Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0002797

Physical Location & Seq

Genomic Coordinates Reverse (-)

27967189 .. 27968535

Gene Structure 1347 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1233400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1347 bp

ATGCTTACCTTGAATATCAGTTGTCCTTCTTCCCCTGTCACTTTCTCCAAATCCCGCCGTCAAGTCCCCTCTATTAATGCCCCCTCCTCCCCCTCCCCCTCCTCCTCTTCACTTCTCACTCGAATCCAAACGCACTCATATCCTCTGCACCAAAAACTCACCTCTCTTAGACCCCAAACATCCCCCAAATTCTCCAAATTCTCAAGCTTTACCAGAATCTATGGCTACCCATTTGGAATTTCTTCAAAAGAAACAAAACCCATGGGCCAGATTCGAGATTCGAGCTCAAAGATCAGCCATTTGAGCGAAGCCTTTGAATTCCCATCTGGGTTTGGGAGAAAACCCAGGTCCCAAATCCCAAAAGCTGCTTCTGAATCCAATACAGGAAGAGAAACTGAAGCTACAGTCTCAAAGCCCAAGGCCACCACCGCCCAGCTCGCGCTTATTTTTGGGCTATGGTACTTCCAGAACATTGTCTTCAACGTCTACAACAAGAAGGTACTGAATGTCTTTCCATATCCATGGCTTCTCGGATCTTTTCAGCTCTTTGCTGGGTCTGTTTGGATGTTCATTCTTTGGTCTTTGAAGCTCCAACCCCGCCCGAAAATTTCTAAACCCTTCTTTGTTGCACTCCTTGGACCTGCATTGTTCCACACTATAGGCCACATTTCAGCATGTGTCTCGTTCTCTAAGGTGGCGGTTTCTTTCACCCACGTAATCAAATCGTCGGAGCCTGTTTTTTCAGTAATGTTTTCGTCGTTCCTAGGCGATTCGTACCCTTTACAGGTCTGGCTTTCAATCCTCCCTATTGTTATGGGTTGTGCTCTTGCTGCTATTACTGAGGTGTCATTCAATGTGCAAGGCCTTTGGGGTGCTTTGATTAGCAATGTCGGGTTCGTGTTGAGGAACATTTACTCGAAACGTAGTTTACAGAACTTCAAGGAAGTAGATGGGTTGAACTTGTATGGTTGGATCAGTATAATTTCGTTCTTCTATCTGTTTCCCGCCGCTATTTTCCTTGAAGGGTCTCAATGGGTTCAAGGATATCACAAAGCTCTTGCAGCTGTAGGAAAACCATCCACATTGTACCTATGGGTGTTGCTATCTGGAGTGTTTTACCATCTCTATAACCAATCATCGTATCAAGCTCTTGATGAAATTAGCCCCTTGACCTTTTCAGTAGGAAACACAATGAAGAGAGTGGTGGTAATTATATCGACTGTGTTGGTGTTCAGAAATCCAGTTAGACCTCTTAATGCACTTGGATCCGCCGTTGCAATATTTGGGACTTTCTTGTATTCGCAGGCTACAGCTAAAAAGAAAAAGGGAGGTGAAAGGAAGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006820 GO:0008028 GO:0008150 GO:0008509 GO:0008514 GO:0008643 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0015075 GO:0015120 GO:0015144 GO:0015318 GO:0015605 GO:0015711 GO:0015713 GO:0015717 GO:0015718 GO:0015748 GO:0015849 GO:0022857 GO:0031967 GO:0031975 GO:0034219 GO:0034220 GO:0035436 GO:0042873 GO:0042879 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071917 GO:0098656 GO:1901264 GO:1901505 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

449

Amino Acids

49.71

Weight (kDa)

10.04

Isoelectric Point (pI)

