Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0002797

Physical Location & Seq

Genomic Coordinates Forward (+)

34191028 .. 34195362

Gene Structure 4335 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG166400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGCTTACCCTGAATCTCAACACTCCTTCCATCACTGTCACTTTCTCCAAATCCACCCATCACTACCCCATCAATGCCTCCCCCTCTTCTCTCCCCAACACAAGATTCCCCACCTCATCTGCTCTCCTCCACACACCCACCAAACCTTTCACCAGAATCCATGCCCACCCATTTGGATTCTCTTCAAAACCCACTTCCCAGATCCATGGTTTGAACCCAAAGTTCCCATCTTTGTTCTCCTCCAGACCCAGATCCCAAACCCCAAAAGCTTCTTCTGCTTCAGAAGCCAACCCCAATGGAGATATTGAACCCACAGTTCCAAAGCCTAAAGTCACAACCGCCCAGCTTTCCTTGATCTTTGGGCTCTGGTACTTCCAGAACATTGTCTTCAATATCTACAACAAGAAGGCACTGAATGTTTTCCCATTCCCATGGCTTCTGGCTTCGTTTCAGCTCTTTGCCGGGTCCGTCTGGATGTTGATCCTCTGGTCTCTGAAGCTCCAGCCATGCCCGAAAATCTCGAAACCGTTCATTGTTGCTCTCCTTGGCCCTGCATTGTTCCACACCATAGGCCACATCTCGGCCTGCGTCTCATTCTCTAAGGTCGCTGTGTCCTTCACCCATGTCATCAAGTCTGCGGAGCCTGTATTTTCGGTGGTGTTTTCGTCGTTCCTAGGGGAGACTTACCCCATACAGGTCTGGCTTTCGATTCTTCCTATTGTTATGGGTTGTTCTCTAGCTGCTGTTACTGAGGGTTTCTCTGAAGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006820 GO:0008028 GO:0008150 GO:0008509 GO:0008514 GO:0008643 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0015075 GO:0015120 GO:0015144 GO:0015318 GO:0015605 GO:0015711 GO:0015713 GO:0015717 GO:0015718 GO:0015748 GO:0015849 GO:0022857 GO:0031967 GO:0031975 GO:0034219 GO:0034220 GO:0035436 GO:0042873 GO:0042879 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071917 GO:0098656 GO:1901264 GO:1901505 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

256

Amino Acids

28.09

Weight (kDa)

9.75

Isoelectric Point (pI)

