Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0002797

Physical Location & Seq

Genomic Coordinates Reverse (-)

36354225 .. 36355978

Gene Structure 1754 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00313140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1257 bp

ATGCTTACCCTGAATCTCAACAGTCCTTCCATCACTGTCACTCTCTCCAAATCCACCCATCACTACCCCATCAATGCCTCCCCCTCTTCTCTCCCCAACACAAGATTCCCCACCTCATCTGTTCTGCTCCACACACCCACCAAACCTTTCACCAGAATCTATGCCCACCCATTTGGATTCTCCTCAAAACCCACTTCCCAGATCCATGCTTTGAACCCAAAGTTCCCTTCTTTGTTCTCCTCCAAACCCAGATCCCACACCCCAAAAGCTTCTTCTGCATCAGAAGCCAACCCCAATGGAGGTATTGAACCCACAGTTCCAAAGCCTAAAGTCACAACCGCCCAGCTTGCCTTGATCTTTGGGCTCTGGTACTTCCAGAACATTGTCTTCAATATCTACAACAAGAAGGCATTGAATGTTTTCCCATTCCCATGGCTTCTGGCTTCGTTTCAGCTCTTTGCCGGGTCCGTCTGGATGTTGGTCCTCTGGTCTCTGAAGCTCCAGCCATGCCCGAAAATCTCGAAACCGTTCATTGTTGCTCTCCTCGGCCCTGCATTGTTCCACACCATAGGCCACATCTCGGCCTGCGTATCATTCTCTAAGGTCGCTGTGTCCTTCACCCATGTCATCAAGTCTGCGGAGCCTGTCTTTTCGGTGGTGTTTTCGTCGTTCCTAGGGGAGACTTACCCTATACAGGTCTGGCTTTCGATTCTTCCTATTGTTATGGGTTGTTCTCTAGCTGCTGTTACTGAGGTGACATTCAATTTGCAAGGCCTGTGGGGGGCTTTAATTAGCAATGTGGGGTTTGTGTTGAGGAATATTTATTCGAAACGGAGCTTGCAGAGCTTTAAAGAAGTGGATGGGTTGAATTTGTATGGTTGCATCAGTATAATTTCTCTGTTCTATTTGTTTCCTGTGGCGGTTTTGGTTGAAGGGTCGCAATGGGTTCAAGGGTATCATAGAGCTATAGCATCTGTGGGGGAACCATCCACATTTTACTTTTGGGTGTTGTTGTCTGGAGTGTTTTACCATCTGTATAACCAGTCGAGTTATCAGGCTCTTGATGAGATTAGCCCTCTGACATTCTCAGTTGGAAACACAATGAAGAGGGTGGTGGTGATTGTGTCTACTGTGTTGGTGTTCAGAAATCCAGTTAGACCTCTTAATGCACTTGGGTCCGCTGTGGCGATATTTGGGACATTCTTGTATTCTCAGGCAACAGCTAAGAAGAAAAAGGAAGCTGAAAAGAAGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006820 GO:0008028 GO:0008150 GO:0008509 GO:0008514 GO:0008643 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0015075 GO:0015120 GO:0015144 GO:0015318 GO:0015605 GO:0015711 GO:0015713 GO:0015717 GO:0015718 GO:0015748 GO:0015849 GO:0022857 GO:0031967 GO:0031975 GO:0034219 GO:0034220 GO:0035436 GO:0042873 GO:0042879 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071917 GO:0098656 GO:1901264 GO:1901505 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

418

Amino Acids

46.08

Weight (kDa)

9.84

Isoelectric Point (pI)

