Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0002797

Physical Location & Seq

Genomic Coordinates Forward (+)

22023692 .. 22032552

Gene Structure 8861 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG131300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGCTTACCCTGAATCTCAACACTCCTTCCATCACTGTCACTTTCTCCAAATCCACCCATCACTACCCCATCAATGCCTCCCCCTCTTCTCTCCCCAACACAAGATTCCCCACCTCATCTGCTCTCCTCCACACACCCACCAAACCTTTCACCAGAATCCATGCCCACCCATTTGGATTCTCTTCAAAACCCACTTCCCAGATCCATGGTTTGAACCCAAAGTTCCCATCTTTGTTCTCCTCCAGACCCAGATCCCAAACCCCAAAAGCTTCTTCTGCTTCAGAAGCCAACCCCAATGGAGATATTGAACCCACAGTTCCAAAGCCTAAAGTCACAACCGCCCAGCTTTCCTTGATCTTTGGGCTCTGGTACTTCCAGAACATTGTCTTCAATATCTACAACAAGAAGGCACTGAATGTTTTCCCATTCCCATGGCTTCTGGCTTCGTTTCAGCTCTTTGCCGGGTCCGTCTGGATGTTGATCCTCTGGTCTCTGAAGCTCCAGCCATGCCCGAAAATCTCGAAACCGTTCATTGTTGCTCTCCTTGGCCCTGCATTGTTCCACACCATAGGCCACATCTCGGCCTGCGTCTCATTCTCTAAGGTCGCTGTGTCCTTCACCCATGTCATCAAGTCTGCGGAGCCTGTATTTTCGGTGGTGTTTTCGTCGTTCCTAGGGGAGACTTACCCCATACAGGTCTGGCTTTCGATTCTTCCTATTGTTATGGGTTGTTCTCTAGCTGCTGTTACTGAGGTGACATTCAATTTGCAAGGCCTGTGGGGGGCTTTAATTAGCAATGTGGGGTTTGTGTTGAGGAACATTTATTCGAAACGGAGCTTGCAGAGCTTTAAAGAAATAGATGGGTTGAATTTGAAATTTCTTCCTCCCTTTTCATTTTTCTCATCAGAAGTCAAGGTCATGGGGGAAATAAGGATCCTTTTCCTTTCTTCCACTTTTCTCTTGGATCATGTGCAAGAAATCTTTGTCATGAACTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006820 GO:0008028 GO:0008150 GO:0008509 GO:0008514 GO:0008643 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0015075 GO:0015120 GO:0015144 GO:0015318 GO:0015605 GO:0015711 GO:0015713 GO:0015717 GO:0015718 GO:0015748 GO:0015849 GO:0022857 GO:0031967 GO:0031975 GO:0034219 GO:0034220 GO:0035436 GO:0042873 GO:0042879 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071917 GO:0098656 GO:1901264 GO:1901505 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

332

Amino Acids

36.81

Weight (kDa)

9.83

Isoelectric Point (pI)

