Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000539.1

Orthogroup ID

OG0002797

Physical Location & Seq

Genomic Coordinates Forward (+)

285974 .. 286756

Gene Structure 783 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000539.1_g000061.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

atgttgatcctctggtctctgaagctccagccatgcccgaaaatctcgaaaccgttcattgttgctctccttggccctgctttgttccacaccataggccacatctcggcctgcgtctcattctctaaggtggctgtgtccttcacccatgtcatcaagtctgcggagcctgtcttttcggtggtgttttcgtcgttcctaggggagacttaccctatacaggtctggctttcgattcttcctattgttatgggttgttctctagctgctgttactgaggtgacattcaatttgcaaggcctgtggggggctttaattagcaatgtggggtttgtgttgaggaatatttattcgaaacggagcttacagagctttaaagaagtggatgggttgaatttgtatggttgcatcagtataatttctctgttttatttgtttcctgtggcggttttgtttgaagggtcgcaatgggttcaagggtatcatagagctatagcatctgtgggggaaccatctacattttacttttgggtgttgttgtccggagtgttttaccatctgtataaccagtcgagttatcaggctcttgatgagattagccctctgacattctcagttggaaacacaatgaagagggtggtggtgattgtgtctactgtgttggtgttcagaaatccagttagacctcttaatgcacttgggtccgctgtggcgatatttgggacattcttgtattctcaggcaacagctaagaagaaaaaggaagctgaaaagaagaattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006820 GO:0008028 GO:0008150 GO:0008509 GO:0008514 GO:0008643 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0015075 GO:0015120 GO:0015144 GO:0015318 GO:0015605 GO:0015711 GO:0015713 GO:0015717 GO:0015718 GO:0015748 GO:0015849 GO:0022857 GO:0031967 GO:0031975 GO:0034219 GO:0034220 GO:0035436 GO:0042873 GO:0042879 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071917 GO:0098656 GO:1901264 GO:1901505 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

260

Amino Acids

28.72

Weight (kDa)

9.43

Isoelectric Point (pI)