47.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPT	PF03151	115 - 404	3.4e-115	Triose-phosphate Transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002797)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17630
fragaria_vesca	FvH4_7g07680
malus_domestica	MD02G1233400.v1.1 MD04G1135700.v1.1 MD04G1135800.v1.1 MD07G1080200.v1.1
prunus_persica	Prupe.2G104200_v2.0.a1
pyrus_communis	pycom02g20160 pycom07g06380 pycom12g15330
rosa_chinensis	RchiOBHm_Chr1g0342641 RchiOBHm_Chr2g0089941 RchiOBHm_Chr2g0137951 RchiOBHm_Chr5g0045131 RchiOBHm_Chr5g0045141
rosa_laevigata	RLG00000009883 RLG00000029167 RLG00000029185
rosa_multiflora	Rmu_sc0000539.1_g000061 Rmu_sc0005365.1_g000006 Rmu_sc0007318.1_g000001 Rmu_ssc0000177.1_g000005
rosa_roxburghii	Rroxscaffold_4G00313140 Rroxscaffold_6G00402970
rosa_rugosa	Rorug01G0146900.1 Rorug04G0068400 Rorug04G0068500 Rorug04G0068600 Rorug07G0164400 Rorug07G0164400
rosa_samantha	Rh1AG165200 Rh1AG191600 Rh1BG131300 Rh1CG153800 Rh1DG166400 Rh2BG401800 Rh5BG310600 Rh5DG321000
rosa_wichuraiana	Rw1G013710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	1127
AciI	CCGC	4 cut(s)	339, 638, 920, 1179
AclWI	GGATC	2 cut(s)	196, 246
AcsI	RAATTY	1 cut(s)	868
AcuI	CTGAAG	1 cut(s)	515
AfaI	GTAC	1 cut(s)	371
AfiI	CCNNNNNNNGG	4 cut(s)	299, 580, 694, 781
AgsI	TTSAA	8 cut(s)	214, 308, 391, 415, 763, 868, 932, 950
AjuI	GAANNNNNNNTTGG	6 cut(s)	89, 121, 211, 243, 256, 288
Alw26I	GTCTC	2 cut(s)	495, 674
AlwI	GGATC	2 cut(s)	196, 246
AoxI	GGCC	4 cut(s)	547, 571, 582, 772
ApeKI	GCWGC	1 cut(s)	740
ApoI	RAATTY	1 cut(s)	868
ArsI	GACNNNNNNTTYG	2 cut(s)	748, 780
Asp700I	GAANNNNTTC	2 cut(s)	419, 527
AspA2I	CCTAGG	1 cut(s)	673
AspS9I	GGNCC	4 cut(s)	465, 481, 548, 1176
AsuC2I	CCSGG	1 cut(s)	463
AsuHPI	GGTGA	4 cut(s)	142, 610, 766, 1129
AsuII	TTCGAA	1 cut(s)	827
AvaII	GGWCC	3 cut(s)	465, 481, 1176
AvrII	CCTAGG	1 cut(s)	673
BanII	GRGCYC	1 cut(s)	366
BbsI	GAAGAC	1 cut(s)	379
BbvI	GCAGC	1 cut(s)	727
BccI	CCATC	6 cut(s)	38, 66, 77, 854, 994, 1038
BcnI	CCSGG	1 cut(s)	463
BcoDI	GTCTC	2 cut(s)	495, 674
BfaI	CTAG	2 cut(s)	674, 737
BfmI	CTRYAG	1 cut(s)	966
BisI	GCNGC	1 cut(s)	741
BlnI	CCTAGG	1 cut(s)	673
BlsI	GCNGC	1 cut(s)	742
Bme1390I	CCNGG	1 cut(s)	463