52.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPT	PF03151	115 - 292	1.5e-69	Triose-phosphate Transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002797)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17630
fragaria_vesca	FvH4_7g07680
malus_domestica	MD02G1233400.v1.1 MD04G1135700.v1.1 MD04G1135800.v1.1 MD07G1080200.v1.1
prunus_persica	Prupe.2G104200_v2.0.a1
pyrus_communis	pycom02g20160 pycom07g06380 pycom12g15330
rosa_chinensis	RchiOBHm_Chr1g0342641 RchiOBHm_Chr2g0089941 RchiOBHm_Chr2g0137951 RchiOBHm_Chr5g0045131 RchiOBHm_Chr5g0045141
rosa_laevigata	RLG00000009883 RLG00000029167 RLG00000029185
rosa_multiflora	Rmu_sc0000539.1_g000061 Rmu_sc0005365.1_g000006 Rmu_sc0007318.1_g000001 Rmu_ssc0000177.1_g000005
rosa_roxburghii	Rroxscaffold_4G00313140 Rroxscaffold_6G00402970
rosa_rugosa	Rorug01G0146900.1 Rorug04G0068400 Rorug04G0068500 Rorug04G0068600 Rorug07G0164400 Rorug07G0164400
rosa_samantha	Rh1AG165200 Rh1AG191600 Rh1BG131300 Rh1CG153800 Rh1DG166400 Rh2BG401800 Rh5BG310600 Rh5DG321000
rosa_wichuraiana	Rw1G013710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	339, 638
AclWI	GGATC	6 cut(s)	196, 246, 475, 928, 941, 972
AcsI	RAATTY	2 cut(s)	868, 875
AcuI	CTGAAG	2 cut(s)	264, 515
AfaI	GTAC	1 cut(s)	371
AfiI	CCNNNNNNNGG	3 cut(s)	580, 694, 781
AgsI	TTSAA	7 cut(s)	186, 214, 308, 391, 763, 868, 874
AjuI	GAANNNNNNNTTGG	4 cut(s)	89, 121, 256, 288
AluBI	AGCT	7 cut(s)	269, 346, 454, 499, 740, 837, 846
AluI	AGCT	7 cut(s)	269, 346, 454, 499, 740, 837, 846
Alw26I	GTCTC	3 cut(s)	495, 595, 674
AlwI	GGATC	6 cut(s)	196, 246, 475, 928, 941, 972
AoxI	GGCC	4 cut(s)	547, 571, 582, 772
ApeKI	GCWGC	1 cut(s)	740
ApoI	RAATTY	2 cut(s)	868, 875
ArsI	GACNNNNNNTTYG	2 cut(s)	748, 780
Asp700I	GAANNNNTTC	2 cut(s)	419, 527
AspA2I	CCTAGG	1 cut(s)	673
AspS9I	GGNCC	2 cut(s)	465, 548
AsuC2I	CCSGG	1 cut(s)	463
AsuHPI	GGTGA	3 cut(s)	142, 610, 766
AsuII	TTCGAA	1 cut(s)	827
AvaII	GGWCC	1 cut(s)	465
AvrII	CCTAGG	1 cut(s)	673
BamHI	GGATCC	1 cut(s)	933
BanII	GRGCYC	1 cut(s)	366
BbsI	GAAGAC	1 cut(s)	379
BbvI	GCAGC	1 cut(s)	727
BccI	CCATC	5 cut(s)	38, 66, 77, 235, 854
BcnI	CCSGG	1 cut(s)	463
BcoDI	GTCTC	3 cut(s)	495, 595, 674
BfaI	CTAG	2 cut(s)	674, 737
