GWGCWC	1 cut(s)	13
BccI	CCATC	2 cut(s)	131, 271
BcoDI	GTCTC	1 cut(s)	219
BfaI	CTAG	1 cut(s)	14
BisI	GCNGC	1 cut(s)	195
BlsI	GCNGC	1 cut(s)	196
BsaI	GGTCTC	1 cut(s)	219
Bse3DI	GCAATG	1 cut(s)	79
BseGI	GGATG	1 cut(s)	263
BseMI	GCAATG	1 cut(s)	79
BseMII	CTCAG	1 cut(s)	18
BshFI	GGCC	1 cut(s)	51
BsiHKAI	GWGCWC	1 cut(s)	13
BsmAI	GTCTC	1 cut(s)	219
BsnI	GGCC	1 cut(s)	51
Bso31I	GGTCTC	1 cut(s)	219
Bsp1286I	GDGCHC	1 cut(s)	13
Bsp1407I	TGTACA	1 cut(s)	273
BspACI	CCGC	1 cut(s)	195
BspANI	GGCC	1 cut(s)	51
BspCNI	CTCAG	1 cut(s)	19
BspTNI	GGTCTC	1 cut(s)	219
BsrDI	GCAATG	1 cut(s)	79
BsrGI	TGTACA	1 cut(s)	273
BstAUI	TGTACA	1 cut(s)	273
BstDEI	CTNAG	1 cut(s)	27
BstF5I	GGATG	1 cut(s)	263
BstMAI	GTCTC	1 cut(s)	219
BstMWI	GCNNNNNNNGC	1 cut(s)	17
BsuRI	GGCC	1 cut(s)	51
BtsCI	GGATG	1 cut(s)	263
BtsIMutI	CAGTG	1 cut(s)	24
Csp6I	GTAC	1 cut(s)	274
CviJI	RGCY	3 cut(s)	31, 51, 242
CviKI_1	RGCY	3 cut(s)	31, 51, 242
CviQI	GTAC	1 cut(s)	274
DdeI	CTNAG	1 cut(s)	27
Eco147I	AGGCCT	1 cut(s)	51
Eco31I	GGTCTC	1 cut(s)	219
Eco32I	GATATC	1 cut(s)	233
EcoRV	GATATC	1 cut(s)	233
FaiI	YATR	8 cut(s)	111, 153, 167, 183, 185, 254, 278, 280
FauNDI	CATATG	1 cut(s)	278
Fnu4HI	GCNGC	1 cut(s)	195
FokI	GGATG	1 cut(s)	250
Fsp4HI	GCNGC	1 cut(s)	195
FspBI	CTAG	1 cut(s)	14
GluI	GCNGC	1 cut(s)	195
HaeIII	GGCC	1 cut(s)	51
Hpy166II	GTNNAC	1 cut(s)	116
Hpy8I	GTNNAC	1 cut(s)	116
HpyAV	CCTTC	1 cut(s)	203
HpyCH4V	TGCA	2 cut(s)	46, 248
HpyF10VI	GCNNNNNNNGC	1 cut(s)	17
HpyF3I	CTNAG	1 cut(s)	27
LpnPI	CCDG	1 cut(s)	64
MaeI	CTAG	1 cut(s)	14
MboII	GAAGA	1 cut(s)	169
MhlI	GDGCHC	1 cut(s)	13
MluCI	AATT	2 cut(s)	145, 168
MmeI	TCCRAC	1 cut(s)	137
MnlI	CCTC	1 cut(s)	84
MwoI	GCNNNNNNNGC	1 cut(s)	17
NdeI	CATATG	1 cut(s)	278
PceI	AGGCCT	1 cut(s)	51
PkrI	GCNGC	1 cut(s)	196
RsaI	GTAC	1 cut(s)	275
RsaNI	GTAC	1 cut(s)	274
SatI	GCNGC	1 cut(s)	195
SduI	GDGCHC	1 cut(s)	13
SetI	ASST	3 cut(s)	33, 83, 244
SgeI	CNNG	8 cut(s)	26, 59, 91, 115, 139, 203, 239, 257
Sse9I	AATT	2 cut(s)	145, 168
SseBI	AGGCCT	1 cut(s)	51
SsiI	CCGC	1 cut(s)	195
SspMI	CTAG	1 cut(s)	14
StuI	AGGCCT	1 cut(s)	51
TaqI	TCGA	1 cut(s)	104
TasI	AATT	2 cut(s)	145, 168
TatI	WGTACW	1 cut(s)	273
TauI	GCSGC	1 cut(s)	197
TscAI	CASTG	1 cut(s)	31
TspRI	CASTG	1 cut(s)	31
XapI	RAATTY	1 cut(s)	145
XspI	CTAG	1 cut(s)	14

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.