43.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002797)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17630
fragaria_vesca	FvH4_7g07680
malus_domestica	MD02G1233400.v1.1 MD04G1135700.v1.1 MD04G1135800.v1.1 MD07G1080200.v1.1
prunus_persica	Prupe.2G104200_v2.0.a1
pyrus_communis	pycom02g20160 pycom07g06380 pycom12g15330
rosa_chinensis	RchiOBHm_Chr1g0342641 RchiOBHm_Chr2g0089941 RchiOBHm_Chr2g0137951 RchiOBHm_Chr5g0045131 RchiOBHm_Chr5g0045141
rosa_laevigata	RLG00000009883 RLG00000029167 RLG00000029185
rosa_multiflora	Rmu_sc0000539.1_g000061 Rmu_sc0005365.1_g000006 Rmu_sc0007318.1_g000001 Rmu_ssc0000177.1_g000005
rosa_roxburghii	Rroxscaffold_4G00313140 Rroxscaffold_6G00402970
rosa_rugosa	Rorug01G0146900.1 Rorug04G0068400 Rorug04G0068500 Rorug04G0068600 Rorug07G0164400 Rorug07G0164400
rosa_samantha	Rh1AG165200 Rh1AG191600 Rh1BG131300 Rh1CG153800 Rh1DG166400 Rh2BG401800 Rh5BG310600 Rh5DG321000
rosa_wichuraiana	Rw1G013710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	653
AccIII	TCCGGA	1 cut(s)	542
AciI	CCGC	3 cut(s)	164, 446, 705
AcsI	RAATTY	1 cut(s)	394
AcuI	CTGAAG	1 cut(s)	41
AfiI	CCNNNNNNNGG	3 cut(s)	106, 220, 307
AgsI	TTSAA	4 cut(s)	289, 394, 458, 476
AluBI	AGCT	7 cut(s)	25, 266, 363, 372, 491, 749, 767
AluI	AGCT	7 cut(s)	25, 266, 363, 372, 491, 749, 767
Alw26I	GTCTC	3 cut(s)	21, 121, 200
Aor13HI	TCCGGA	1 cut(s)	542
AoxI	GGCC	4 cut(s)	73, 97, 108, 298
ApeKI	GCWGC	1 cut(s)	266
ApoI	RAATTY	1 cut(s)	394
ArsI	GACNNNNNNTTYG	2 cut(s)	274, 306
Asp700I	GAANNNNTTC	1 cut(s)	53
AspA2I	CCTAGG	1 cut(s)	199
AspS9I	GGNCC	2 cut(s)	74, 702
AsuHPI	GGTGA	3 cut(s)	136, 292, 655
AsuII	TTCGAA	1 cut(s)	353
AvaII	GGWCC	1 cut(s)	702
AvrII	CCTAGG	1 cut(s)	199
BbvI	GCAGC	1 cut(s)	253
BccI	CCATC	3 cut(s)	380, 520, 564
BcoDI	GTCTC	3 cut(s)	21, 121, 200
BfaI	CTAG	2 cut(s)	200, 263
BfmI	CTRYAG	1 cut(s)	492
BisI	GCNGC	1 cut(s)	267
BlnI	CCTAGG	1 cut(s)	199
BlsI	GCNGC	1 cut(s)	268
Bme18I	GGWCC	1 cut(s)	702
BmgT120I	GGNCC	2 cut(s)	74, 702
BmiI	GGNNCC	3 cut(s)	168, 510, 703
BmsI	GCATC	2 cut(s)	417, 506
BpmI	CTGGAG	1 cut(s)	11
Bpu14I	TTCGAA	1 cut(s)	353
BsaI	GGTCTC	1 cut(s)	21
BsaJI	CCNNGG	2 cut(s)	70, 199
BsaWI	WCCGGW	1 cut(s)	542
Bsc4I	CCNNNNNNNGG	3 cut(s)	106, 220, 307
Bse1I	ACTGG	2 cut(s)	568, 677
Bse3DI	GCAATG	2 cut(s)	328, 473
BseAI	TCCGGA	1 cut(s)	542