49.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPT	PF03151	115 - 251	8.7e-53	Triose-phosphate Transporter family
EamA	PF00892	132 - 247	7.5e-06	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002797)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17630
fragaria_vesca	FvH4_7g07680
malus_domestica	MD02G1233400.v1.1 MD04G1135700.v1.1 MD04G1135800.v1.1 MD07G1080200.v1.1
prunus_persica	Prupe.2G104200_v2.0.a1
pyrus_communis	pycom02g20160 pycom07g06380 pycom12g15330
rosa_chinensis	RchiOBHm_Chr1g0342641 RchiOBHm_Chr2g0089941 RchiOBHm_Chr2g0137951 RchiOBHm_Chr5g0045131 RchiOBHm_Chr5g0045141
rosa_laevigata	RLG00000009883 RLG00000029167 RLG00000029185
rosa_multiflora	Rmu_sc0000539.1_g000061 Rmu_sc0005365.1_g000006 Rmu_sc0007318.1_g000001 Rmu_ssc0000177.1_g000005
rosa_roxburghii	Rroxscaffold_4G00313140 Rroxscaffold_6G00402970
rosa_rugosa	Rorug01G0146900.1 Rorug04G0068400 Rorug04G0068500 Rorug04G0068600 Rorug07G0164400 Rorug07G0164400
rosa_samantha	Rh1AG165200 Rh1AG191600 Rh1BG131300 Rh1CG153800 Rh1DG166400 Rh2BG401800 Rh5BG310600 Rh5DG321000
rosa_wichuraiana	Rw1G013710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	339, 638
AclWI	GGATC	3 cut(s)	196, 246, 475
AcuI	CTGAAG	2 cut(s)	264, 515
AfaI	GTAC	1 cut(s)	371
AfiI	CCNNNNNNNGG	2 cut(s)	580, 694
AgsI	TTSAA	4 cut(s)	186, 214, 308, 391
AjuI	GAANNNNNNNTTGG	4 cut(s)	89, 121, 256, 288
AluBI	AGCT	5 cut(s)	269, 346, 454, 499, 740
AluI	AGCT	5 cut(s)	269, 346, 454, 499, 740
Alw26I	GTCTC	3 cut(s)	495, 595, 674
AlwI	GGATC	3 cut(s)	196, 246, 475
AoxI	GGCC	3 cut(s)	547, 571, 582
ApeKI	GCWGC	1 cut(s)	740
Asp700I	GAANNNNTTC	2 cut(s)	419, 527
AspA2I	CCTAGG	1 cut(s)	673
AspS9I	GGNCC	2 cut(s)	465, 548
AsuC2I	CCSGG	1 cut(s)	463
AsuHPI	GGTGA	2 cut(s)	142, 610
AvaII	GGWCC	1 cut(s)	465
AvrII	CCTAGG	1 cut(s)	673
BanII	GRGCYC	1 cut(s)	366
BbsI	GAAGAC	1 cut(s)	379
BbvI	GCAGC	1 cut(s)	727
BccI	CCATC	4 cut(s)	38, 66, 77, 235
BcnI	CCSGG	1 cut(s)	463
BcoDI	GTCTC	3 cut(s)	495, 595, 674
BfaI	CTAG	3 cut(s)	674, 737, 769
BisI	GCNGC	1 cut(s)	741
BlnI	CCTAGG	1 cut(s)	673
BlsI	GCNGC	1 cut(s)	742
Bme1390I	CCNGG	1 cut(s)	463
Bme18I	GGWCC	1 cut(s)	465
BmgT120I	GGNCC	2 cut(s)	465, 548
BmiI	GGNNCC	2 cut(s)	466, 642
BmrFI	CCNGG	1 cut(s)	463
BpiI	GAAGAC	1 cut(s)	379
BplI	GAGNNNNNCTC	1 cut(s)	743
BpmI	CTGGAG	2 cut(s)	226, 485
BpuMI	CCSGG	1 cut(s)	463
BsaBI	GATNNNNATC	1 cut(s)	479
BsaI	GGTCTC	1 cut(s)	495
BsaJI	CCNNGG	4 cut(s)	205, 431, 544, 673
Bsc4I	CCNNNNNNNGG	2 cut(s)	580, 694
Bse8I	GATNNNNATC	1 cut(s)	479
