Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007318.1

Orthogroup ID

OG0002797

Physical Location & Seq

Genomic Coordinates Forward (+)

2171 .. 4990

Gene Structure 2820 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007318.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

atgtgtggctgcgttttcgtaggcaagaggaaaaggtcagctgaggtggcagcacctcattggctccacaagaaaaagagagtgatctggtgtgctgtggttccaaagcctaaagtcacaaccgcccagctttccttaatctttgggctctggtacttccagaacattgtcttcaatatctacaacaagaaggcactgaatgttttcccattcccatggcttctggcttcctttcagctctttgccgggtctgtctggatgttgatcctctggtctctgaagctccagccatgcccgaaaatctcgaaaccgttcattgttgctctccttggccctgctttgttccacaccataggccacatctcggcctgcgtctcattctctaaggtggctgtgtccttcacccatgtcatcaagtctgcggagcctgtcttttcggtggtgttttcgtcgttcctaggggagacttaccctatacaggtctggctttcgattcttcctattgttatgggttgttctctagctgctgttactgaggtgacattcaatttccaaggcctgtggggggctttaattagcaatgtggggtttgtgttgaggaatatttattcgaaacggagcttacagagctttaaagaagtggatgggttgaatttgtatggttgcatcagtataatttctctgttttatttgtttcctgtggcggttttggttgaagggtcgcaatgggttcaagggtatcatagagctatagcatctgtgggggaaccatctacattttacttttgggtgttgttgtccggagtgttttaccatctgtataaccagtcgagttatcaggctcttgatgagattagccctctgacattctcagttggaaacacaatgaagagggtggtggtgattgtgtctactgtgttggtgttcagaaatccagttagacctcttaatgcacttgggtccgctgtggcgatatttgggacattcttgtattctcaggcaacagctaagaagaaaaaggaagctgaaaagaagaattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006820 GO:0008028 GO:0008150 GO:0008509 GO:0008514 GO:0008643 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0015075 GO:0015120 GO:0015144 GO:0015318 GO:0015605 GO:0015711 GO:0015713 GO:0015717 GO:0015718 GO:0015748 GO:0015849 GO:0022857 GO:0031967 GO:0031975 GO:0034219 GO:0034220 GO:0035436 GO:0042873 GO:0042879 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071917 GO:0098656 GO:1901264 GO:1901505 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

346

Amino Acids

38.63

Weight (kDa)

9.77

Isoelectric Point (pI)