BseDI	CCNNGG	2 cut(s)	70, 199
BseGI	GGATG	1 cut(s)	391
BseLI	CCNNNNNNNGG	3 cut(s)	106, 220, 307
BseMI	GCAATG	2 cut(s)	328, 473
BseMII	CTCAG	3 cut(s)	267, 627, 752
BseNI	ACTGG	2 cut(s)	568, 677
BseXI	GCAGC	1 cut(s)	253
BshFI	GGCC	4 cut(s)	75, 99, 110, 300
BsiSI	CCGG	1 cut(s)	543
BslFI	GGGAC	1 cut(s)	736
BslI	CCNNNNNNNGG	3 cut(s)	106, 220, 307
BsmAI	GTCTC	3 cut(s)	21, 121, 200
BsmBI	CGTCTC	1 cut(s)	121
BsmFI	GGGAC	1 cut(s)	736
BsnI	GGCC	4 cut(s)	75, 99, 110, 300
Bso31I	GGTCTC	1 cut(s)	21
Bsp119I	TTCGAA	1 cut(s)	353
Bsp13I	TCCGGA	1 cut(s)	542
Bsp143I	GATC	1 cut(s)	6
BspACI	CCGC	3 cut(s)	164, 446, 705
BspANI	GGCC	4 cut(s)	75, 99, 110, 300
BspCNI	CTCAG	3 cut(s)	268, 626, 751
BspEI	TCCGGA	1 cut(s)	542
BspLI	GGNNCC	3 cut(s)	168, 510, 703
BspT104I	TTCGAA	1 cut(s)	353
BspTNI	GGTCTC	1 cut(s)	21
BsrDI	GCAATG	2 cut(s)	328, 473
BsrI	ACTGG	2 cut(s)	568, 677
BssECI	CCNNGG	2 cut(s)	70, 199
BssMI	GATC	1 cut(s)	6
BssT1I	CCWWGG	2 cut(s)	70, 199
Bst4CI	ACNGT	2 cut(s)	54, 658
Bst6I	CTCTTC	1 cut(s)	626
BstBI	TTCGAA	1 cut(s)	353
BstC8I	GCNNGC	1 cut(s)	112
BstDEI	CTNAG	5 cut(s)	126, 276, 613, 738, 750
BstF5I	GGATG	1 cut(s)	391
BstKTI	GATC	1 cut(s)	9
BstMAI	GTCTC	3 cut(s)	21, 121, 200
BstMBI	GATC	1 cut(s)	6
BstMWI	GCNNNNNNNGC	1 cut(s)	369
BstSFI	CTRYAG	1 cut(s)	492
BstV1I	GCAGC	1 cut(s)	253
BsuRI	GGCC	4 cut(s)	75, 99, 110, 300
BtsCI	GGATG	1 cut(s)	391
Cac8I	GCNNGC	1 cut(s)	112
Cfr13I	GGNCC	2 cut(s)	74, 702
CseI	GACGC	1 cut(s)	103
CspCI	CAANNNNNGTGG	2 cut(s)	284, 319
CviAII	CATG	2 cut(s)	33, 149
DdeI	CTNAG	5 cut(s)	126, 276, 613, 738, 750
DpnI	GATC	1 cut(s)	8
DpnII	GATC	1 cut(s)	6
DraI	TTTAAA	1 cut(s)	376
Eam1104I	CTCTTC	1 cut(s)	626
EarI	CTCTTC	1 cut(s)	626
Eco130I	CCWWGG	2 cut(s)	70, 199
Eco147I	AGGCCT	1 cut(s)	300
Eco31I	GGTCTC	1 cut(s)	21
Eco47I	GGWCC	1 cut(s)	702
Eco57I	CTGAAG	1 cut(s)	41
EcoT14I	CCWWGG	2 cut(s)	70, 199
ErhI	CCWWGG	2 cut(s)	70, 199
Esp3I	CGTCTC	1 cut(s)	121
FaeI	CATG	2 cut(s)	36, 152
FaqI	GGGAC	1 cut(s)	736
FatI	CATG	2 cut(s)	32, 148
FblI	GTMKAC	1 cut(s)	653
Fnu4HI	GCNGC	1 cut(s)	267
FokI	GGATG	1 cut(s)	398
Fsp4HI	GCNGC	1 cut(s)	267
FspBI	CTAG	2 cut(s)	200, 263
GluI	GCNGC	1 cut(s)	267
GsuI	CTGGAG	1 cut(s)	11
HaeIII	GGCC	4 cut(s)	75, 99, 110, 300
HapII	CCGG	1 cut(s)	543
HgaI	GACGC	1 cut(s)	103
Hin1II	CATG	2 cut(s)	36, 152
HinfI	GANTC	1 cut(s)	235
