Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002797

Physical Location & Seq

Genomic Coordinates Forward (+)

40868245 .. 40868540

Gene Structure 296 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ32326

Sequence Viewer

CDS Protein Promoter (2k)

Length: 156 bp

ATGAAGAGGGTGGTGGTGATTGTGTCTACTGTGTTGGTGTTCAGAAATCCAGTTAGACCTCTTAATGCACTTGGGTCCGCTGTGGCGATATTTGGGACATTCTTGTATTCTCAGGCAACAGCTAAGAAGAAAAAGGAAGCTGAAAAGAAGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006820 GO:0008028 GO:0008150 GO:0008509 GO:0008514 GO:0008643 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0015075 GO:0015120 GO:0015144 GO:0015318 GO:0015605 GO:0015711 GO:0015713 GO:0015717 GO:0015718 GO:0015748 GO:0015849 GO:0022857 GO:0031967 GO:0031975 GO:0034219 GO:0034220 GO:0035436 GO:0042873 GO:0042879 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071917 GO:0098656 GO:1901264 GO:1901505 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

51

Amino Acids

5.62

Weight (kDa)

10.77

Isoelectric Point (pI)

28.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPT	PF03151	1 - 37	9e-14	Triose-phosphate Transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002797)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17630
fragaria_vesca	FvH4_7g07680
malus_domestica	MD02G1233400.v1.1 MD04G1135700.v1.1 MD04G1135800.v1.1 MD07G1080200.v1.1
prunus_persica	Prupe.2G104200_v2.0.a1
pyrus_communis	pycom02g20160 pycom07g06380 pycom12g15330
rosa_chinensis	RchiOBHm_Chr1g0342641 RchiOBHm_Chr2g0089941 RchiOBHm_Chr2g0137951 RchiOBHm_Chr5g0045131 RchiOBHm_Chr5g0045141
rosa_laevigata	RLG00000009883 RLG00000029167 RLG00000029185
rosa_multiflora	Rmu_sc0000539.1_g000061 Rmu_sc0005365.1_g000006 Rmu_sc0007318.1_g000001 Rmu_ssc0000177.1_g000005
rosa_roxburghii	Rroxscaffold_4G00313140 Rroxscaffold_6G00402970
rosa_rugosa	Rorug01G0146900.1 Rorug04G0068400 Rorug04G0068500 Rorug04G0068600 Rorug07G0164400 Rorug07G0164400
rosa_samantha	Rh1AG165200 Rh1AG191600 Rh1BG131300 Rh1CG153800 Rh1DG166400 Rh2BG401800 Rh5BG310600 Rh5DG321000
rosa_wichuraiana	Rw1G013710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	26
AciI	CCGC	1 cut(s)	78
AluBI	AGCT	2 cut(s)	122, 140
AluI	AGCT	2 cut(s)	122, 140
AspS9I	GGNCC	1 cut(s)	75
AsuHPI	GGTGA	1 cut(s)	28
AvaII	GGWCC	1 cut(s)	75
Bme18I	GGWCC	1 cut(s)	75
BmgT120I	GGNCC	1 cut(s)	75
BmiI	GGNNCC	1 cut(s)	76
Bse1I	ACTGG	1 cut(s)	50
BseMII	CTCAG	1 cut(s)	125
BseNI	ACTGG	1 cut(s)	50
BslFI	GGGAC	1 cut(s)	109
BsmFI	GGGAC	1 cut(s)	109
BspACI	CCGC	1 cut(s)	78
BspCNI	CTCAG	1 cut(s)	124
BspLI	GGNNCC	1 cut(s)	76
BsrI	ACTGG	1 cut(s)	50
Bst4CI	ACNGT	1 cut(s)	31
BstDEI	CTNAG	2 cut(s)	111, 123
Cfr13I	GGNCC	1 cut(s)	75
CviJI	RGCY	2 cut(s)	122, 140
CviKI_1	RGCY	2 cut(s)	122, 140
DdeI	CTNAG	2 cut(s)	111, 123
Eco47I	GGWCC	1 cut(s)	75
FaqI	GGGAC	1 cut(s)	109
FblI	GTMKAC	1 cut(s)	26
HphI	GGTGA	1 cut(s)	28
Hpy166II	GTNNAC	1 cut(s)	27
Hpy188I	TCNGA	1 cut(s)	44
Hpy8I	GTNNAC	1 cut(s)	27
HpyCH4III	ACNGT	1 cut(s)	31
HpyCH4V	TGCA	1 cut(s)	68
HpyF3I	CTNAG	2 cut(s)	111, 123
LpnPI	CCDG	2 cut(s)	63, 98
MboII	GAAGA	2 cut(s)	16, 139
MluCI	AATT	1 cut(s)	151
MnlI	CCTC	1 cut(s)	69
MseI	TTAA	1 cut(s)	63
MspA1I	CMGCKG	1 cut(s)	80
NlaIV	GGNNCC	1 cut(s)	76
PspN4I	GGNNCC	1 cut(s)	76
PspPI	GGNCC	1 cut(s)	75
SaqAI	TTAA	1 cut(s)	63
Sau96I	GGNCC	1 cut(s)	75
SetI	ASST	3 cut(s)	61, 124, 142
SgeI	CNNG	4 cut(s)	62, 83, 115, 125
SinI	GGWCC	1 cut(s)	75
Sse9I	AATT	1 cut(s)	151
SsiI	CCGC	1 cut(s)	78
TaaI	ACNGT	1 cut(s)	31
TasI	AATT	1 cut(s)	151
Tru1I	TTAA	1 cut(s)	63
Tru9I	TTAA	1 cut(s)	63
TspDTI	ATGAA	1 cut(s)	17
VpaK11BI	GGWCC	1 cut(s)	75
XmiI	GTMKAC	1 cut(s)	26

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.