52.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPT	PF03151	145 - 434	6.8e-114	Triose-phosphate Transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002797)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17630
fragaria_vesca	FvH4_7g07680
malus_domestica	MD02G1233400.v1.1 MD04G1135700.v1.1 MD04G1135800.v1.1 MD07G1080200.v1.1
prunus_persica	Prupe.2G104200_v2.0.a1
pyrus_communis	pycom02g20160 pycom07g06380 pycom12g15330
rosa_chinensis	RchiOBHm_Chr1g0342641 RchiOBHm_Chr2g0089941 RchiOBHm_Chr2g0137951 RchiOBHm_Chr5g0045131 RchiOBHm_Chr5g0045141
rosa_laevigata	RLG00000009883 RLG00000029167 RLG00000029185
rosa_multiflora	Rmu_sc0000539.1_g000061 Rmu_sc0005365.1_g000006 Rmu_sc0007318.1_g000001 Rmu_ssc0000177.1_g000005
rosa_roxburghii	Rroxscaffold_4G00313140 Rroxscaffold_6G00402970
rosa_rugosa	Rorug01G0146900.1 Rorug04G0068400 Rorug04G0068500 Rorug04G0068600 Rorug07G0164400 Rorug07G0164400
rosa_samantha	Rh1AG165200 Rh1AG191600 Rh1BG131300 Rh1CG153800 Rh1DG166400 Rh2BG401800 Rh5BG310600 Rh5DG321000
rosa_wichuraiana	Rw1G013710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	649
AccI	GTMKAC	1 cut(s)	486
AccII	CGCG	1 cut(s)	440
AciI	CCGC	7 cut(s)	55, 429, 598, 698, 1005, 1008, 1269
AclWI	GGATC	4 cut(s)	541, 980, 1260, 1273
AcsI	RAATTY	5 cut(s)	188, 197, 237, 317, 606
AcuI	CTGAAG	1 cut(s)	417
AfaI	GTAC	4 cut(s)	461, 501, 776, 1088
AfiI	CCNNNNNNNGG	1 cut(s)	784
AjnI	CCWGG	1 cut(s)	344
AjuI	GAANNNNNNNTTGG	2 cut(s)	352, 384
Alw21I	GWGCWC	2 cut(s)	287, 826
Alw26I	GTCTC	3 cut(s)	412, 685, 1032
AlwI	GGATC	4 cut(s)	541, 980, 1260, 1273
AoxI	GGCC	4 cut(s)	265, 420, 661, 862
ApeKI	GCWGC	3 cut(s)	365, 830, 1061
ApoI	RAATTY	5 cut(s)	188, 197, 237, 317, 606
AseI	ATTAAT	1 cut(s)	75
Asp700I	GAANNNNTTC	1 cut(s)	241
AspA2I	CCTAGG	1 cut(s)	763
AspLEI	GCGC	1 cut(s)	442
AspS9I	GGNCC	3 cut(s)	265, 348, 638
AsuHPI	GGTGA	3 cut(s)	151, 700, 1343
AvaII	GGWCC	2 cut(s)	348, 638
AvrII	CCTAGG	1 cut(s)	763
BamHI	GGATCC	1 cut(s)	1265
BanII	GRGCYC	1 cut(s)	287
BbsI	GAAGAC	1 cut(s)	469
Bbv12I	GWGCWC	2 cut(s)	287, 826
