Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0002797

Physical Location & Seq

Genomic Coordinates Reverse (-)

18308364 .. 18310692

Gene Structure 2329 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g20160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGCTTACCTTGAATCTCAGTTGTCCTTCTTCCCCTGTCACTTTCTCCAAATCCCGCCATCAACTCCCCTCTATTAATGCCTCCTTCTCCCCCTCACCCTCCTCCTCTTCACTTCTCACTAGAATCCAAACGCACTCATATCCTCTGCACCAACAACCCACCTCTCTCAGACCCCAAACATCCCCCAAATTCTCCAAATTCTCAAGCTTTACCAGAATCTATGGCCACCCATTTGGAATTTCGTCAAAAGAAACAAAATCCATGTGCCAGATTCGAGGTTCGAGCTCAAAGATCAGCCATTTGAGCGAAGCCTGTGAATTCCTATCTAGGTTTGGGAGAAAACCCAGGTCCCAAATCCCAAAAGCTGCTTCTCAATCCAATACAGGAGGAGAAACTGAAGCTGCAGTCTCAAAGCCCAAGGCCACCACCGCCCAGCTCGCGCTTATTTTTGGGCTATGGTACTTCCAGAACATTGTCTTCAACGTCTACAACAAGAAGGTACTGAATCTGATCTTCGTAGATGTATGTTTGATACCGCTTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006820 GO:0008028 GO:0008150 GO:0008509 GO:0008514 GO:0008643 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0015075 GO:0015120 GO:0015144 GO:0015318 GO:0015605 GO:0015711 GO:0015713 GO:0015717 GO:0015718 GO:0015748 GO:0015849 GO:0022857 GO:0031967 GO:0031975 GO:0034219 GO:0034220 GO:0035436 GO:0042873 GO:0042879 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071917 GO:0098656 GO:1901264 GO:1901505 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

182

Amino Acids

19.97

Weight (kDa)

10.13

Isoelectric Point (pI)

