Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0002797

Physical Location & Seq

Genomic Coordinates Forward (+)

5649134 .. 5650219

Gene Structure 1086 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g06380.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGTGCCAGATTCGAGATTTGAGCTCAAAGATCAGCCATTTGAGCAAAACCTGTGGATTCCCATCTGGGTTTGGAACGAAACCCAAATCCCAAATCCCCAAAGCTGCTTCTGAATCTAATCCAGGAGGAGAAACGGAAGCCACAGTCTCAAAGCCCAAGGTCACCACCGTCCAGCTCGCGCTTATTTTTGGGCTCTGGTACTTCCAAAACATTGTCTTCAACATCTACAACAAGAAGGTACTGAATGTCTTTCCATTTCCATGGCTTCTCGCATCTTTTCAGCTCTTTGCTGGGTCTGTTTGGATGTTCATTCTCTGGTCTTTGAAGCTCCAACCCCGCCCGAAAATTTCAAAACCTTTCATCGTTGCACTCCTTGGACCTGCATTGTTCCACACTATAGGTCACATTTCAGCATGTGTCTCGTTCTCTAAGGTGGCTGTTTCTTTCACCCATGTAATCAAATCCTCGGAGCCTGTTTTCTCAGTAGTGTTTTCGTCGTTCCTAGGAGATTCGTACCCGTTACAGGTCTGGCTCTCAATTCTCCCTATTGTAATGGGTTGTGCTCTAGCTGCTATCACTGAGGTGTCATTCAATGTGCAAGGCCTTTGGGGTGCTTTGATTAGCAATGTCGGGTTTGTGTTGAGGAACATTTACTCGAAACGTAGTTTACAGAACTTCAAGGAAGTAGATGGGTTGAATTTGTACGGTTGGATCAGTATAATTTCGTTCTTCTATCTGTTTCCCGCCGCTATTTTCGTTGAAGGGTCTCAATGGGTTCAAGGATATCACAAAGCTCTTGCAGCTGTGGGAAAACCATCCACATTGTACATATGGGTGTTGTTATCCGGAGTGTTTTACCATCTCTATAACCAATCGTCGTATCAAGCACTTGACGAAATTAGTCCCTTGACCTTTTCAGTTGGGAACACAATGAAGAGGGTGGTGGTAATCGTATCGACTGTGTTAGTGTTCAGAAATCCAGTCAGACCTCTTAATGCACTTGGCTCCGCCGTTGCAATATTTGGGACTTTCTTGTATTCGCAGGCAACAGCTAAAAAGAAAAAGGGAGGTGAAAAGAAGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006820 GO:0008028 GO:0008150 GO:0008509 GO:0008514 GO:0008643 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0015075 GO:0015120 GO:0015144 GO:0015318 GO:0015605 GO:0015711 GO:0015713 GO:0015717 GO:0015718 GO:0015748 GO:0015849 GO:0022857 GO:0031967 GO:0031975 GO:0034219 GO:0034220 GO:0035436 GO:0042873 GO:0042879 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071917 GO:0098656 GO:1901264 GO:1901505 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

362

Amino Acids

39.85

Weight (kDa)

9.76

Isoelectric Point (pI)

