Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0002797

Physical Location & Seq

Genomic Coordinates Forward (+)

22274965 .. 22275120

Gene Structure 156 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1135800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 156 bp

ATGAAGAGAGTGGCGGTTATCGTATCGACTGTGTTGGTGTACAGAAATCCAGTTAGATCTCTTAATGCACTTGGATCCGCCTTTGCAATATTGGGGACTTTCTTGTATTCACATGCAACAGCTAAAAAGAAAAAGGGAGGTGAAAAGAAGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006820 GO:0008028 GO:0008150 GO:0008509 GO:0008514 GO:0008643 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0015075 GO:0015120 GO:0015144 GO:0015318 GO:0015605 GO:0015711 GO:0015713 GO:0015717 GO:0015718 GO:0015748 GO:0015849 GO:0022857 GO:0031967 GO:0031975 GO:0034219 GO:0034220 GO:0035436 GO:0042873 GO:0042879 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071917 GO:0098656 GO:1901264 GO:1901505 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

52

Amino Acids

5.54

Weight (kDa)

10.52

Isoelectric Point (pI)

27.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPT	PF03151	1 - 37	3e-11	Triose-phosphate Transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0002797)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17630
fragaria_vesca	FvH4_7g07680
malus_domestica	MD02G1233400.v1.1 MD04G1135700.v1.1 MD04G1135800.v1.1 MD07G1080200.v1.1
prunus_persica	Prupe.2G104200_v2.0.a1
pyrus_communis	pycom02g20160 pycom07g06380 pycom12g15330
rosa_chinensis	RchiOBHm_Chr1g0342641 RchiOBHm_Chr2g0089941 RchiOBHm_Chr2g0137951 RchiOBHm_Chr5g0045131 RchiOBHm_Chr5g0045141
rosa_laevigata	RLG00000009883 RLG00000029167 RLG00000029185
rosa_multiflora	Rmu_sc0000539.1_g000061 Rmu_sc0005365.1_g000006 Rmu_sc0007318.1_g000001 Rmu_ssc0000177.1_g000005
rosa_roxburghii	Rroxscaffold_4G00313140 Rroxscaffold_6G00402970
rosa_rugosa	Rorug01G0146900.1 Rorug04G0068400 Rorug04G0068500 Rorug04G0068600 Rorug07G0164400 Rorug07G0164400
rosa_samantha	Rh1AG165200 Rh1AG191600 Rh1BG131300 Rh1CG153800 Rh1DG166400 Rh2BG401800 Rh5BG310600 Rh5DG321000
rosa_wichuraiana	Rw1G013710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	14, 78
AclWI	GGATC	2 cut(s)	69, 82
AfaI	GTAC	1 cut(s)	41
AluBI	AGCT	1 cut(s)	122
AluI	AGCT	1 cut(s)	122
AlwI	GGATC	2 cut(s)	69, 82
AsuHPI	GGTGA	1 cut(s)	152
BamHI	GGATCC	1 cut(s)	74
BglII	AGATCT	1 cut(s)	56
BmiI	GGNNCC	1 cut(s)	76
Bse1I	ACTGG	1 cut(s)	50
BseNI	ACTGG	1 cut(s)	50
BslFI	GGGAC	1 cut(s)	109
BsmFI	GGGAC	1 cut(s)	109
Bsp1407I	TGTACA	1 cut(s)	39
Bsp143I	GATC	2 cut(s)	56, 74
BspACI	CCGC	2 cut(s)	14, 78
BspLI	GGNNCC	1 cut(s)	76
BspPI	GGATC	2 cut(s)	69, 82
BsrGI	TGTACA	1 cut(s)	39
BsrI	ACTGG	1 cut(s)	50
BssMI	GATC	2 cut(s)	56, 74
Bst4CI	ACNGT	1 cut(s)	31
BstAUI	TGTACA	1 cut(s)	39
BstKTI	GATC	2 cut(s)	59, 77
BstMBI	GATC	2 cut(s)	56, 74
BstNSI	RCATGY	1 cut(s)	116
BstX2I	RGATCY	2 cut(s)	56, 74
BstYI	RGATCY	2 cut(s)	56, 74
Csp6I	GTAC	1 cut(s)	40
CviAII	CATG	1 cut(s)	113
CviJI	RGCY	1 cut(s)	122
CviKI_1	RGCY	1 cut(s)	122
CviQI	GTAC	1 cut(s)	40
DpnI	GATC	2 cut(s)	58, 76
DpnII	GATC	2 cut(s)	56, 74
EciI	GGCGGA	1 cut(s)	67
FaeI	CATG	1 cut(s)	116
FaiI	YATR	1 cut(s)	114
FaqI	GGGAC	1 cut(s)	109
FatI	CATG	1 cut(s)	112
Hin1II	CATG	1 cut(s)	116
HphI	GGTGA	1 cut(s)	152
Hpy166II	GTNNAC	1 cut(s)	40
Hpy8I	GTNNAC	1 cut(s)	40
HpyAV	CCTTC	1 cut(s)	142
HpyCH4III	ACNGT	1 cut(s)	31
HpyCH4V	TGCA	3 cut(s)	68, 86, 116
Hsp92II	CATG	1 cut(s)	116
Kzo9I	GATC	2 cut(s)	56, 74
LpnPI	CCDG	1 cut(s)	63
MalI	GATC	2 cut(s)	58, 76
MboI	GATC	2 cut(s)	56, 74
MboII	GAAGA	1 cut(s)	16
MflI	RGATCY	2 cut(s)	56, 74
MnlI	CCTC	1 cut(s)	131
MseI	TTAA	1 cut(s)	63
NdeII	GATC	2 cut(s)	56, 74
NlaIII	CATG	1 cut(s)	116
NlaIV	GGNNCC	1 cut(s)	76
NspI	RCATGY	1 cut(s)	116
PspN4I	GGNNCC	1 cut(s)	76
PsuI	RGATCY	2 cut(s)	56, 74
RsaI	GTAC	1 cut(s)	41
RsaNI	GTAC	1 cut(s)	40
SaqAI	TTAA	1 cut(s)	63
Sau3AI	GATC	2 cut(s)	56, 74
SetI	ASST	2 cut(s)	124, 142
SgeI	CNNG	4 cut(s)	62, 83, 115, 125
SsiI	CCGC	2 cut(s)	14, 78
SspI	AATATT	1 cut(s)	90
TaaI	ACNGT	1 cut(s)	31
TaqI	TCGA	1 cut(s)	26
TatI	WGTACW	1 cut(s)	39
Tru1I	TTAA	1 cut(s)	63
Tru9I	TTAA	1 cut(s)	63
TspDTI	ATGAA	1 cut(s)	17
XceI	RCATGY	1 cut(s)	116

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.