59.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPT	PF03151	145 - 171	5.2e-06	Triose-phosphate Transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002797)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17630
fragaria_vesca	FvH4_7g07680
malus_domestica	MD02G1233400.v1.1 MD04G1135700.v1.1 MD04G1135800.v1.1 MD07G1080200.v1.1
prunus_persica	Prupe.2G104200_v2.0.a1
pyrus_communis	pycom02g20160 pycom07g06380 pycom12g15330
rosa_chinensis	RchiOBHm_Chr1g0342641 RchiOBHm_Chr2g0089941 RchiOBHm_Chr2g0137951 RchiOBHm_Chr5g0045131 RchiOBHm_Chr5g0045141
rosa_laevigata	RLG00000009883 RLG00000029167 RLG00000029185
rosa_multiflora	Rmu_sc0000539.1_g000061 Rmu_sc0005365.1_g000006 Rmu_sc0007318.1_g000001 Rmu_ssc0000177.1_g000005
rosa_roxburghii	Rroxscaffold_4G00313140 Rroxscaffold_6G00402970
rosa_rugosa	Rorug01G0146900.1 Rorug04G0068400 Rorug04G0068500 Rorug04G0068600 Rorug07G0164400 Rorug07G0164400
rosa_samantha	Rh1AG165200 Rh1AG191600 Rh1BG131300 Rh1CG153800 Rh1DG166400 Rh2BG401800 Rh5BG310600 Rh5DG321000
rosa_wichuraiana	Rw1G013710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	486
AccII	CGCG	1 cut(s)	440
AciI	CCGC	3 cut(s)	55, 429, 536
AcoI	YGGCCR	1 cut(s)	223
AcsI	RAATTY	4 cut(s)	188, 197, 237, 317
AcuI	CTGAAG	1 cut(s)	417
AfaI	GTAC	2 cut(s)	461, 501
AgsI	TTSAA	2 cut(s)	13, 481
AjnI	CCWGG	1 cut(s)	344
AjuI	GAANNNNNNNTTGG	2 cut(s)	352, 384
AluBI	AGCT	5 cut(s)	207, 285, 365, 401, 436
AluI	AGCT	5 cut(s)	207, 285, 365, 401, 436
Alw21I	GWGCWC	1 cut(s)	287
Alw26I	GTCTC	1 cut(s)	412
AoxI	GGCC	2 cut(s)	223, 420
ApeKI	GCWGC	2 cut(s)	365, 401
ApoI	RAATTY	4 cut(s)	188, 197, 237, 317
AseI	ATTAAT	1 cut(s)	75
AspLEI	GCGC	1 cut(s)	442
AspS9I	GGNCC	1 cut(s)	348
AsuHPI	GGTGA	1 cut(s)	87
AvaII	GGWCC	1 cut(s)	348
BalI	TGGCCA	1 cut(s)	225
BanII	GRGCYC	1 cut(s)	287
BbsI	GAAGAC	1 cut(s)	469
Bbv12I	GWGCWC	1 cut(s)	287
BbvI	GCAGC	2 cut(s)	352, 388
BccI	CCATC	1 cut(s)	66
BciT130I	CCWGG	1 cut(s)	346
BcoDI	GTCTC	1 cut(s)	412
BfaI	CTAG	2 cut(s)	120, 327
BfmI	CTRYAG	1 cut(s)	402
BisI	GCNGC	2 cut(s)	366, 402
BlsI	GCNGC	2 cut(s)	367, 403
Bme1390I	CCNGG	1 cut(s)	346
Bme18I	GGWCC	1 cut(s)	348
BmgT120I	GGNCC	1 cut(s)	348
BmiI	GGNNCC	1 cut(s)	350
BmrFI	CCNGG	1 cut(s)	346
BpiI	GAAGAC	1 cut(s)	469
BpuEI	CTTGAG	1 cut(s)	187
BsaJI	CCNNGG	2 cut(s)	344, 417
BseBI	CCWGG	1 cut(s)	346
BseDI	CCNNGG	2 cut(s)	344, 417
BseGI	GGATG	1 cut(s)	179
BseMII	CTCAG	2 cut(s)	31, 181
BseRI	GAGGAG	3 cut(s)	91, 94, 402