41.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPT	PF03151	58 - 347	4.3e-115	Triose-phosphate Transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002797)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17630
fragaria_vesca	FvH4_7g07680
malus_domestica	MD02G1233400.v1.1 MD04G1135700.v1.1 MD04G1135800.v1.1 MD07G1080200.v1.1
prunus_persica	Prupe.2G104200_v2.0.a1
pyrus_communis	pycom02g20160 pycom07g06380 pycom12g15330
rosa_chinensis	RchiOBHm_Chr1g0342641 RchiOBHm_Chr2g0089941 RchiOBHm_Chr2g0137951 RchiOBHm_Chr5g0045131 RchiOBHm_Chr5g0045141
rosa_laevigata	RLG00000009883 RLG00000029167 RLG00000029185
rosa_multiflora	Rmu_sc0000539.1_g000061 Rmu_sc0005365.1_g000006 Rmu_sc0007318.1_g000001 Rmu_ssc0000177.1_g000005
rosa_roxburghii	Rroxscaffold_4G00313140 Rroxscaffold_6G00402970
rosa_rugosa	Rorug01G0146900.1 Rorug04G0068400 Rorug04G0068500 Rorug04G0068600 Rorug07G0164400 Rorug07G0164400
rosa_samantha	Rh1AG165200 Rh1AG191600 Rh1BG131300 Rh1CG153800 Rh1DG166400 Rh2BG401800 Rh5BG310600 Rh5DG321000
rosa_wichuraiana	Rw1G013710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	388
AccII	CGCG	1 cut(s)	179
AccIII	TCCGGA	1 cut(s)	845
AciI	CCGC	4 cut(s)	337, 744, 747, 1008
AclWI	GGATC	1 cut(s)	719
AcsI	RAATTY	2 cut(s)	345, 697
AfaI	GTAC	5 cut(s)	200, 240, 515, 704, 827
AfiI	CCNNNNNNNGG	1 cut(s)	523
AgsI	TTSAA	8 cut(s)	220, 325, 351, 592, 679, 697, 761, 779
AjnI	CCWGG	1 cut(s)	121
AleI	CACNNNNGTG	1 cut(s)	581
AluBI	AGCT	9 cut(s)	24, 104, 175, 283, 328, 569, 794, 803, 1052
AluI	AGCT	9 cut(s)	24, 104, 175, 283, 328, 569, 794, 803, 1052
Alw21I	GWGCWC	2 cut(s)	26, 565
Alw26I	GTCTC	3 cut(s)	151, 424, 771
AlwI	GGATC	1 cut(s)	719
Aor13HI	TCCGGA	1 cut(s)	845
AoxI	GGCC	1 cut(s)	601
ApeKI	GCWGC	3 cut(s)	104, 569, 800
ApoI	RAATTY	2 cut(s)	345, 697
AspA2I	CCTAGG	1 cut(s)	502
AspLEI	GCGC	1 cut(s)	181
AspS9I	GGNCC	1 cut(s)	377
AsuHPI	GGTGA	3 cut(s)	154, 439, 1082
AvaII	GGWCC	1 cut(s)	377
AvrII	CCTAGG	1 cut(s)	502
BanII	GRGCYC	2 cut(s)	26, 195
BbsI	GAAGAC	1 cut(s)	208
Bbv12I	GWGCWC	2 cut(s)	26, 565
BbvI	GCAGC	3 cut(s)	91, 556, 812
BccI	CCATC	4 cut(s)	70, 683, 823, 867
BceAI	ACGGC	1 cut(s)	995
BcgI	CGANNNNNNTGC	2 cut(s)	402, 436
BciT130I	CCWGG	1 cut(s)	123
BcoDI	GTCTC	3 cut(s)	151, 424, 771
BfaI	CTAG	2 cut(s)	503, 566
BfmI	CTRYAG	1 cut(s)	396
BfuAI	ACCTGC	1 cut(s)	388
BisI	GCNGC	4 cut(s)	105, 570, 747, 801
BlnI	CCTAGG	1 cut(s)	502
BlsI	GCNGC	4 cut(s)	106, 571, 748, 802
Bme1390I	CCNGG	1 cut(s)	123
Bme18I	GGWCC	1 cut(s)	377
BmgT120I	GGNCC	1 cut(s)	377
BmiI	GGNNCC	2 cut(s)	471, 1006
BmrFI	CCNGG	1 cut(s)	123
BmsI	GCATC	1 cut(s)	281
BpiI	GAAGAC	1 cut(s)	208
BsaBI	GATNNNNATC	1 cut(s)	61
BsaI	GGTCTC	1 cut(s)	771
BsaJI	CCNNGG	5 cut(s)	156, 260, 373, 465, 502
BsaWI	WCCGGW	1 cut(s)	845
Bsc4I	CCNNNNNNNGG	1 cut(s)	523
Bse1I	ACTGG	1 cut(s)	980
Bse3DI	GCAATG	1 cut(s)	631
Bse8I	GATNNNNATC	1 cut(s)	61
BseAI	TCCGGA	1 cut(s)	845
BseBI	CCWGG	1 cut(s)	123
BseDI	CCNNGG	5 cut(s)	156, 260, 373, 465, 502
BseGI	GGATG	2 cut(s)	309, 815
BseJI	GATNNNNATC	1 cut(s)	61
BseLI	CCNNNNNNNGG	1 cut(s)	523
BseMI	GCAATG	1 cut(s)	631
BseMII	CTCAG	2 cut(s)	495, 570
BseNI	ACTGG	1 cut(s)	980
BseRI	GAGGAG	1 cut(s)	141
