Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0002797

Physical Location & Seq

Genomic Coordinates Forward (+)

16096135 .. 16097475

Gene Structure 1341 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G104200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1341 bp

ATGCTTACCTTGAATCTAAGTTGTCCTGCTTCCACTGTCACTTTCCCCCAATCCGGACATCAACACCCCATTAATGCCTCCTCTTCACTTCTCAATCCGAATCTTCTCAACCGAATCCAAATCCAGAGAACCCTACACACCTCATTTCCTCTGCTCCACAAACCCACCTCTCCCAAACTTGAAGCATCCACCAAAGTCTCAAGCTTTAGCAGAATTTATGGCCACCCAATTGGAATTTCTTCAAAACCCATATCTCAGGTCCAAGATTGGGGCTCAAAGATCAGTCAATTGAACAAAACCTGTGGATTCCCATCTGGGTTTTCTTCCAAACCCAGATTCCAAATCCCCAAAGCTGCATCTGAGGCCAATCCAGAACGAGGAGAAAGTGAAGCTGCAGTTTCAAAGCCCAAGGCCACAACCGCCCAGCTTGCACTTATTTTTGGGCTCTGGTACTTCCAGAACATTGTCTTTAACATTTACAACAAGAAGATATTAAATATTTTCCCATTTCCATGGCTTCTTGCTTCTTTTCAGCTCTTTGCTGGGTCTGTTTGGATGTTGGCTCTCTGGTCTTTGAAGCTCCAACCATGCCCCAAAATATCAAAACCATTCATAGTTGCACTCCTTGGACCTGCATTGTTCCACACAATAGGCCACATCTCAGCATGTGTCTCATTCTCTAAGGTGGCTGTTTCTTTCACCCATGTAATCAAATCTTCAGAGCCTGTTTTCTCGGTTGTCTTTTCGTCGTTCGTAGGCGATTCGTACCCTTTACAGGTCTGGCTTTCAATCCTCCCTATTGTCTTGGGTTGTTCTCTAGCTGCAATTACTGAGGTGTCATTCAATTTCCAAGGCCTGTGGGGTGCGTTGATTAGCAATGTTGGGTTTGTGTTGAGAAATATTTACTCAAAACGCAGTTTACAGAACTTCAAGGAGGTAGATGGGTTGAATTTGTATGGTTGGATCACCATACTTTCACTCCTCTATCTGTTTCCTGTTGCTATTTTTGTTGAAGGGTCTCAATGGGTTCAAGGGTATCACAGAGCTATTGCAACTGTAGGAAAACCATCCACATTTTATATATGGGTGTTGTTATCTGGAGTGTTTTACCATCTCTATAACCAGTCGTCTTATCAGGCTCTTGATGAAATTAGCCCCTTGACATTTTCAGTTGGAAACACAATGAAGAGAGTGGTGGTAATTGTATCTACTGTGTTGGTGTTCAGAAATCCAGTTAGACCTCTTAATGCACTTGGATCCGCCCTTGCGATATTTGGGACTTTCCTGTATTCACAGGCAACAGCATCTAAAAAGCAAAAGGGCGGTGAAAAGAAGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006820 GO:0008028 GO:0008150 GO:0008509 GO:0008514 GO:0008643 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0015075 GO:0015120 GO:0015144 GO:0015318 GO:0015605 GO:0015711 GO:0015713 GO:0015717 GO:0015718 GO:0015748 GO:0015849 GO:0022857 GO:0031967 GO:0031975 GO:0034219 GO:0034220 GO:0035436 GO:0042873 GO:0042879 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071917 GO:0098656 GO:1901264 GO:1901505 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

447

Amino Acids

49.18

Weight (kDa)

9.87

Isoelectric Point (pI)