BseXI	GCAGC	2 cut(s)	352, 388
BseYI	CCCAGC	1 cut(s)	432
BsgI	GTGCAG	1 cut(s)	131
Bsh1236I	CGCG	1 cut(s)	440
BshFI	GGCC	2 cut(s)	225, 422
BsiHKAI	GWGCWC	1 cut(s)	287
BslFI	GGGAC	1 cut(s)	334
BsmAI	GTCTC	1 cut(s)	412
BsmFI	GGGAC	1 cut(s)	334
BsnI	GGCC	2 cut(s)	225, 422
Bsp1286I	GDGCHC	1 cut(s)	287
Bsp143I	GATC	2 cut(s)	291, 510
BspACI	CCGC	3 cut(s)	55, 429, 536
BspANI	GGCC	2 cut(s)	225, 422
BspCNI	CTCAG	2 cut(s)	30, 180
BspFNI	CGCG	1 cut(s)	440
BspLI	GGNNCC	1 cut(s)	350
BspMAI	CTGCAG	1 cut(s)	406
BssECI	CCNNGG	2 cut(s)	344, 417
BssMI	GATC	2 cut(s)	291, 510
BssT1I	CCWWGG	1 cut(s)	417
Bst2UI	CCWGG	1 cut(s)	346
Bst6I	CTCTTC	1 cut(s)	112
BstC8I	GCNNGC	1 cut(s)	438
BstDEI	CTNAG	2 cut(s)	17, 167
BstF5I	GGATG	1 cut(s)	179
BstFNI	CGCG	1 cut(s)	440
BstHHI	GCGC	1 cut(s)	442
BstKTI	GATC	2 cut(s)	294, 513
BstMAI	GTCTC	1 cut(s)	412
BstMBI	GATC	2 cut(s)	291, 510
BstMWI	GCNNNNNNNGC	3 cut(s)	303, 428, 437
BstNI	CCWGG	1 cut(s)	346
BstSCI	CCNGG	1 cut(s)	344
BstSFI	CTRYAG	1 cut(s)	402
BstUI	CGCG	1 cut(s)	440
BstV1I	GCAGC	2 cut(s)	352, 388
BstV2I	GAAGAC	1 cut(s)	469
BstXI	CCANNNNNNTGG	1 cut(s)	233
BsuRI	GGCC	2 cut(s)	225, 422
BtsCI	GGATG	1 cut(s)	179
Cac8I	GCNNGC	1 cut(s)	438
CfoI	GCGC	1 cut(s)	442
Cfr13I	GGNCC	1 cut(s)	348
Csp6I	GTAC	2 cut(s)	460, 500
CviAII	CATG	1 cut(s)	262
CviQI	GTAC	2 cut(s)	460, 500
DdeI	CTNAG	2 cut(s)	17, 167
DpnI	GATC	2 cut(s)	293, 512
DpnII	GATC	2 cut(s)	291, 510
EaeI	YGGCCR	1 cut(s)	223
Eam1104I	CTCTTC	1 cut(s)	112
EarI	CTCTTC	1 cut(s)	112
Ecl136II	GAGCTC	1 cut(s)	285
Eco130I	CCWWGG	1 cut(s)	417
Eco24I	GRGCYC	1 cut(s)	287
Eco47I	GGWCC	1 cut(s)	348
Eco53kI	GAGCTC	1 cut(s)	285
Eco57I	CTGAAG	1 cut(s)	417
EcoICRI	GAGCTC	1 cut(s)	285
EcoO109I	RGGNCCY	1 cut(s)	348
EcoRI	GAATTC	1 cut(s)	317
EcoRII	CCWGG	1 cut(s)	344
EcoT14I	CCWWGG	1 cut(s)	417
EcoT38I	GRGCYC	1 cut(s)	287
ErhI	CCWWGG	1 cut(s)	417
FaeI	CATG	1 cut(s)	265
FaiI	YATR	5 cut(s)	139, 222, 263, 457, 526
FaqI	GGGAC	1 cut(s)	334
FatI	CATG	1 cut(s)	261
FauI	CCCGC	1 cut(s)	62
FblI	GTMKAC	1 cut(s)	486
Fnu4HI	GCNGC	2 cut(s)	366, 402
FokI	GGATG	1 cut(s)	166
FriOI	GRGCYC	1 cut(s)	287
Fsp4HI	GCNGC	2 cut(s)	366, 402
FspBI	CTAG	2 cut(s)	120, 327
GlaI	GCGC	1 cut(s)	441
GluI	GCNGC	2 cut(s)	366, 402
GsaI	CCCAGC	1 cut(s)	436
HaeIII	GGCC	2 cut(s)	225, 422
HhaI	GCGC	1 cut(s)	442
Hin1II	CATG	1 cut(s)	265
Hin6I	GCGC	1 cut(s)	440
HinP1I	GCGC	1 cut(s)	440
HindIII	AAGCTT	1 cut(s)	205
HinfI	GANTC	5 cut(s)	13, 123, 216, 271, 505
HphI	GGTGA	1 cut(s)	87