BseDI	CCNNGG	4 cut(s)	205, 431, 544, 673
BseGI	GGATG	1 cut(s)	480
BseJI	GATNNNNATC	1 cut(s)	479
BseLI	CCNNNNNNNGG	2 cut(s)	580, 694
BseMII	CTCAG	1 cut(s)	741
BseRI	GAGGAG	2 cut(s)	116, 229
BseXI	GCAGC	1 cut(s)	727
BseYI	CCCAGC	1 cut(s)	342
BshFI	GGCC	3 cut(s)	549, 573, 584
BsiSI	CCGG	1 cut(s)	462
BslI	CCNNNNNNNGG	2 cut(s)	580, 694
BsmAI	GTCTC	3 cut(s)	495, 595, 674
BsmBI	CGTCTC	1 cut(s)	595
BsnI	GGCC	3 cut(s)	549, 573, 584
Bso31I	GGTCTC	1 cut(s)	495
Bsp1286I	GDGCHC	1 cut(s)	366
Bsp143I	GATC	4 cut(s)	201, 251, 354, 480
Bsp19I	CCATGG	2 cut(s)	205, 431
BspACI	CCGC	2 cut(s)	339, 638
BspANI	GGCC	3 cut(s)	549, 573, 584
BspCNI	CTCAG	1 cut(s)	742
BspLI	GGNNCC	2 cut(s)	466, 642
BspPI	GGATC	3 cut(s)	196, 246, 475
BspTNI	GGTCTC	1 cut(s)	495
BssECI	CCNNGG	4 cut(s)	205, 431, 544, 673
BssMI	GATC	4 cut(s)	201, 251, 354, 480
BssT1I	CCWWGG	4 cut(s)	205, 431, 544, 673
Bst4CI	ACNGT	3 cut(s)	37, 316, 528
Bst6I	CTCTTC	2 cut(s)	91, 187
BstC8I	GCNNGC	1 cut(s)	586
BstDEI	CTNAG	2 cut(s)	600, 750
BstDSI	CCRYGG	2 cut(s)	205, 431
BstF5I	GGATG	1 cut(s)	480
BstKTI	GATC	4 cut(s)	204, 254, 357, 483
BstMAI	GTCTC	3 cut(s)	495, 595, 674
BstMBI	GATC	4 cut(s)	201, 251, 354, 480
BstMWI	GCNNNNNNNGC	2 cut(s)	275, 284
BstSCI	CCNGG	1 cut(s)	461
BstV1I	GCAGC	1 cut(s)	727
BstV2I	GAAGAC	1 cut(s)	379
BstX2I	RGATCY	2 cut(s)	201, 251
BstXI	CCANNNNNNTGG	3 cut(s)	173, 206, 432
BstYI	RGATCY	2 cut(s)	201, 251
BsuRI	GGCC	3 cut(s)	549, 573, 584
BtgI	CCRYGG	2 cut(s)	205, 431
BtsCI	GGATG	1 cut(s)	480
BtsIMutI	CAGTG	2 cut(s)	33, 410
Cac8I	GCNNGC	1 cut(s)	586
Cfr13I	GGNCC	2 cut(s)	465, 548
CseI	GACGC	1 cut(s)	577
Csp6I	GTAC	1 cut(s)	370
CviAII	CATG	5 cut(s)	161, 206, 432, 507, 623
CviQI	GTAC	1 cut(s)	370
DdeI	CTNAG	2 cut(s)	600, 750
DpnI	GATC	4 cut(s)	203, 253, 356, 482
DpnII	GATC	4 cut(s)	201, 251, 354, 480
Eam1104I	CTCTTC	2 cut(s)	91, 187
EarI	CTCTTC	2 cut(s)	91, 187
Eco130I	CCWWGG	4 cut(s)	205, 431, 544, 673
Eco24I	GRGCYC	1 cut(s)	366
Eco31I	GGTCTC	1 cut(s)	495
Eco47I	GGWCC	1 cut(s)	465
Eco57I	CTGAAG	2 cut(s)	264, 515
EcoT14I	CCWWGG	4 cut(s)	205, 431, 544, 673
EcoT38I	GRGCYC	1 cut(s)	366
ErhI	CCWWGG	4 cut(s)	205, 431, 544, 673
Esp3I	CGTCTC	1 cut(s)	595
FaeI	CATG	5 cut(s)	164, 209, 435, 510, 626
FaiI	YATR	8 cut(s)	162, 207, 433, 508, 569, 624, 692, 725
FatI	CATG	5 cut(s)	160, 205, 431, 506, 622
Fnu4HI	GCNGC	1 cut(s)	741
FokI	GGATG	1 cut(s)	487
FriOI	GRGCYC	1 cut(s)	366
Fsp4HI	GCNGC	1 cut(s)	741
FspBI	CTAG	3 cut(s)	674, 737, 769
GluI	GCNGC	1 cut(s)	741
GsaI	CCCAGC	1 cut(s)	346
GsuI	CTGGAG	2 cut(s)	226, 485