44.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002797)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17630
fragaria_vesca	FvH4_7g07680
malus_domestica	MD02G1233400.v1.1 MD04G1135700.v1.1 MD04G1135800.v1.1 MD07G1080200.v1.1
prunus_persica	Prupe.2G104200_v2.0.a1
pyrus_communis	pycom02g20160 pycom07g06380 pycom12g15330
rosa_chinensis	RchiOBHm_Chr1g0342641 RchiOBHm_Chr2g0089941 RchiOBHm_Chr2g0137951 RchiOBHm_Chr5g0045131 RchiOBHm_Chr5g0045141
rosa_laevigata	RLG00000009883 RLG00000029167 RLG00000029185
rosa_multiflora	Rmu_sc0000539.1_g000061 Rmu_sc0005365.1_g000006 Rmu_sc0007318.1_g000001 Rmu_ssc0000177.1_g000005
rosa_roxburghii	Rroxscaffold_4G00313140 Rroxscaffold_6G00402970
rosa_rugosa	Rorug01G0146900.1 Rorug04G0068400 Rorug04G0068500 Rorug04G0068600 Rorug07G0164400 Rorug07G0164400
rosa_samantha	Rh1AG165200 Rh1AG191600 Rh1BG131300 Rh1CG153800 Rh1DG166400 Rh2BG401800 Rh5BG310600 Rh5DG321000
rosa_wichuraiana	Rw1G013710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	640
AccIII	TCCGGA	1 cut(s)	53
AciI	CCGC	3 cut(s)	420, 1260, 1323
AclWI	GGATC	3 cut(s)	971, 1251, 1264
AcoI	YGGCCR	1 cut(s)	220
AcsI	RAATTY	3 cut(s)	213, 234, 949
AcuI	CTGAAG	1 cut(s)	702
AfaI	GTAC	2 cut(s)	452, 767
AfiI	CCNNNNNNNGG	4 cut(s)	53, 268, 377, 775
AjuI	GAANNNNNNNTTGG	4 cut(s)	220, 252, 320, 352
AluBI	AGCT	8 cut(s)	204, 353, 392, 427, 535, 580, 821, 1046
AluI	AGCT	8 cut(s)	204, 353, 392, 427, 535, 580, 821, 1046
Alw26I	GTCTC	3 cut(s)	202, 676, 1023
AlwI	GGATC	3 cut(s)	971, 1251, 1264
AlwNI	CAGNNNCTG	1 cut(s)	725
Aor13HI	TCCGGA	1 cut(s)	53
AoxI	GGCC	5 cut(s)	220, 363, 411, 652, 853
ApeKI	GCWGC	3 cut(s)	353, 392, 821
ApoI	RAATTY	3 cut(s)	213, 234, 949
AseI	ATTAAT	1 cut(s)	72
Asp700I	GAANNNNTTC	1 cut(s)	238
AspS9I	GGNCC	2 cut(s)	259, 629
AsuHPI	GGTGA	3 cut(s)	691, 958, 1337
AvaII	GGWCC	2 cut(s)	259, 629
BalI	TGGCCA	1 cut(s)	222
BamHI	GGATCC	1 cut(s)	1256
BanII	GRGCYC	2 cut(s)	275, 447
BbvI	GCAGC	3 cut(s)	340, 379, 808
BccI	CCATC	4 cut(s)	319, 935, 1075, 1119
BcoDI	GTCTC	3 cut(s)	202, 676, 1023
BfaI	CTAG	1 cut(s)	818
BfmI	CTRYAG	2 cut(s)	393, 1056
BfuAI	ACCTGC	1 cut(s)	640
BisI	GCNGC	3 cut(s)	354, 393, 822
BlsI	GCNGC	3 cut(s)	355, 394, 823
Bme18I	GGWCC	2 cut(s)	259, 629
BmgT120I	GGNCC	2 cut(s)	259, 629