Hpy166II	GTNNAC	1 cut(s)	487
Hpy188I	TCNGA	2 cut(s)	170, 510
Hpy188III	TCNNGA	1 cut(s)	466
Hpy8I	GTNNAC	1 cut(s)	487
HpyAV	CCTTC	3 cut(s)	36, 94, 490
HpyCH4IV	ACGT	1 cut(s)	483
HpyCH4V	TGCA	2 cut(s)	148, 404
HpyF10VI	GCNNNNNNNGC	3 cut(s)	303, 428, 437
HpyF3I	CTNAG	2 cut(s)	17, 167
HpySE526I	ACGT	1 cut(s)	483
Hsp92II	CATG	1 cut(s)	265
HspAI	GCGC	1 cut(s)	440
Kzo9I	GATC	2 cut(s)	291, 510
LpnPI	CCDG	9 cut(s)	48, 226, 281, 325, 331, 358, 369, 446, 479
Lsp1109I	GCAGC	2 cut(s)	352, 388
MaeI	CTAG	2 cut(s)	120, 327
MaeII	ACGT	1 cut(s)	483
MaeIII	GTNAC	1 cut(s)	37
MalI	GATC	2 cut(s)	293, 512
MboI	GATC	2 cut(s)	291, 510
MboII	GAAGA	4 cut(s)	21, 99, 469, 505
MhlI	GDGCHC	1 cut(s)	287
MlsI	TGGCCA	1 cut(s)	225
MluCI	AATT	4 cut(s)	188, 197, 237, 317
MluNI	TGGCCA	1 cut(s)	225
Mox20I	TGGCCA	1 cut(s)	225
MscI	TGGCCA	1 cut(s)	225
MseI	TTAA	1 cut(s)	75
Msp20I	TGGCCA	1 cut(s)	225
MspR9I	CCNGG	1 cut(s)	346
MvaI	CCWGG	1 cut(s)	346
MvnI	CGCG	1 cut(s)	440
MwoI	GCNNNNNNNGC	3 cut(s)	303, 428, 437
NdeII	GATC	2 cut(s)	291, 510
NlaIII	CATG	1 cut(s)	265
NlaIV	GGNNCC	1 cut(s)	350
NmuCI	GTSAC	1 cut(s)	37
PfeI	GAWTC	5 cut(s)	13, 123, 216, 271, 505
PkrI	GCNGC	2 cut(s)	367, 403
PpuMI	RGGWCCY	1 cut(s)	348
PshBI	ATTAAT	1 cut(s)	75
Psp124BI	GAGCTC	1 cut(s)	287
Psp5II	RGGWCCY	1 cut(s)	348
Psp6I	CCWGG	1 cut(s)	344
PspFI	CCCAGC	1 cut(s)	432
PspGI	CCWGG	1 cut(s)	344
PspN4I	GGNNCC	1 cut(s)	350
PspPI	GGNCC	1 cut(s)	348
PspPPI	RGGWCCY	1 cut(s)	348
PstI	CTGCAG	1 cut(s)	406
RsaI	GTAC	2 cut(s)	461, 501
RsaNI	GTAC	2 cut(s)	460, 500
SacI	GAGCTC	1 cut(s)	287
SaqAI	TTAA	1 cut(s)	75
SatI	GCNGC	2 cut(s)	366, 402
Sau3AI	GATC	2 cut(s)	291, 510
Sau96I	GGNCC	1 cut(s)	348
ScrFI	CCNGG	1 cut(s)	346
SduI	GDGCHC	1 cut(s)	287
SfcI	CTRYAG	1 cut(s)	402
SinI	GGWCC	1 cut(s)	348
SmlI	CTYRAG	1 cut(s)	202
SmoI	CTYRAG	1 cut(s)	202
Sse9I	AATT	4 cut(s)	188, 197, 237, 317
SsiI	CCGC	3 cut(s)	55, 429, 536
SspMI	CTAG	2 cut(s)	120, 327
SstI	GAGCTC	1 cut(s)	287
StyD4I	CCNGG	1 cut(s)	344
StyI	CCWWGG	1 cut(s)	417
TaiI	ACGT	1 cut(s)	486
TaqI	TCGA	2 cut(s)	274, 281
TasI	AATT	4 cut(s)	188, 197, 237, 317
TfiI	GAWTC	5 cut(s)	13, 123, 216, 271, 505
Tru1I	TTAA	1 cut(s)	75
Tru9I	TTAA	1 cut(s)	75
TseFI	GTSAC	1 cut(s)	37
TseI	GCWGC	2 cut(s)	365, 401
Tsp45I	GTSAC	1 cut(s)	37
VpaK11BI	GGWCC	1 cut(s)	348
VspI	ATTAAT	1 cut(s)	75
XapI	RAATTY	4 cut(s)	188, 197, 237, 317
XmiI	GTMKAC	1 cut(s)	486
XspI	CTAG	2 cut(s)	120, 327

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.