BbvI	GCAGC	3 cut(s)	352, 817, 1073
BccI	CCATC	4 cut(s)	331, 944, 1084, 1128
BceAI	ACGGC	2 cut(s)	42, 1256
BcgI	CGANNNNNNTGC	2 cut(s)	663, 697
BciT130I	CCWGG	1 cut(s)	346
BcoDI	GTCTC	3 cut(s)	412, 685, 1032
BfaI	CTAG	1 cut(s)	764
BfmI	CTRYAG	4 cut(s)	402, 657, 1065, 1308
BfuAI	ACCTGC	1 cut(s)	649
BisI	GCNGC	4 cut(s)	366, 831, 1008, 1062
BlnI	CCTAGG	1 cut(s)	763
BlsI	GCNGC	4 cut(s)	367, 832, 1009, 1063
Bme1390I	CCNGG	1 cut(s)	346
Bme18I	GGWCC	2 cut(s)	348, 638
BmgT120I	GGNCC	3 cut(s)	265, 348, 638
BmiI	GGNNCC	3 cut(s)	350, 732, 1267
BmrFI	CCNGG	1 cut(s)	346
BpiI	GAAGAC	1 cut(s)	469
BpmI	CTGGAG	1 cut(s)	1128
BpuEI	CTTGAG	1 cut(s)	187
BsaAI	YACGTR	1 cut(s)	715
BsaI	GGTCTC	1 cut(s)	1032
BsaJI	CCNNGG	6 cut(s)	261, 344, 417, 521, 634, 763
Bsc4I	CCNNNNNNNGG	1 cut(s)	784
Bse1I	ACTGG	1 cut(s)	1241
Bse3DI	GCAATG	1 cut(s)	892
BseBI	CCWGG	1 cut(s)	346
BseDI	CCNNGG	6 cut(s)	261, 344, 417, 521, 634, 763
BseGI	GGATG	3 cut(s)	179, 570, 1076
BseLI	CCNNNNNNNGG	1 cut(s)	784
BseMI	GCAATG	1 cut(s)	892
BseMII	CTCAG	1 cut(s)	831
BseNI	ACTGG	1 cut(s)	1241
BseRI	GAGGAG	3 cut(s)	76, 91, 94
BseXI	GCAGC	3 cut(s)	352, 817, 1073
BseYI	CCCAGC	2 cut(s)	432, 551
BsgI	GTGCAG	1 cut(s)	131
Bsh1236I	CGCG	1 cut(s)	440
BshFI	GGCC	4 cut(s)	267, 422, 663, 864
BsiHKAI	GWGCWC	2 cut(s)	287, 826
BslFI	GGGAC	3 cut(s)	50, 334, 1300
BslI	CCNNNNNNNGG	1 cut(s)	784
BsmAI	GTCTC	3 cut(s)	412, 685, 1032
BsmFI	GGGAC	3 cut(s)	50, 334, 1300
BsnI	GGCC	4 cut(s)	267, 422, 663, 864
Bso31I	GGTCTC	1 cut(s)	1032
Bsp1286I	GDGCHC	2 cut(s)	287, 826
Bsp143I	GATC	4 cut(s)	291, 533, 972, 1265
Bsp19I	CCATGG	2 cut(s)	261, 521
BspACI	CCGC	7 cut(s)	55, 429, 598, 698, 1005, 1008, 1269
BspANI	GGCC	4 cut(s)	267, 422, 663, 864
BspCNI	CTCAG	1 cut(s)	832
BspFNI	CGCG	1 cut(s)	440
BspLI	GGNNCC	3 cut(s)	350, 732, 1267
BspMI	ACCTGC	1 cut(s)	649
BspPI	GGATC	4 cut(s)	541, 980, 1260, 1273
BspTNI	GGTCTC	1 cut(s)	1032
BsrDI	GCAATG	1 cut(s)	892
BsrI	ACTGG	1 cut(s)	1241
BssECI	CCNNGG	6 cut(s)	261, 344, 417, 521, 634, 763
BssMI	GATC	4 cut(s)	291, 533, 972, 1265
BssT1I	CCWWGG	5 cut(s)	261, 417, 521, 634, 763