BmiI	GGNNCC	1 cut(s)	1258
BmsI	GCATC	3 cut(s)	194, 365, 1313
BpmI	CTGGAG	1 cut(s)	1119
BpuEI	CTTGAG	1 cut(s)	184
BsaBI	GATNNNNATC	1 cut(s)	310
BsaI	GGTCTC	1 cut(s)	1023
BsaJI	CCNNGG	4 cut(s)	408, 512, 625, 850
BsaWI	WCCGGW	1 cut(s)	53
BsaXI	ACNNNNNCTCC	2 cut(s)	963, 993
Bsc4I	CCNNNNNNNGG	4 cut(s)	53, 268, 377, 775
Bse1I	ACTGG	2 cut(s)	1123, 1232
Bse3DI	GCAATG	1 cut(s)	883
Bse8I	GATNNNNATC	1 cut(s)	310
BseAI	TCCGGA	1 cut(s)	53
BseDI	CCNNGG	4 cut(s)	408, 512, 625, 850
BseGI	GGATG	3 cut(s)	185, 561, 1067
BseJI	GATNNNNATC	1 cut(s)	310
BseLI	CCNNNNNNNGG	4 cut(s)	53, 268, 377, 775
BseMI	GCAATG	1 cut(s)	883
BseMII	CTCAG	4 cut(s)	269, 351, 675, 822
BseNI	ACTGG	2 cut(s)	1123, 1232
BseRI	GAGGAG	3 cut(s)	70, 393, 971
BseXI	GCAGC	3 cut(s)	340, 379, 808
BseYI	CCCAGC	2 cut(s)	423, 542
BshFI	GGCC	5 cut(s)	222, 365, 413, 654, 855
BsiSI	CCGG	1 cut(s)	54
BslFI	GGGAC	1 cut(s)	1291
BslI	CCNNNNNNNGG	4 cut(s)	53, 268, 377, 775
BsmAI	GTCTC	3 cut(s)	202, 676, 1023
BsmFI	GGGAC	1 cut(s)	1291
BsnI	GGCC	5 cut(s)	222, 365, 413, 654, 855
Bso31I	GGTCTC	1 cut(s)	1023
Bsp1286I	GDGCHC	2 cut(s)	275, 447
Bsp13I	TCCGGA	1 cut(s)	53
Bsp143I	GATC	3 cut(s)	279, 963, 1256
Bsp19I	CCATGG	1 cut(s)	512
BspACI	CCGC	3 cut(s)	420, 1260, 1323
BspANI	GGCC	5 cut(s)	222, 365, 413, 654, 855
BspCNI	CTCAG	4 cut(s)	268, 352, 674, 823
BspEI	TCCGGA	1 cut(s)	53
BspLI	GGNNCC	1 cut(s)	1258
BspMAI	CTGCAG	1 cut(s)	397
BspMI	ACCTGC	1 cut(s)	640
BspPI	GGATC	3 cut(s)	971, 1251, 1264
BspTNI	GGTCTC	1 cut(s)	1023
BsrDI	GCAATG	1 cut(s)	883
BsrI	ACTGG	2 cut(s)	1123, 1232
BssECI	CCNNGG	4 cut(s)	408, 512, 625, 850
BssMI	GATC	3 cut(s)	279, 963, 1256
BssT1I	CCWWGG	4 cut(s)	408, 512, 625, 850
Bst4CI	ACNGT	3 cut(s)	37, 1057, 1213
Bst6I	CTCTTC	2 cut(s)	88, 1181
BstC8I	GCNNGC	1 cut(s)	429
BstDEI	CTNAG	6 cut(s)	17, 255, 360, 661, 681, 831
BstDSI	CCRYGG	1 cut(s)	512
BstF5I	GGATG	3 cut(s)	185, 561, 1067
BstKTI	GATC	3 cut(s)	282, 966, 1259
BstMAI	GTCTC	3 cut(s)	202, 676, 1023
BstMBI	GATC	3 cut(s)	279, 963, 1256
BstMWI	GCNNNNNNNGC	3 cut(s)	362, 419, 428
BstNSI	RCATGY	1 cut(s)	669
BstSFI	CTRYAG	2 cut(s)	393, 1056
BstV1I	GCAGC	3 cut(s)	340, 379, 808
BstX2I	RGATCY	1 cut(s)	1256
BstXI	CCANNNNNNTGG	2 cut(s)	230, 513
BstYI	RGATCY	1 cut(s)	1256