BisI	GCNGC	1 cut(s)	741
BlnI	CCTAGG	1 cut(s)	673
BlsI	GCNGC	1 cut(s)	742
Bme1390I	CCNGG	1 cut(s)	463
Bme18I	GGWCC	1 cut(s)	465
BmgT120I	GGNCC	2 cut(s)	465, 548
BmiI	GGNNCC	3 cut(s)	466, 642, 935
BmrFI	CCNGG	1 cut(s)	463
BpiI	GAAGAC	1 cut(s)	379
BpmI	CTGGAG	2 cut(s)	226, 485
Bpu14I	TTCGAA	1 cut(s)	827
BpuMI	CCSGG	1 cut(s)	463
BsaBI	GATNNNNATC	1 cut(s)	479
BsaI	GGTCTC	1 cut(s)	495
BsaJI	CCNNGG	4 cut(s)	205, 431, 544, 673
Bsc4I	CCNNNNNNNGG	3 cut(s)	580, 694, 781
Bse3DI	GCAATG	1 cut(s)	802
Bse8I	GATNNNNATC	1 cut(s)	479
BseDI	CCNNGG	4 cut(s)	205, 431, 544, 673
BseGI	GGATG	1 cut(s)	480
BseJI	GATNNNNATC	1 cut(s)	479
BseLI	CCNNNNNNNGG	3 cut(s)	580, 694, 781
BseMI	GCAATG	1 cut(s)	802
BseMII	CTCAG	1 cut(s)	741
BseRI	GAGGAG	2 cut(s)	116, 229
BseXI	GCAGC	1 cut(s)	727
BseYI	CCCAGC	1 cut(s)	342
BshFI	GGCC	4 cut(s)	549, 573, 584, 774
BsiSI	CCGG	1 cut(s)	462
BslI	CCNNNNNNNGG	3 cut(s)	580, 694, 781
BsmAI	GTCTC	3 cut(s)	495, 595, 674
BsmBI	CGTCTC	1 cut(s)	595
BsnI	GGCC	4 cut(s)	549, 573, 584, 774
Bso31I	GGTCTC	1 cut(s)	495
Bsp119I	TTCGAA	1 cut(s)	827
Bsp1286I	GDGCHC	1 cut(s)	366
Bsp143I	GATC	6 cut(s)	201, 251, 354, 480, 933, 964
Bsp19I	CCATGG	2 cut(s)	205, 431
BspACI	CCGC	2 cut(s)	339, 638
BspANI	GGCC	4 cut(s)	549, 573, 584, 774
BspCNI	CTCAG	1 cut(s)	742
BspHI	TCATGA	2 cut(s)	987, 995
BspLI	GGNNCC	3 cut(s)	466, 642, 935
BspPI	GGATC	6 cut(s)	196, 246, 475, 928, 941, 972
BspT104I	TTCGAA	1 cut(s)	827
BspTNI	GGTCTC	1 cut(s)	495
BsrDI	GCAATG	1 cut(s)	802
BssECI	CCNNGG	4 cut(s)	205, 431, 544, 673
BssMI	GATC	6 cut(s)	201, 251, 354, 480, 933, 964
BssT1I	CCWWGG	4 cut(s)	205, 431, 544, 673
Bst4CI	ACNGT	3 cut(s)	37, 316, 528
Bst6I	CTCTTC	2 cut(s)	91, 187
BstBI	TTCGAA	1 cut(s)	827
BstC8I	GCNNGC	2 cut(s)	586, 839
BstDEI	CTNAG	2 cut(s)	600, 750
BstDSI	CCRYGG	2 cut(s)	205, 431
BstF5I	GGATG	1 cut(s)	480
BstKTI	GATC	6 cut(s)	204, 254, 357, 483, 936, 967
BstMAI	GTCTC	3 cut(s)	495, 595, 674
BstMBI	GATC	6 cut(s)	201, 251, 354, 480, 933, 964
BstMWI	GCNNNNNNNGC	3 cut(s)	275, 284, 843
BstSCI	CCNGG	1 cut(s)	461
BstV1I	GCAGC	1 cut(s)	727
BstV2I	GAAGAC	1 cut(s)	379
BstX2I	RGATCY	3 cut(s)	201, 251, 933
BstXI	CCANNNNNNTGG	3 cut(s)	173, 206, 432
BstYI	RGATCY	3 cut(s)	201, 251, 933