45.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002797)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17630
fragaria_vesca	FvH4_7g07680
malus_domestica	MD02G1233400.v1.1 MD04G1135700.v1.1 MD04G1135800.v1.1 MD07G1080200.v1.1
prunus_persica	Prupe.2G104200_v2.0.a1
pyrus_communis	pycom02g20160 pycom07g06380 pycom12g15330
rosa_chinensis	RchiOBHm_Chr1g0342641 RchiOBHm_Chr2g0089941 RchiOBHm_Chr2g0137951 RchiOBHm_Chr5g0045131 RchiOBHm_Chr5g0045141
rosa_laevigata	RLG00000009883 RLG00000029167 RLG00000029185
rosa_multiflora	Rmu_sc0000539.1_g000061 Rmu_sc0005365.1_g000006 Rmu_sc0007318.1_g000001 Rmu_ssc0000177.1_g000005
rosa_roxburghii	Rroxscaffold_4G00313140 Rroxscaffold_6G00402970
rosa_rugosa	Rorug01G0146900.1 Rorug04G0068400 Rorug04G0068500 Rorug04G0068600 Rorug07G0164400 Rorug07G0164400
rosa_samantha	Rh1AG165200 Rh1AG191600 Rh1BG131300 Rh1CG153800 Rh1DG166400 Rh2BG401800 Rh5BG310600 Rh5DG321000
rosa_wichuraiana	Rw1G013710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	911
AccIII	TCCGGA	1 cut(s)	800
AciI	CCGC	4 cut(s)	123, 422, 704, 963
AclWI	GGATC	1 cut(s)	259
AcsI	RAATTY	1 cut(s)	652
AcuI	CTGAAG	1 cut(s)	299
AfaI	GTAC	1 cut(s)	155
AfiI	CCNNNNNNNGG	3 cut(s)	364, 478, 565
AgsI	TTSAA	5 cut(s)	175, 547, 652, 716, 734
Alw26I	GTCTC	3 cut(s)	279, 379, 458
AlwI	GGATC	1 cut(s)	259
Aor13HI	TCCGGA	1 cut(s)	800
AoxI	GGCC	4 cut(s)	331, 355, 366, 556
ApeKI	GCWGC	3 cut(s)	9, 50, 524
ApoI	RAATTY	1 cut(s)	652
Asp700I	GAANNNNTTC	2 cut(s)	203, 311
AspA2I	CCTAGG	1 cut(s)	457
AspS9I	GGNCC	2 cut(s)	332, 960
AsuC2I	CCSGG	1 cut(s)	247
AsuHPI	GGTGA	3 cut(s)	394, 550, 913
AsuII	TTCGAA	1 cut(s)	611
AvaII	GGWCC	1 cut(s)	960
AvrII	CCTAGG	1 cut(s)	457
BanII	GRGCYC	1 cut(s)	150
BbsI	GAAGAC	1 cut(s)	163
BbvCI	CCTCAGC	1 cut(s)	42
BbvI	GCAGC	2 cut(s)	62, 511
BccI	CCATC	3 cut(s)	638, 778, 822
BcnI	CCSGG	1 cut(s)	247
BcoDI	GTCTC	3 cut(s)	279, 379, 458
BfaI	CTAG	2 cut(s)	458, 521
BfmI	CTRYAG	1 cut(s)	750
BisI	GCNGC	3 cut(s)	10, 51, 525
BlnI	CCTAGG	1 cut(s)	457
BlsI	GCNGC	3 cut(s)	11, 52, 526
Bme1390I	CCNGG	1 cut(s)	247
Bme18I	GGWCC	1 cut(s)	960
BmgT120I	GGNCC	2 cut(s)	332, 960
BmiI	GGNNCC	5 cut(s)	65, 102, 426, 768, 961
BmrFI	CCNGG	1 cut(s)	247
BmsI	GCATC	2 cut(s)	675, 764
BpiI	GAAGAC	1 cut(s)	163
BpmI	CTGGAG	1 cut(s)	269
Bpu10I	CCTNAGC	1 cut(s)	42
Bpu14I	TTCGAA	1 cut(s)	611
BpuMI	CCSGG	1 cut(s)	247
BsaBI	GATNNNNATC	1 cut(s)	263
BsaI	GGTCTC	1 cut(s)	279
BsaJI	CCNNGG	4 cut(s)	215, 328, 457, 553
BsaWI	WCCGGW	1 cut(s)	800
Bsc4I	CCNNNNNNNGG	3 cut(s)	364, 478, 565
Bse1I	ACTGG	2 cut(s)	826, 935
Bse3DI	GCAATG	2 cut(s)	586, 731
Bse8I	GATNNNNATC	1 cut(s)	263
BseAI	TCCGGA	1 cut(s)	800
BseDI	CCNNGG	4 cut(s)	215, 328, 457, 553
BseGI	GGATG	2 cut(s)	264, 649
BseJI	GATNNNNATC	1 cut(s)	263
BseLI	CCNNNNNNNGG	3 cut(s)	364, 478, 565
BseMI	GCAATG	2 cut(s)	586, 731
BseMII	CTCAG	4 cut(s)	33, 525, 885, 1010
BseNI	ACTGG	2 cut(s)	826, 935