Bst2UI	CCWGG	1 cut(s)	346
Bst4CI	ACNGT	2 cut(s)	406, 1222
Bst6I	CTCTTC	3 cut(s)	112, 382, 1190
BstBAI	YACGTR	1 cut(s)	715
BstC8I	GCNNGC	2 cut(s)	438, 1305
BstDEI	CTNAG	3 cut(s)	167, 690, 840
BstDSI	CCRYGG	2 cut(s)	261, 521
BstF5I	GGATG	3 cut(s)	179, 570, 1076
BstFNI	CGCG	1 cut(s)	440
BstHHI	GCGC	1 cut(s)	442
BstKTI	GATC	4 cut(s)	294, 536, 975, 1268
BstMAI	GTCTC	3 cut(s)	412, 685, 1032
BstMBI	GATC	4 cut(s)	291, 533, 972, 1265
BstMWI	GCNNNNNNNGC	5 cut(s)	303, 428, 437, 830, 1061
BstNI	CCWGG	1 cut(s)	346
BstNSI	RCATGY	1 cut(s)	678
BstSCI	CCNGG	1 cut(s)	344
BstSFI	CTRYAG	4 cut(s)	402, 657, 1065, 1308
BstUI	CGCG	1 cut(s)	440
BstV1I	GCAGC	3 cut(s)	352, 817, 1073
BstV2I	GAAGAC	1 cut(s)	469
BstX2I	RGATCY	2 cut(s)	533, 1265
BstXI	CCANNNNNNTGG	1 cut(s)	522
BstYI	RGATCY	2 cut(s)	533, 1265
BsuRI	GGCC	4 cut(s)	267, 422, 663, 864
BtgI	CCRYGG	2 cut(s)	261, 521
BtsCI	GGATG	3 cut(s)	179, 570, 1076
BveI	ACCTGC	1 cut(s)	649
Cac8I	GCNNGC	2 cut(s)	438, 1305
CfoI	GCGC	1 cut(s)	442
Cfr13I	GGNCC	3 cut(s)	265, 348, 638
Csp6I	GTAC	4 cut(s)	460, 500, 775, 1087
CviAII	CATG	3 cut(s)	262, 522, 675
CviQI	GTAC	4 cut(s)	460, 500, 775, 1087
DdeI	CTNAG	3 cut(s)	167, 690, 840
DpnI	GATC	4 cut(s)	293, 535, 974, 1267
DpnII	GATC	4 cut(s)	291, 533, 972, 1265
Eam1104I	CTCTTC	3 cut(s)	112, 382, 1190
EarI	CTCTTC	3 cut(s)	112, 382, 1190
EciI	GGCGGA	1 cut(s)	1258
Ecl136II	GAGCTC	1 cut(s)	285
Eco130I	CCWWGG	5 cut(s)	261, 417, 521, 634, 763
Eco147I	AGGCCT	1 cut(s)	864
Eco24I	GRGCYC	1 cut(s)	287
Eco31I	GGTCTC	1 cut(s)	1032
Eco32I	GATATC	1 cut(s)	1046
Eco47I	GGWCC	2 cut(s)	348, 638
Eco53kI	GAGCTC	1 cut(s)	285
Eco57I	CTGAAG	1 cut(s)	417
EcoICRI	GAGCTC	1 cut(s)	285
EcoO109I	RGGNCCY	1 cut(s)	348
EcoRI	GAATTC	1 cut(s)	317
EcoRII	CCWGG	1 cut(s)	344
EcoRV	GATATC	1 cut(s)	1046
EcoT14I	CCWWGG	5 cut(s)	261, 417, 521, 634, 763
EcoT38I	GRGCYC	1 cut(s)	287
ErhI	CCWWGG	5 cut(s)	261, 417, 521, 634, 763
FaeI	CATG	3 cut(s)	265, 525, 678
FaqI	GGGAC	3 cut(s)	50, 334, 1300
FatI	CATG	3 cut(s)	261, 521, 674
FauI	CCCGC	3 cut(s)	62, 605, 1012