BsuRI	GGCC	4 cut(s)	549, 573, 584, 774
BtgI	CCRYGG	2 cut(s)	205, 431
BtsCI	GGATG	1 cut(s)	480
BtsIMutI	CAGTG	2 cut(s)	33, 410
Cac8I	GCNNGC	2 cut(s)	586, 839
CciI	TCATGA	2 cut(s)	987, 995
Cfr13I	GGNCC	2 cut(s)	465, 548
CseI	GACGC	1 cut(s)	577
Csp6I	GTAC	1 cut(s)	370
CspCI	CAANNNNNGTGG	2 cut(s)	758, 793
CviAII	CATG	9 cut(s)	161, 206, 432, 507, 623, 919, 968, 988, 996
CviQI	GTAC	1 cut(s)	370
DdeI	CTNAG	2 cut(s)	600, 750
DpnI	GATC	6 cut(s)	203, 253, 356, 482, 935, 966
DpnII	GATC	6 cut(s)	201, 251, 354, 480, 933, 964
DraI	TTTAAA	1 cut(s)	850
Eam1104I	CTCTTC	2 cut(s)	91, 187
EarI	CTCTTC	2 cut(s)	91, 187
Eco130I	CCWWGG	4 cut(s)	205, 431, 544, 673
Eco147I	AGGCCT	1 cut(s)	774
Eco24I	GRGCYC	1 cut(s)	366
Eco31I	GGTCTC	1 cut(s)	495
Eco47I	GGWCC	1 cut(s)	465
Eco57I	CTGAAG	2 cut(s)	264, 515
EcoT14I	CCWWGG	4 cut(s)	205, 431, 544, 673
EcoT38I	GRGCYC	1 cut(s)	366
ErhI	CCWWGG	4 cut(s)	205, 431, 544, 673
Esp3I	CGTCTC	1 cut(s)	595
FaeI	CATG	9 cut(s)	164, 209, 435, 510, 626, 922, 971, 991, 999
FatI	CATG	9 cut(s)	160, 205, 431, 506, 622, 918, 967, 987, 995
Fnu4HI	GCNGC	1 cut(s)	741
FokI	GGATG	1 cut(s)	487
FriOI	GRGCYC	1 cut(s)	366
Fsp4HI	GCNGC	1 cut(s)	741
FspBI	CTAG	2 cut(s)	674, 737
GluI	GCNGC	1 cut(s)	741
GsaI	CCCAGC	1 cut(s)	346
GsuI	CTGGAG	2 cut(s)	226, 485
HaeIII	GGCC	4 cut(s)	549, 573, 584, 774
HapII	CCGG	1 cut(s)	462
HgaI	GACGC	1 cut(s)	577
Hin1II	CATG	9 cut(s)	164, 209, 435, 510, 626, 922, 971, 991, 999
HindIII	AAGCTT	1 cut(s)	267
HinfI	GANTC	5 cut(s)	13, 105, 156, 177, 709
HpaII	CCGG	1 cut(s)	462
HphI	GGTGA	3 cut(s)	142, 610, 766
Hpy188I	TCNGA	3 cut(s)	283, 495, 907
Hpy188III	TCNNGA	6 cut(s)	243, 376, 472, 520, 988, 996
Hpy99I	CGWCG	1 cut(s)	670
HpyAV	CCTTC	3 cut(s)	36, 400, 625
HpyCH4III	ACNGT	3 cut(s)	37, 316, 528
HpyCH4V	TGCA	4 cut(s)	554, 769, 841, 973
HpyF10VI	GCNNNNNNNGC	3 cut(s)	275, 284, 843
HpyF3I	CTNAG	2 cut(s)	600, 750
Hsp92II	CATG	9 cut(s)	164, 209, 435, 510, 626, 922, 971, 991, 999
Kzo9I	GATC	6 cut(s)	201, 251, 354, 480, 933, 964
LmnI	GCTCC	3 cut(s)	504, 640, 834
Lsp1109I	GCAGC	1 cut(s)	727
MaeI	CTAG	2 cut(s)	674, 737
MaeIII	GTNAC	4 cut(s)	37, 331, 745, 754
MalI	GATC	6 cut(s)	203, 253, 356, 482, 935, 966
MboI	GATC	6 cut(s)	201, 251, 354, 480, 933, 964