BsuRI	GGCC	5 cut(s)	222, 365, 413, 654, 855
BtgI	CCRYGG	1 cut(s)	512
BtsCI	GGATG	3 cut(s)	185, 561, 1067
BtsIMutI	CAGTG	1 cut(s)	33
BveI	ACCTGC	1 cut(s)	640
Cac8I	GCNNGC	1 cut(s)	429
CaiI	CAGNNNCTG	1 cut(s)	725
Cfr13I	GGNCC	2 cut(s)	259, 629
Csp6I	GTAC	2 cut(s)	451, 766
CspCI	CAANNNNNGTGG	4 cut(s)	283, 318, 839, 874
CviAII	CATG	4 cut(s)	513, 588, 666, 704
CviQI	GTAC	2 cut(s)	451, 766
DdeI	CTNAG	6 cut(s)	17, 255, 360, 661, 681, 831
DpnI	GATC	3 cut(s)	281, 965, 1258
DpnII	GATC	3 cut(s)	279, 963, 1256
EaeI	YGGCCR	1 cut(s)	220
Eam1104I	CTCTTC	2 cut(s)	88, 1181
EarI	CTCTTC	2 cut(s)	88, 1181
EciI	GGCGGA	1 cut(s)	1249
Eco130I	CCWWGG	4 cut(s)	408, 512, 625, 850
Eco147I	AGGCCT	1 cut(s)	855
Eco24I	GRGCYC	2 cut(s)	275, 447
Eco31I	GGTCTC	1 cut(s)	1023
Eco47I	GGWCC	2 cut(s)	259, 629
Eco57I	CTGAAG	1 cut(s)	702
EcoT14I	CCWWGG	4 cut(s)	408, 512, 625, 850
EcoT38I	GRGCYC	2 cut(s)	275, 447
ErhI	CCWWGG	4 cut(s)	408, 512, 625, 850
FaeI	CATG	4 cut(s)	516, 591, 669, 707
FaqI	GGGAC	1 cut(s)	1291
FatI	CATG	4 cut(s)	512, 587, 665, 703
Fnu4HI	GCNGC	3 cut(s)	354, 393, 822
FokI	GGATG	3 cut(s)	172, 568, 1054
FriOI	GRGCYC	2 cut(s)	275, 447
Fsp4HI	GCNGC	3 cut(s)	354, 393, 822
FspBI	CTAG	1 cut(s)	818
GluI	GCNGC	3 cut(s)	354, 393, 822
GsaI	CCCAGC	2 cut(s)	427, 546
GsuI	CTGGAG	1 cut(s)	1119
HaeIII	GGCC	5 cut(s)	222, 365, 413, 654, 855
HapII	CCGG	1 cut(s)	54
Hin1II	CATG	4 cut(s)	516, 591, 669, 707
HindIII	AAGCTT	1 cut(s)	202
HinfI	GANTC	6 cut(s)	13, 100, 114, 306, 336, 761
HpaII	CCGG	1 cut(s)	54
HphI	GGTGA	3 cut(s)	691, 958, 1337
Hpy166II	GTNNAC	1 cut(s)	920
Hpy188I	TCNGA	4 cut(s)	99, 361, 721, 1226
Hpy188III	TCNNGA	6 cut(s)	54, 124, 371, 457, 1098, 1142
Hpy8I	GTNNAC	1 cut(s)	920
Hpy99I	CGWCG	1 cut(s)	751
HpyAV	CCTTC	1 cut(s)	1007
HpyCH4III	ACNGT	3 cut(s)	37, 1057, 1213
HpyCH4V	TGCA	8 cut(s)	356, 395, 431, 620, 635, 824, 1052, 1250
HpyF10VI	GCNNNNNNNGC	3 cut(s)	362, 419, 428
HpyF3I	CTNAG	6 cut(s)	17, 255, 360, 661, 681, 831
Hsp92II	CATG	4 cut(s)	516, 591, 669, 707
Kpn2I	TCCGGA	1 cut(s)	53
Kzo9I	GATC	3 cut(s)	279, 963, 1256
LmnI	GCTCC	2 cut(s)	159, 585
Lsp1109I	GCAGC	3 cut(s)	340, 379, 808
LweI	GCATC	3 cut(s)	194, 365, 1313
MaeI	CTAG	1 cut(s)	818
MaeIII	GTNAC	1 cut(s)	37
MalI	GATC	3 cut(s)	281, 965, 1258