Bme18I	GGWCC	3 cut(s)	465, 481, 1176
BmgT120I	GGNCC	4 cut(s)	465, 481, 548, 1176
BmiI	GGNNCC	4 cut(s)	466, 642, 984, 1177
BmrFI	CCNGG	1 cut(s)	463
BmsI	GCATC	3 cut(s)	287, 891, 980
BpiI	GAAGAC	1 cut(s)	379
BpmI	CTGGAG	2 cut(s)	485, 1038
Bpu14I	TTCGAA	1 cut(s)	827
BpuMI	CCSGG	1 cut(s)	463
BsaI	GGTCTC	1 cut(s)	495
BsaJI	CCNNGG	3 cut(s)	431, 544, 673
Bsc4I	CCNNNNNNNGG	4 cut(s)	299, 580, 694, 781
Bse1I	ACTGG	2 cut(s)	1042, 1151
Bse3DI	GCAATG	2 cut(s)	802, 947
BseDI	CCNNGG	3 cut(s)	431, 544, 673
BseGI	GGATG	3 cut(s)	480, 865, 986
BseLI	CCNNNNNNNGG	4 cut(s)	299, 580, 694, 781
BseMI	GCAATG	2 cut(s)	802, 947
BseMII	CTCAG	3 cut(s)	741, 1101, 1226
BseNI	ACTGG	2 cut(s)	1042, 1151
BseRI	GAGGAG	3 cut(s)	172, 229, 533
BseXI	GCAGC	1 cut(s)	727
BseYI	CCCAGC	1 cut(s)	342
BshFI	GGCC	4 cut(s)	549, 573, 584, 774
BsiSI	CCGG	1 cut(s)	462
BslFI	GGGAC	1 cut(s)	1210
BslI	CCNNNNNNNGG	4 cut(s)	299, 580, 694, 781
BsmAI	GTCTC	2 cut(s)	495, 674
BsmFI	GGGAC	1 cut(s)	1210
BsnI	GGCC	4 cut(s)	549, 573, 584, 774
Bso31I	GGTCTC	1 cut(s)	495
Bsp119I	TTCGAA	1 cut(s)	827
Bsp1286I	GDGCHC	1 cut(s)	366
Bsp143I	GATC	3 cut(s)	201, 251, 354
Bsp19I	CCATGG	1 cut(s)	431
BspACI	CCGC	4 cut(s)	339, 638, 920, 1179
BspANI	GGCC	4 cut(s)	549, 573, 584, 774
BspCNI	CTCAG	3 cut(s)	742, 1100, 1225
BspLI	GGNNCC	4 cut(s)	466, 642, 984, 1177
BspPI	GGATC	2 cut(s)	196, 246
BspT104I	TTCGAA	1 cut(s)	827
BspTNI	GGTCTC	1 cut(s)	495
BsrDI	GCAATG	2 cut(s)	802, 947
BsrI	ACTGG	2 cut(s)	1042, 1151
BssECI	CCNNGG	3 cut(s)	431, 544, 673
BssMI	GATC	3 cut(s)	201, 251, 354
BssT1I	CCWWGG	2 cut(s)	431, 673
Bst4CI	ACNGT	5 cut(s)	23, 37, 316, 528, 1132
Bst6I	CTCTTC	2 cut(s)	91, 1100
BstBI	TTCGAA	1 cut(s)	827
BstC8I	GCNNGC	3 cut(s)	348, 586, 839
BstDEI	CTNAG	5 cut(s)	600, 750, 1087, 1212, 1224
BstDSI	CCRYGG	1 cut(s)	431
BstF5I	GGATG	3 cut(s)	480, 865, 986
BstKTI	GATC	3 cut(s)	204, 254, 357
BstMAI	GTCTC	2 cut(s)	495, 674
BstMBI	GATC	3 cut(s)	201, 251, 354
BstMWI	GCNNNNNNNGC	4 cut(s)	275, 284, 347, 843
BstSCI	CCNGG	1 cut(s)	461
BstSFI	CTRYAG	1 cut(s)	966
BstV1I	GCAGC	1 cut(s)	727
BstV2I	GAAGAC	1 cut(s)	379
BstX2I	RGATCY	2 cut(s)	201, 251
BstXI	CCANNNNNNTGG	2 cut(s)	173, 432
BstYI	RGATCY	2 cut(s)	201, 251