BseXI	GCAGC	2 cut(s)	62, 511
BseYI	CCCAGC	1 cut(s)	126
BshFI	GGCC	4 cut(s)	333, 357, 368, 558
BsiSI	CCGG	2 cut(s)	246, 801
BslFI	GGGAC	1 cut(s)	994
BslI	CCNNNNNNNGG	3 cut(s)	364, 478, 565
BsmAI	GTCTC	3 cut(s)	279, 379, 458
BsmBI	CGTCTC	1 cut(s)	379
BsmFI	GGGAC	1 cut(s)	994
BsnI	GGCC	4 cut(s)	333, 357, 368, 558
Bso31I	GGTCTC	1 cut(s)	279
Bsp119I	TTCGAA	1 cut(s)	611
Bsp1286I	GDGCHC	1 cut(s)	150
Bsp13I	TCCGGA	1 cut(s)	800
Bsp143I	GATC	2 cut(s)	84, 264
Bsp19I	CCATGG	1 cut(s)	215
BspACI	CCGC	4 cut(s)	123, 422, 704, 963
BspANI	GGCC	4 cut(s)	333, 357, 368, 558
BspCNI	CTCAG	4 cut(s)	34, 526, 884, 1009
BspEI	TCCGGA	1 cut(s)	800
BspLI	GGNNCC	5 cut(s)	65, 102, 426, 768, 961
BspPI	GGATC	1 cut(s)	259
BspT104I	TTCGAA	1 cut(s)	611
BspTNI	GGTCTC	1 cut(s)	279
BsrDI	GCAATG	2 cut(s)	586, 731
BsrI	ACTGG	2 cut(s)	826, 935
BssECI	CCNNGG	4 cut(s)	215, 328, 457, 553
BssMI	GATC	2 cut(s)	84, 264
BssT1I	CCWWGG	4 cut(s)	215, 328, 457, 553
Bst4CI	ACNGT	2 cut(s)	312, 916
Bst6I	CTCTTC	1 cut(s)	884
BstBI	TTCGAA	1 cut(s)	611
BstC8I	GCNNGC	1 cut(s)	370
BstDEI	CTNAG	6 cut(s)	42, 384, 534, 871, 996, 1008
BstDSI	CCRYGG	1 cut(s)	215
BstF5I	GGATG	2 cut(s)	264, 649
BstKTI	GATC	2 cut(s)	87, 267
BstMAI	GTCTC	3 cut(s)	279, 379, 458
BstMBI	GATC	2 cut(s)	84, 264
BstMWI	GCNNNNNNNGC	2 cut(s)	47, 627
BstSCI	CCNGG	1 cut(s)	245
BstSFI	CTRYAG	1 cut(s)	750
BstV1I	GCAGC	2 cut(s)	62, 511
BstV2I	GAAGAC	1 cut(s)	163
BstXI	CCANNNNNNTGG	1 cut(s)	216
BsuRI	GGCC	4 cut(s)	333, 357, 368, 558
BtgI	CCRYGG	1 cut(s)	215
BtsCI	GGATG	2 cut(s)	264, 649
BtsIMutI	CAGTG	1 cut(s)	194
Cac8I	GCNNGC	1 cut(s)	370
Cfr13I	GGNCC	2 cut(s)	332, 960
CseI	GACGC	1 cut(s)	361
Csp6I	GTAC	1 cut(s)	154
CspCI	CAANNNNNGTGG	2 cut(s)	542, 577
CviAII	CATG	3 cut(s)	216, 291, 407
CviQI	GTAC	1 cut(s)	154
DdeI	CTNAG	6 cut(s)	42, 384, 534, 871, 996, 1008
DpnI	GATC	2 cut(s)	86, 266
DpnII	GATC	2 cut(s)	84, 264
DraI	TTTAAA	1 cut(s)	634
Eam1104I	CTCTTC	1 cut(s)	884
EarI	CTCTTC	1 cut(s)	884
Eco130I	CCWWGG	4 cut(s)	215, 328, 457, 553
Eco147I	AGGCCT	1 cut(s)	558
Eco24I	GRGCYC	1 cut(s)	150
Eco31I	GGTCTC	1 cut(s)	279
Eco47I	GGWCC	1 cut(s)	960
Eco57I	CTGAAG	1 cut(s)	299
EcoT14I	CCWWGG	4 cut(s)	215, 328, 457, 553
EcoT38I	GRGCYC	1 cut(s)	150
ErhI	CCWWGG	4 cut(s)	215, 328, 457, 553
Esp3I	CGTCTC	1 cut(s)	379
FaeI	CATG	3 cut(s)	219, 294, 410
FaqI	GGGAC	1 cut(s)	994
FatI	CATG	3 cut(s)	215, 290, 406
FblI	GTMKAC	1 cut(s)	911
Fnu4HI	GCNGC	3 cut(s)	10, 51, 525
FokI	GGATG	2 cut(s)	271, 656
FriOI	GRGCYC	1 cut(s)	150
Fsp4HI	GCNGC	3 cut(s)	10, 51, 525
FspBI	CTAG	2 cut(s)	458, 521
GluI	GCNGC	3 cut(s)	10, 51, 525
GsaI	CCCAGC	1 cut(s)	130
GsuI	CTGGAG	1 cut(s)	269
HaeIII	GGCC	4 cut(s)	333, 357, 368, 558
HapII	CCGG	2 cut(s)	246, 801
HgaI	GACGC	1 cut(s)	361
Hin1II	CATG	3 cut(s)	219, 294, 410
HinfI	GANTC	1 cut(s)	493
HpaII	CCGG	2 cut(s)	246, 801
HphI	GGTGA	3 cut(s)	394, 550, 913
Hpy166II	GTNNAC	1 cut(s)	912