HaeIII	GGCC	3 cut(s)	549, 573, 584
HapII	CCGG	1 cut(s)	462
HgaI	GACGC	1 cut(s)	577
Hin1II	CATG	5 cut(s)	164, 209, 435, 510, 626
HindIII	AAGCTT	1 cut(s)	267
HinfI	GANTC	5 cut(s)	13, 105, 156, 177, 709
HpaII	CCGG	1 cut(s)	462
HphI	GGTGA	2 cut(s)	142, 610
Hpy188I	TCNGA	3 cut(s)	283, 495, 763
Hpy188III	TCNNGA	4 cut(s)	243, 376, 472, 520
Hpy99I	CGWCG	1 cut(s)	670
HpyAV	CCTTC	3 cut(s)	36, 400, 625
HpyCH4III	ACNGT	3 cut(s)	37, 316, 528
HpyCH4V	TGCA	1 cut(s)	554
HpyF10VI	GCNNNNNNNGC	2 cut(s)	275, 284
HpyF3I	CTNAG	2 cut(s)	600, 750
Hsp92II	CATG	5 cut(s)	164, 209, 435, 510, 626
Kzo9I	GATC	4 cut(s)	201, 251, 354, 480
LmnI	GCTCC	2 cut(s)	504, 640
Lsp1109I	GCAGC	1 cut(s)	727
MaeI	CTAG	3 cut(s)	674, 737, 769
MaeIII	GTNAC	3 cut(s)	37, 331, 745
MalI	GATC	4 cut(s)	203, 253, 356, 482
MboI	GATC	4 cut(s)	201, 251, 354, 480
MboII	GAAGA	5 cut(s)	78, 174, 264, 379, 704
MflI	RGATCY	2 cut(s)	201, 251
MhlI	GDGCHC	1 cut(s)	366
MnlI	CCTC	7 cut(s)	88, 94, 124, 137, 250, 494, 745
MroXI	GAANNNNTTC	2 cut(s)	419, 527
MslI	CAYNNNNRTG	1 cut(s)	430
MspI	CCGG	1 cut(s)	462
MspR9I	CCNGG	1 cut(s)	463
MwoI	GCNNNNNNNGC	2 cut(s)	275, 284
NciI	CCSGG	1 cut(s)	463
NcoI	CCATGG	2 cut(s)	205, 431
NdeII	GATC	4 cut(s)	201, 251, 354, 480
NlaIII	CATG	5 cut(s)	164, 209, 435, 510, 626
NlaIV	GGNNCC	2 cut(s)	466, 642
NmeAIII	GCCGAG	1 cut(s)	560
NmuCI	GTSAC	2 cut(s)	37, 331
PdmI	GAANNNNTTC	2 cut(s)	419, 527
PfeI	GAWTC	5 cut(s)	13, 105, 156, 177, 709
PkrI	GCNGC	1 cut(s)	742
PspFI	CCCAGC	1 cut(s)	342
PspN4I	GGNNCC	2 cut(s)	466, 642
PspPI	GGNCC	2 cut(s)	465, 548
PsuI	RGATCY	2 cut(s)	201, 251
RsaI	GTAC	1 cut(s)	371
RsaNI	GTAC	1 cut(s)	370
RseI	CAYNNNNRTG	1 cut(s)	430
SatI	GCNGC	1 cut(s)	741
Sau3AI	GATC	4 cut(s)	201, 251, 354, 480
Sau96I	GGNCC	2 cut(s)	465, 548
ScrFI	CCNGG	1 cut(s)	463
SduI	GDGCHC	1 cut(s)	366
SetI	ASST	9 cut(s)	116, 148, 271, 348, 456, 501, 606, 699, 742
SinI	GGWCC	1 cut(s)	465
SmiMI	CAYNNNNRTG	1 cut(s)	430
SsiI	CCGC	2 cut(s)	339, 638
SspMI	CTAG	3 cut(s)	674, 737, 769
StyD4I	CCNGG	1 cut(s)	461
StyI	CCWWGG	4 cut(s)	205, 431, 544, 673
TaaI	ACNGT	3 cut(s)	37, 316, 528
TaqI	TCGA	2 cut(s)	521, 707
TfiI	GAWTC	5 cut(s)	13, 105, 156, 177, 709
TscAI	CASTG	2 cut(s)	40, 417
TseFI	GTSAC	2 cut(s)	37, 331
TseI	GCWGC	1 cut(s)	740
Tsp45I	GTSAC	2 cut(s)	37, 331
TspDTI	ATGAA	1 cut(s)	520
TspGWI	ACGGA	1 cut(s)	457
TspRI	CASTG	2 cut(s)	40, 417
VpaK11BI	GGWCC	1 cut(s)	465
XmaJI	CCTAGG	1 cut(s)	673
XmnI	GAANNNNTTC	2 cut(s)	419, 527
XspI	CTAG	3 cut(s)	674, 737, 769

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.