BsuRI	GGCC	4 cut(s)	549, 573, 584, 774
BtgI	CCRYGG	1 cut(s)	431
BtsCI	GGATG	3 cut(s)	480, 865, 986
BtsIMutI	CAGTG	1 cut(s)	33
Cac8I	GCNNGC	3 cut(s)	348, 586, 839
Cfr13I	GGNCC	4 cut(s)	465, 481, 548, 1176
Csp6I	GTAC	1 cut(s)	370
CspCI	CAANNNNNGTGG	2 cut(s)	758, 793
CviAII	CATG	4 cut(s)	206, 432, 507, 623
CviQI	GTAC	1 cut(s)	370
DdeI	CTNAG	5 cut(s)	600, 750, 1087, 1212, 1224
DpnI	GATC	3 cut(s)	203, 253, 356
DpnII	GATC	3 cut(s)	201, 251, 354
DraI	TTTAAA	1 cut(s)	850
Eam1104I	CTCTTC	2 cut(s)	91, 1100
EarI	CTCTTC	2 cut(s)	91, 1100
Eco130I	CCWWGG	2 cut(s)	431, 673
Eco147I	AGGCCT	1 cut(s)	774
Eco24I	GRGCYC	1 cut(s)	366
Eco31I	GGTCTC	1 cut(s)	495
Eco47I	GGWCC	3 cut(s)	465, 481, 1176
Eco57I	CTGAAG	1 cut(s)	515
EcoT14I	CCWWGG	2 cut(s)	431, 673
EcoT38I	GRGCYC	1 cut(s)	366
ErhI	CCWWGG	2 cut(s)	431, 673
FaeI	CATG	4 cut(s)	209, 435, 510, 626
FaqI	GGGAC	1 cut(s)	1210
FatI	CATG	4 cut(s)	205, 431, 506, 622
FblI	GTMKAC	1 cut(s)	1127
Fnu4HI	GCNGC	1 cut(s)	741
FokI	GGATG	3 cut(s)	487, 872, 973
FriOI	GRGCYC	1 cut(s)	366
Fsp4HI	GCNGC	1 cut(s)	741
FspBI	CTAG	2 cut(s)	674, 737
GluI	GCNGC	1 cut(s)	741
GsaI	CCCAGC	1 cut(s)	346
GsuI	CTGGAG	2 cut(s)	485, 1038
HaeIII	GGCC	4 cut(s)	549, 573, 584, 774
HapII	CCGG	1 cut(s)	462
Hin1II	CATG	4 cut(s)	209, 435, 510, 626
HindIII	AAGCTT	1 cut(s)	267
HinfI	GANTC	5 cut(s)	13, 105, 156, 177, 709
HpaII	CCGG	1 cut(s)	462
HphI	GGTGA	4 cut(s)	142, 610, 766, 1129
Hpy166II	GTNNAC	1 cut(s)	1128
Hpy188I	TCNGA	4 cut(s)	283, 495, 1080, 1145
Hpy188III	TCNNGA	5 cut(s)	376, 472, 520, 1017, 1061
Hpy8I	GTNNAC	1 cut(s)	1128
Hpy99I	CGWCG	1 cut(s)	670
HpyAV	CCTTC	5 cut(s)	36, 237, 400, 625, 926
HpyCH4III	ACNGT	5 cut(s)	23, 37, 316, 528, 1132
HpyCH4V	TGCA	6 cut(s)	278, 554, 769, 841, 882, 1169
HpyF10VI	GCNNNNNNNGC	4 cut(s)	275, 284, 347, 843
HpyF3I	CTNAG	5 cut(s)	600, 750, 1087, 1212, 1224
Hsp92II	CATG	4 cut(s)	209, 435, 510, 626
Kzo9I	GATC	3 cut(s)	201, 251, 354
LmnI	GCTCC	4 cut(s)	132, 504, 640, 834
Lsp1109I	GCAGC	1 cut(s)	727
LweI	GCATC	3 cut(s)	287, 891, 980
MaeI	CTAG	2 cut(s)	674, 737
MaeIII	GTNAC	4 cut(s)	37, 331, 745, 754
MalI	GATC	3 cut(s)	203, 253, 356
MboI	GATC	3 cut(s)	201, 251, 354
MboII	GAAGA	6 cut(s)	78, 264, 379, 704, 1117, 1240
MflI	RGATCY	2 cut(s)	201, 251