Hpy188I	TCNGA	3 cut(s)	279, 864, 929
Hpy188III	TCNNGA	5 cut(s)	160, 256, 304, 801, 845
Hpy8I	GTNNAC	1 cut(s)	912
Hpy99I	CGWCG	1 cut(s)	454
HpyAV	CCTTC	3 cut(s)	184, 409, 710
HpyCH4III	ACNGT	2 cut(s)	312, 916
HpyCH4V	TGCA	2 cut(s)	666, 953
HpyF10VI	GCNNNNNNNGC	2 cut(s)	47, 627
HpyF3I	CTNAG	6 cut(s)	42, 384, 534, 871, 996, 1008
Hsp92II	CATG	3 cut(s)	219, 294, 410
Kpn2I	TCCGGA	1 cut(s)	800
Kzo9I	GATC	2 cut(s)	84, 264
LmnI	GCTCC	4 cut(s)	69, 288, 424, 618
Lsp1109I	GCAGC	2 cut(s)	62, 511
LweI	GCATC	2 cut(s)	675, 764
MaeI	CTAG	2 cut(s)	458, 521
MaeIII	GTNAC	3 cut(s)	115, 529, 538
MalI	GATC	2 cut(s)	86, 266
MboI	GATC	2 cut(s)	84, 264
MboII	GAAGA	4 cut(s)	163, 488, 901, 1024
MhlI	GDGCHC	1 cut(s)	150
MluCI	AATT	5 cut(s)	547, 573, 652, 675, 1036
MmeI	TCCRAC	1 cut(s)	856
MnlI	CCTC	9 cut(s)	21, 37, 66, 278, 529, 591, 870, 885, 954
MroI	TCCGGA	1 cut(s)	800
MroXI	GAANNNNTTC	2 cut(s)	203, 311
MseI	TTAA	4 cut(s)	137, 572, 633, 948
MslI	CAYNNNNRTG	1 cut(s)	214
MspA1I	CMGCKG	2 cut(s)	41, 965
MspI	CCGG	2 cut(s)	246, 801
MspR9I	CCNGG	1 cut(s)	247
MwoI	GCNNNNNNNGC	2 cut(s)	47, 627
NciI	CCSGG	1 cut(s)	247
NcoI	CCATGG	1 cut(s)	215
NdeII	GATC	2 cut(s)	84, 264
NlaIII	CATG	3 cut(s)	219, 294, 410
NlaIV	GGNNCC	5 cut(s)	65, 102, 426, 768, 961
NmeAIII	GCCGAG	1 cut(s)	344
NmuCI	GTSAC	2 cut(s)	115, 538
NspV	TTCGAA	1 cut(s)	611
PceI	AGGCCT	1 cut(s)	558
PdmI	GAANNNNTTC	2 cut(s)	203, 311
PfeI	GAWTC	1 cut(s)	493
PkrI	GCNGC	3 cut(s)	11, 52, 526
PspFI	CCCAGC	1 cut(s)	126
PspN4I	GGNNCC	5 cut(s)	65, 102, 426, 768, 961
PspPI	GGNCC	2 cut(s)	332, 960
PvuII	CAGCTG	1 cut(s)	41
RsaI	GTAC	1 cut(s)	155
RsaNI	GTAC	1 cut(s)	154
RseI	CAYNNNNRTG	1 cut(s)	214
SaqAI	TTAA	4 cut(s)	137, 572, 633, 948
SatI	GCNGC	3 cut(s)	10, 51, 525
Sau3AI	GATC	2 cut(s)	84, 264
Sau96I	GGNCC	2 cut(s)	332, 960
ScrFI	CCNGG	1 cut(s)	247
SduI	GDGCHC	1 cut(s)	150
SfaNI	GCATC	2 cut(s)	675, 764
SfcI	CTRYAG	1 cut(s)	750
SfuI	TTCGAA	1 cut(s)	611
SinI	GGWCC	1 cut(s)	960
SmiMI	CAYNNNNRTG	1 cut(s)	214
Sse9I	AATT	5 cut(s)	547, 573, 652, 675, 1036
SseBI	AGGCCT	1 cut(s)	558
SsiI	CCGC	4 cut(s)	123, 422, 704, 963
SspI	AATATT	1 cut(s)	604
SspMI	CTAG	2 cut(s)	458, 521
StuI	AGGCCT	1 cut(s)	558
StyD4I	CCNGG	1 cut(s)	245
StyI	CCWWGG	4 cut(s)	215, 328, 457, 553
TaaI	ACNGT	2 cut(s)	312, 916
TaqI	TCGA	4 cut(s)	305, 491, 611, 830
TasI	AATT	5 cut(s)	547, 573, 652, 675, 1036
TfiI	GAWTC	1 cut(s)	493
Tru1I	TTAA	4 cut(s)	137, 572, 633, 948
Tru9I	TTAA	4 cut(s)	137, 572, 633, 948
TscAI	CASTG	1 cut(s)	201
TseFI	GTSAC	2 cut(s)	115, 538
TseI	GCWGC	3 cut(s)	9, 50, 524
Tsp45I	GTSAC	2 cut(s)	115, 538
TspDTI	ATGAA	2 cut(s)	304, 902
TspGWI	ACGGA	1 cut(s)	631
TspRI	CASTG	1 cut(s)	201
VpaK11BI	GGWCC	1 cut(s)	960
XapI	RAATTY	1 cut(s)	652
XmaJI	CCTAGG	1 cut(s)	457
XmiI	GTMKAC	1 cut(s)	911
XmnI	GAANNNNTTC	2 cut(s)	203, 311
XspI	CTAG	2 cut(s)	458, 521

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.