FblI	GTMKAC	1 cut(s)	486
Fnu4HI	GCNGC	4 cut(s)	366, 831, 1008, 1062
FokI	GGATG	3 cut(s)	166, 577, 1063
FriOI	GRGCYC	1 cut(s)	287
Fsp4HI	GCNGC	4 cut(s)	366, 831, 1008, 1062
FspBI	CTAG	1 cut(s)	764
GlaI	GCGC	1 cut(s)	441
GluI	GCNGC	4 cut(s)	366, 831, 1008, 1062
GsaI	CCCAGC	2 cut(s)	436, 555
GsuI	CTGGAG	1 cut(s)	1128
HaeIII	GGCC	4 cut(s)	267, 422, 663, 864
HhaI	GCGC	1 cut(s)	442
Hin1II	CATG	3 cut(s)	265, 525, 678
Hin6I	GCGC	1 cut(s)	440
HinP1I	GCGC	1 cut(s)	440
HindIII	AAGCTT	1 cut(s)	205
HinfI	GANTC	6 cut(s)	123, 216, 271, 278, 374, 770
HphI	GGTGA	3 cut(s)	151, 700, 1343
Hpy166II	GTNNAC	2 cut(s)	487, 929
Hpy188I	TCNGA	4 cut(s)	373, 533, 730, 1235
Hpy188III	TCNNGA	4 cut(s)	275, 466, 1107, 1151
Hpy8I	GTNNAC	2 cut(s)	487, 929
Hpy99I	CGWCG	2 cut(s)	730, 760
HpyAV	CCTTC	5 cut(s)	36, 490, 628, 1016, 1333
HpyCH4III	ACNGT	2 cut(s)	406, 1222
HpyCH4IV	ACGT	3 cut(s)	483, 714, 922
HpyCH4V	TGCA	7 cut(s)	148, 629, 644, 859, 1061, 1259, 1277
HpyF10VI	GCNNNNNNNGC	5 cut(s)	303, 428, 437, 830, 1061
HpyF3I	CTNAG	3 cut(s)	167, 690, 840
HpySE526I	ACGT	3 cut(s)	483, 714, 922
Hsp92II	CATG	3 cut(s)	265, 525, 678
HspAI	GCGC	1 cut(s)	440
Kzo9I	GATC	4 cut(s)	291, 533, 972, 1265
LmnI	GCTCC	2 cut(s)	594, 730
Lsp1109I	GCAGC	3 cut(s)	352, 817, 1073
MaeI	CTAG	1 cut(s)	764
MaeII	ACGT	3 cut(s)	483, 714, 922
MaeIII	GTNAC	1 cut(s)	37
MalI	GATC	4 cut(s)	293, 535, 974, 1267
MboI	GATC	4 cut(s)	291, 533, 972, 1265
MboII	GAAGA	7 cut(s)	21, 99, 234, 399, 469, 982, 1207
MflI	RGATCY	2 cut(s)	533, 1265
MhlI	GDGCHC	2 cut(s)	287, 826
MluCI	AATT	8 cut(s)	188, 197, 237, 317, 606, 981, 1158, 1209
MmeI	TCCRAC	3 cut(s)	616, 708, 950
MroXI	GAANNNNTTC	1 cut(s)	241
MseI	TTAA	2 cut(s)	75, 1254
MslI	CAYNNNNRTG	1 cut(s)	520
MspA1I	CMGCKG	1 cut(s)	1064
MspR9I	CCNGG	1 cut(s)	346
MvaI	CCWGG	1 cut(s)	346
MvnI	CGCG	1 cut(s)	440
MwoI	GCNNNNNNNGC	5 cut(s)	303, 428, 437, 830, 1061
NcoI	CCATGG	2 cut(s)	261, 521
NdeII	GATC	4 cut(s)	291, 533, 972, 1265
NlaIII	CATG	3 cut(s)	265, 525, 678
NlaIV	GGNNCC	3 cut(s)	350, 732, 1267
NmuCI	GTSAC	1 cut(s)	37
NspI	RCATGY	1 cut(s)	678