MhlI	GDGCHC	1 cut(s)	366
MluCI	AATT	5 cut(s)	763, 789, 868, 891, 1252
MmeI	TCCRAC	1 cut(s)	1072
MroXI	GAANNNNTTC	2 cut(s)	419, 527
MseI	TTAA	3 cut(s)	788, 849, 1164
MslI	CAYNNNNRTG	1 cut(s)	430
MspA1I	CMGCKG	1 cut(s)	1181
MspI	CCGG	1 cut(s)	462
MspR9I	CCNGG	1 cut(s)	463
MwoI	GCNNNNNNNGC	4 cut(s)	275, 284, 347, 843
NciI	CCSGG	1 cut(s)	463
NcoI	CCATGG	1 cut(s)	431
NdeII	GATC	3 cut(s)	201, 251, 354
NlaIII	CATG	4 cut(s)	209, 435, 510, 626
NlaIV	GGNNCC	4 cut(s)	466, 642, 984, 1177
NmeAIII	GCCGAG	2 cut(s)	525, 560
NmuCI	GTSAC	3 cut(s)	37, 331, 754
NspV	TTCGAA	1 cut(s)	827
PceI	AGGCCT	1 cut(s)	774
PdmI	GAANNNNTTC	2 cut(s)	419, 527
PfeI	GAWTC	5 cut(s)	13, 105, 156, 177, 709
PkrI	GCNGC	1 cut(s)	742
PspFI	CCCAGC	1 cut(s)	342
PspN4I	GGNNCC	4 cut(s)	466, 642, 984, 1177
PspPI	GGNCC	4 cut(s)	465, 481, 548, 1176
PsuI	RGATCY	2 cut(s)	201, 251
RsaI	GTAC	1 cut(s)	371
RsaNI	GTAC	1 cut(s)	370
RseI	CAYNNNNRTG	1 cut(s)	430
SaqAI	TTAA	3 cut(s)	788, 849, 1164
SatI	GCNGC	1 cut(s)	741
Sau3AI	GATC	3 cut(s)	201, 251, 354
Sau96I	GGNCC	4 cut(s)	465, 481, 548, 1176
ScrFI	CCNGG	1 cut(s)	463
SduI	GDGCHC	1 cut(s)	366
SfaNI	GCATC	3 cut(s)	287, 891, 980
SfcI	CTRYAG	1 cut(s)	966
SfuI	TTCGAA	1 cut(s)	827
SinI	GGWCC	3 cut(s)	465, 481, 1176
SmiMI	CAYNNNNRTG	1 cut(s)	430
Sse9I	AATT	5 cut(s)	763, 789, 868, 891, 1252
SseBI	AGGCCT	1 cut(s)	774
SsiI	CCGC	4 cut(s)	339, 638, 920, 1179
SspI	AATATT	1 cut(s)	820
SspMI	CTAG	2 cut(s)	674, 737
StuI	AGGCCT	1 cut(s)	774
StyD4I	CCNGG	1 cut(s)	461
StyI	CCWWGG	2 cut(s)	431, 673
TaaI	ACNGT	5 cut(s)	23, 37, 316, 528, 1132
TaqI	TCGA	4 cut(s)	521, 707, 827, 1046
TasI	AATT	5 cut(s)	763, 789, 868, 891, 1252
TfiI	GAWTC	5 cut(s)	13, 105, 156, 177, 709
Tru1I	TTAA	3 cut(s)	788, 849, 1164
Tru9I	TTAA	3 cut(s)	788, 849, 1164
TscAI	CASTG	1 cut(s)	40
TseFI	GTSAC	3 cut(s)	37, 331, 754
TseI	GCWGC	1 cut(s)	740
Tsp45I	GTSAC	3 cut(s)	37, 331, 754
TspDTI	ATGAA	2 cut(s)	520, 1118
TspGWI	ACGGA	2 cut(s)	457, 847
TspRI	CASTG	1 cut(s)	40
VpaK11BI	GGWCC	3 cut(s)	465, 481, 1176
XapI	RAATTY	1 cut(s)	868
XmaJI	CCTAGG	1 cut(s)	673
XmiI	GTMKAC	1 cut(s)	1127
XmnI	GAANNNNTTC	2 cut(s)	419, 527
XspI	CTAG	2 cut(s)	674, 737

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.