MboI	GATC	3 cut(s)	279, 963, 1256
MboII	GAAGA	7 cut(s)	75, 95, 231, 315, 499, 708, 1198
MfeI	CAATTG	2 cut(s)	228, 287
MflI	RGATCY	1 cut(s)	1256
MhlI	GDGCHC	2 cut(s)	275, 447
MlsI	TGGCCA	1 cut(s)	222
MluNI	TGGCCA	1 cut(s)	222
MmeI	TCCRAC	3 cut(s)	607, 941, 1153
Mox20I	TGGCCA	1 cut(s)	222
MroI	TCCGGA	1 cut(s)	53
MroXI	GAANNNNTTC	1 cut(s)	238
MscI	TGGCCA	1 cut(s)	222
MseI	TTAA	4 cut(s)	72, 471, 494, 1245
MslI	CAYNNNNRTG	1 cut(s)	511
Msp20I	TGGCCA	1 cut(s)	222
MspI	CCGG	1 cut(s)	54
MunI	CAATTG	2 cut(s)	228, 287
MwoI	GCNNNNNNNGC	3 cut(s)	362, 419, 428
NcoI	CCATGG	1 cut(s)	512
NdeII	GATC	3 cut(s)	279, 963, 1256
NlaIII	CATG	4 cut(s)	516, 591, 669, 707
NlaIV	GGNNCC	1 cut(s)	1258
NmuCI	GTSAC	1 cut(s)	37
NspI	RCATGY	1 cut(s)	669
PceI	AGGCCT	1 cut(s)	855
PdmI	GAANNNNTTC	1 cut(s)	238
PfeI	GAWTC	6 cut(s)	13, 100, 114, 306, 336, 761
PkrI	GCNGC	3 cut(s)	355, 394, 823
PshBI	ATTAAT	1 cut(s)	72
PspFI	CCCAGC	2 cut(s)	423, 542
PspN4I	GGNNCC	1 cut(s)	1258
PspPI	GGNCC	2 cut(s)	259, 629
PstI	CTGCAG	1 cut(s)	397
PstNI	CAGNNNCTG	1 cut(s)	725
PsuI	RGATCY	1 cut(s)	1256
RsaI	GTAC	2 cut(s)	452, 767
RsaNI	GTAC	2 cut(s)	451, 766
RseI	CAYNNNNRTG	1 cut(s)	511
SaqAI	TTAA	4 cut(s)	72, 471, 494, 1245
SatI	GCNGC	3 cut(s)	354, 393, 822
Sau3AI	GATC	3 cut(s)	279, 963, 1256
Sau96I	GGNCC	2 cut(s)	259, 629
SduI	GDGCHC	2 cut(s)	275, 447
SfaNI	GCATC	3 cut(s)	194, 365, 1313
SfcI	CTRYAG	2 cut(s)	393, 1056
SinI	GGWCC	2 cut(s)	259, 629
SmiMI	CAYNNNNRTG	1 cut(s)	511
SmlI	CTYRAG	1 cut(s)	199
SmoI	CTYRAG	1 cut(s)	199
SseBI	AGGCCT	1 cut(s)	855
SsiI	CCGC	3 cut(s)	420, 1260, 1323
SspI	AATATT	2 cut(s)	499, 901
SspMI	CTAG	1 cut(s)	818
StuI	AGGCCT	1 cut(s)	855
StyI	CCWWGG	4 cut(s)	408, 512, 625, 850
TaaI	ACNGT	3 cut(s)	37, 1057, 1213
TfiI	GAWTC	6 cut(s)	13, 100, 114, 306, 336, 761
Tru1I	TTAA	4 cut(s)	72, 471, 494, 1245
Tru9I	TTAA	4 cut(s)	72, 471, 494, 1245
TscAI	CASTG	1 cut(s)	40
TseFI	GTSAC	1 cut(s)	37
TseI	GCWGC	3 cut(s)	353, 392, 821
Tsp45I	GTSAC	1 cut(s)	37
TspDTI	ATGAA	3 cut(s)	601, 1161, 1199
TspRI	CASTG	1 cut(s)	40
VpaK11BI	GGWCC	2 cut(s)	259, 629
VspI	ATTAAT	1 cut(s)	72
XapI	RAATTY	3 cut(s)	213, 234, 949
XceI	RCATGY	1 cut(s)	669
XmnI	GAANNNNTTC	1 cut(s)	238
XspI	CTAG	1 cut(s)	818

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.