PceI	AGGCCT	1 cut(s)	864
PdmI	GAANNNNTTC	1 cut(s)	241
PfeI	GAWTC	6 cut(s)	123, 216, 271, 278, 374, 770
PkrI	GCNGC	4 cut(s)	367, 832, 1009, 1063
Ppu21I	YACGTR	1 cut(s)	715
PpuMI	RGGWCCY	1 cut(s)	348
PshBI	ATTAAT	1 cut(s)	75
Psp124BI	GAGCTC	1 cut(s)	287
Psp5II	RGGWCCY	1 cut(s)	348
Psp6I	CCWGG	1 cut(s)	344
PspFI	CCCAGC	2 cut(s)	432, 551
PspGI	CCWGG	1 cut(s)	344
PspN4I	GGNNCC	3 cut(s)	350, 732, 1267
PspPI	GGNCC	3 cut(s)	265, 348, 638
PspPPI	RGGWCCY	1 cut(s)	348
PsuI	RGATCY	2 cut(s)	533, 1265
PvuII	CAGCTG	1 cut(s)	1064
RsaI	GTAC	4 cut(s)	461, 501, 776, 1088
RsaNI	GTAC	4 cut(s)	460, 500, 775, 1087
RseI	CAYNNNNRTG	1 cut(s)	520
SacI	GAGCTC	1 cut(s)	287
SaqAI	TTAA	2 cut(s)	75, 1254
SatI	GCNGC	4 cut(s)	366, 831, 1008, 1062
Sau3AI	GATC	4 cut(s)	291, 533, 972, 1265
Sau96I	GGNCC	3 cut(s)	265, 348, 638
ScrFI	CCNGG	1 cut(s)	346
SduI	GDGCHC	2 cut(s)	287, 826
SfcI	CTRYAG	4 cut(s)	402, 657, 1065, 1308
SinI	GGWCC	2 cut(s)	348, 638
SmiMI	CAYNNNNRTG	1 cut(s)	520
SmlI	CTYRAG	1 cut(s)	202
SmoI	CTYRAG	1 cut(s)	202
Sse9I	AATT	8 cut(s)	188, 197, 237, 317, 606, 981, 1158, 1209
SseBI	AGGCCT	1 cut(s)	864
SsiI	CCGC	7 cut(s)	55, 429, 598, 698, 1005, 1008, 1269
SspI	AATATT	1 cut(s)	1281
SspMI	CTAG	1 cut(s)	764
SstI	GAGCTC	1 cut(s)	287
StuI	AGGCCT	1 cut(s)	864
StyD4I	CCNGG	1 cut(s)	344
StyI	CCWWGG	5 cut(s)	261, 417, 521, 634, 763
TaaI	ACNGT	2 cut(s)	406, 1222
TaiI	ACGT	3 cut(s)	486, 717, 925
TaqI	TCGA	5 cut(s)	121, 274, 281, 917, 1217
TasI	AATT	8 cut(s)	188, 197, 237, 317, 606, 981, 1158, 1209
TauI	GCSGC	1 cut(s)	1010
TfiI	GAWTC	6 cut(s)	123, 216, 271, 278, 374, 770
Tru1I	TTAA	2 cut(s)	75, 1254
Tru9I	TTAA	2 cut(s)	75, 1254
TseFI	GTSAC	1 cut(s)	37
TseI	GCWGC	3 cut(s)	365, 830, 1061
Tsp45I	GTSAC	1 cut(s)	37
TspDTI	ATGAA	3 cut(s)	559, 1170, 1208
VpaK11BI	GGWCC	2 cut(s)	348, 638
VspI	ATTAAT	1 cut(s)	75
XapI	RAATTY	5 cut(s)	188, 197, 237, 317, 606
XceI	RCATGY	1 cut(s)	678
XmaJI	CCTAGG	1 cut(s)	763
XmiI	GTMKAC	1 cut(s)	486
XmnI	GAANNNNTTC	1 cut(s)	241
XspI	CTAG	1 cut(s)	764

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.