HpaII	CCGG	1 cut(s)	543
HphI	GGTGA	3 cut(s)	136, 292, 655
Hpy166II	GTNNAC	1 cut(s)	654
Hpy188I	TCNGA	3 cut(s)	21, 606, 671
Hpy188III	TCNNGA	3 cut(s)	46, 543, 587
Hpy8I	GTNNAC	1 cut(s)	654
Hpy99I	CGWCG	1 cut(s)	196
HpyAV	CCTTC	2 cut(s)	151, 452
HpyCH4III	ACNGT	2 cut(s)	54, 658
HpyCH4V	TGCA	3 cut(s)	295, 408, 695
HpyF10VI	GCNNNNNNNGC	1 cut(s)	369
HpyF3I	CTNAG	5 cut(s)	126, 276, 613, 738, 750
Hsp92II	CATG	2 cut(s)	36, 152
Kpn2I	TCCGGA	1 cut(s)	542
Kzo9I	GATC	1 cut(s)	6
LmnI	GCTCC	3 cut(s)	30, 166, 360
Lsp1109I	GCAGC	1 cut(s)	253
LweI	GCATC	2 cut(s)	417, 506
MaeI	CTAG	2 cut(s)	200, 263
MaeIII	GTNAC	2 cut(s)	271, 280
MalI	GATC	1 cut(s)	8
MboI	GATC	1 cut(s)	6
MboII	GAAGA	3 cut(s)	230, 643, 766
MluCI	AATT	5 cut(s)	289, 315, 394, 417, 778
MmeI	TCCRAC	1 cut(s)	598
MnlI	CCTC	6 cut(s)	20, 271, 333, 612, 627, 696
MroI	TCCGGA	1 cut(s)	542
MroXI	GAANNNNTTC	1 cut(s)	53
MseI	TTAA	3 cut(s)	314, 375, 690
MspA1I	CMGCKG	1 cut(s)	707
MspI	CCGG	1 cut(s)	543
MwoI	GCNNNNNNNGC	1 cut(s)	369
NdeII	GATC	1 cut(s)	6
NlaIII	CATG	2 cut(s)	36, 152
NlaIV	GGNNCC	3 cut(s)	168, 510, 703
NmeAIII	GCCGAG	1 cut(s)	86
NmuCI	GTSAC	1 cut(s)	280
NspV	TTCGAA	1 cut(s)	353
PceI	AGGCCT	1 cut(s)	300
PdmI	GAANNNNTTC	1 cut(s)	53
PfeI	GAWTC	1 cut(s)	235
PkrI	GCNGC	1 cut(s)	268
PspN4I	GGNNCC	3 cut(s)	168, 510, 703
PspPI	GGNCC	2 cut(s)	74, 702
SaqAI	TTAA	3 cut(s)	314, 375, 690
SatI	GCNGC	1 cut(s)	267
Sau3AI	GATC	1 cut(s)	6
Sau96I	GGNCC	2 cut(s)	74, 702
SfaNI	GCATC	2 cut(s)	417, 506
SfcI	CTRYAG	1 cut(s)	492
SfuI	TTCGAA	1 cut(s)	353
SinI	GGWCC	1 cut(s)	702
Sse9I	AATT	5 cut(s)	289, 315, 394, 417, 778
SseBI	AGGCCT	1 cut(s)	300
SsiI	CCGC	3 cut(s)	164, 446, 705
SspI	AATATT	1 cut(s)	346
SspMI	CTAG	2 cut(s)	200, 263
StuI	AGGCCT	1 cut(s)	300
StyI	CCWWGG	2 cut(s)	70, 199
TaaI	ACNGT	2 cut(s)	54, 658
TaqI	TCGA	4 cut(s)	47, 233, 353, 572
TasI	AATT	5 cut(s)	289, 315, 394, 417, 778
TfiI	GAWTC	1 cut(s)	235
Tru1I	TTAA	3 cut(s)	314, 375, 690
Tru9I	TTAA	3 cut(s)	314, 375, 690
TseFI	GTSAC	1 cut(s)	280
TseI	GCWGC	1 cut(s)	266
Tsp45I	GTSAC	1 cut(s)	280
TspDTI	ATGAA	2 cut(s)	46, 644
TspGWI	ACGGA	1 cut(s)	373
VpaK11BI	GGWCC	1 cut(s)	702
XapI	RAATTY	1 cut(s)	394
XmaJI	CCTAGG	1 cut(s)	199
XmiI	GTMKAC	1 cut(s)	653
XmnI	GAANNNNTTC	1 cut(s)	53
XspI	CTAG	2 cut(s)	200, 263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.