MboII	GAAGA	7 cut(s)	78, 174, 264, 379, 704, 872, 939
MflI	RGATCY	3 cut(s)	201, 251, 933
MhlI	GDGCHC	1 cut(s)	366
MluCI	AATT	4 cut(s)	763, 789, 868, 875
MnlI	CCTC	9 cut(s)	88, 94, 124, 137, 250, 494, 745, 807, 894
MroXI	GAANNNNTTC	2 cut(s)	419, 527
MseI	TTAA	2 cut(s)	788, 849
MslI	CAYNNNNRTG	1 cut(s)	430
MspI	CCGG	1 cut(s)	462
MspR9I	CCNGG	1 cut(s)	463
MwoI	GCNNNNNNNGC	3 cut(s)	275, 284, 843
NciI	CCSGG	1 cut(s)	463
NcoI	CCATGG	2 cut(s)	205, 431
NdeII	GATC	6 cut(s)	201, 251, 354, 480, 933, 964
NlaIII	CATG	9 cut(s)	164, 209, 435, 510, 626, 922, 971, 991, 999
NlaIV	GGNNCC	3 cut(s)	466, 642, 935
NmeAIII	GCCGAG	1 cut(s)	560
NmuCI	GTSAC	3 cut(s)	37, 331, 754
NspV	TTCGAA	1 cut(s)	827
PagI	TCATGA	2 cut(s)	987, 995
PceI	AGGCCT	1 cut(s)	774
PdmI	GAANNNNTTC	2 cut(s)	419, 527
PfeI	GAWTC	5 cut(s)	13, 105, 156, 177, 709
PkrI	GCNGC	1 cut(s)	742
PspFI	CCCAGC	1 cut(s)	342
PspN4I	GGNNCC	3 cut(s)	466, 642, 935
PspPI	GGNCC	2 cut(s)	465, 548
PsuI	RGATCY	3 cut(s)	201, 251, 933
RsaI	GTAC	1 cut(s)	371
RsaNI	GTAC	1 cut(s)	370
RseI	CAYNNNNRTG	1 cut(s)	430
SaqAI	TTAA	2 cut(s)	788, 849
SatI	GCNGC	1 cut(s)	741
Sau3AI	GATC	6 cut(s)	201, 251, 354, 480, 933, 964
Sau96I	GGNCC	2 cut(s)	465, 548
ScrFI	CCNGG	1 cut(s)	463
SduI	GDGCHC	1 cut(s)	366
SfuI	TTCGAA	1 cut(s)	827
SinI	GGWCC	1 cut(s)	465
SmiMI	CAYNNNNRTG	1 cut(s)	430
Sse9I	AATT	4 cut(s)	763, 789, 868, 875
SseBI	AGGCCT	1 cut(s)	774
SsiI	CCGC	2 cut(s)	339, 638
SspMI	CTAG	2 cut(s)	674, 737
StuI	AGGCCT	1 cut(s)	774
StyD4I	CCNGG	1 cut(s)	461
StyI	CCWWGG	4 cut(s)	205, 431, 544, 673
TaaI	ACNGT	3 cut(s)	37, 316, 528
TaqI	TCGA	3 cut(s)	521, 707, 827
TasI	AATT	4 cut(s)	763, 789, 868, 875
TfiI	GAWTC	5 cut(s)	13, 105, 156, 177, 709
Tru1I	TTAA	2 cut(s)	788, 849
Tru9I	TTAA	2 cut(s)	788, 849
TscAI	CASTG	2 cut(s)	40, 417
TseFI	GTSAC	3 cut(s)	37, 331, 754
TseI	GCWGC	1 cut(s)	740
Tsp45I	GTSAC	3 cut(s)	37, 331, 754
TspDTI	ATGAA	2 cut(s)	520, 882
TspGWI	ACGGA	2 cut(s)	457, 847
TspRI	CASTG	2 cut(s)	40, 417
VpaK11BI	GGWCC	1 cut(s)	465
XapI	RAATTY	2 cut(s)	868, 875
XcmI	CCANNNNNNNNNTGG	1 cut(s)	958
XmaJI	CCTAGG	1 cut(s)	673
XmnI	GAANNNNTTC	2 cut(s)	419, 527
XspI	CTAG	2 cut(s)	674, 737

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.