BseXI	GCAGC	3 cut(s)	91, 556, 812
BseYI	CCCAGC	1 cut(s)	290
Bsh1236I	CGCG	1 cut(s)	179
BshFI	GGCC	1 cut(s)	603
BsiHKAI	GWGCWC	2 cut(s)	26, 565
BsiSI	CCGG	1 cut(s)	846
BslFI	GGGAC	2 cut(s)	888, 1039
BslI	CCNNNNNNNGG	1 cut(s)	523
BsmAI	GTCTC	3 cut(s)	151, 424, 771
BsmFI	GGGAC	2 cut(s)	888, 1039
BsnI	GGCC	1 cut(s)	603
Bso31I	GGTCTC	1 cut(s)	771
Bsp1286I	GDGCHC	3 cut(s)	26, 195, 565
Bsp13I	TCCGGA	1 cut(s)	845
Bsp1407I	TGTACA	1 cut(s)	825
Bsp143I	GATC	2 cut(s)	30, 711
Bsp19I	CCATGG	1 cut(s)	260
BspACI	CCGC	4 cut(s)	337, 744, 747, 1008
BspANI	GGCC	1 cut(s)	603
BspCNI	CTCAG	2 cut(s)	494, 571
BspEI	TCCGGA	1 cut(s)	845
BspFNI	CGCG	1 cut(s)	179
BspLI	GGNNCC	2 cut(s)	471, 1006
BspMI	ACCTGC	1 cut(s)	388
BspPI	GGATC	1 cut(s)	719
BspTNI	GGTCTC	1 cut(s)	771
BsrDI	GCAATG	1 cut(s)	631
BsrGI	TGTACA	1 cut(s)	825
BsrI	ACTGG	1 cut(s)	980
BssECI	CCNNGG	5 cut(s)	156, 260, 373, 465, 502
BssMI	GATC	2 cut(s)	30, 711
BssT1I	CCWWGG	4 cut(s)	156, 260, 373, 502
Bst2UI	CCWGG	1 cut(s)	123
Bst4CI	ACNGT	4 cut(s)	145, 169, 707, 961
Bst6I	CTCTTC	1 cut(s)	929
BstAUI	TGTACA	1 cut(s)	825
BstC8I	GCNNGC	2 cut(s)	177, 1044
BstDEI	CTNAG	3 cut(s)	429, 481, 579
BstDSI	CCRYGG	1 cut(s)	260
BstEII	GGTNACC	1 cut(s)	160
BstF5I	GGATG	2 cut(s)	309, 815
BstFNI	CGCG	1 cut(s)	179
BstHHI	GCGC	1 cut(s)	181
BstKTI	GATC	2 cut(s)	33, 714
BstMAI	GTCTC	3 cut(s)	151, 424, 771
BstMBI	GATC	2 cut(s)	30, 711
BstMWI	GCNNNNNNNGC	3 cut(s)	42, 569, 800
BstNI	CCWGG	1 cut(s)	123
BstNSI	RCATGY	1 cut(s)	417
BstPI	GGTNACC	1 cut(s)	160
BstSCI	CCNGG	1 cut(s)	121
BstSFI	CTRYAG	1 cut(s)	396
BstUI	CGCG	1 cut(s)	179
BstV1I	GCAGC	3 cut(s)	91, 556, 812
BstV2I	GAAGAC	1 cut(s)	208
BstXI	CCANNNNNNTGG	1 cut(s)	261
BsuRI	GGCC	1 cut(s)	603
BtgI	CCRYGG	1 cut(s)	260
BtsCI	GGATG	2 cut(s)	309, 815
BtsIMutI	CAGTG	1 cut(s)	576
BveI	ACCTGC	1 cut(s)	388
Cac8I	GCNNGC	2 cut(s)	177, 1044
CfoI	GCGC	1 cut(s)	181
Cfr13I	GGNCC	1 cut(s)	377
Csp6I	GTAC	5 cut(s)	199, 239, 514, 703, 826
CspCI	CAANNNNNGTGG	2 cut(s)	34, 69
CviAII	CATG	3 cut(s)	261, 414, 452
CviQI	GTAC	5 cut(s)	199, 239, 514, 703, 826
DdeI	CTNAG	3 cut(s)	429, 481, 579
DpnI	GATC	2 cut(s)	32, 713
DpnII	GATC	2 cut(s)	30, 711
Eam1104I	CTCTTC	1 cut(s)	929
EarI	CTCTTC	1 cut(s)	929
EciI	GGCGGA	1 cut(s)	997
Ecl136II	GAGCTC	1 cut(s)	24
Eco130I	CCWWGG	4 cut(s)	156, 260, 373, 502
Eco147I	AGGCCT	1 cut(s)	603
Eco24I	GRGCYC	2 cut(s)	26, 195
Eco31I	GGTCTC	1 cut(s)	771
Eco32I	GATATC	1 cut(s)	785
Eco47I	GGWCC	1 cut(s)	377
Eco53kI	GAGCTC	1 cut(s)	24
Eco91I	GGTNACC	1 cut(s)	160
EcoICRI	GAGCTC	1 cut(s)	24
EcoO65I	GGTNACC	1 cut(s)	160
EcoRII	CCWGG	1 cut(s)	121
EcoRV	GATATC	1 cut(s)	785
EcoT14I	CCWWGG	4 cut(s)	156, 260, 373, 502
EcoT38I	GRGCYC	2 cut(s)	26, 195
ErhI	CCWWGG	4 cut(s)	156, 260, 373, 502
FaeI	CATG	3 cut(s)	264, 417, 455
FaiI	YATR	8 cut(s)	262, 398, 415, 453, 719, 830, 832, 867
FaqI	GGGAC	2 cut(s)	888, 1039
FatI	CATG	3 cut(s)	260, 413, 451
FauI	CCCGC	2 cut(s)	344, 751
FauNDI	CATATG	1 cut(s)	830
Fnu4HI	GCNGC	4 cut(s)	105, 570, 747, 801
FokI	GGATG	2 cut(s)	316, 802
FriOI	GRGCYC	2 cut(s)	26, 195
Fsp4HI	GCNGC	4 cut(s)	105, 570, 747, 801
FspBI	CTAG	2 cut(s)	503, 566
GlaI	GCGC	1 cut(s)	180
GluI	GCNGC	4 cut(s)	105, 570, 747, 801
GsaI	CCCAGC	1 cut(s)	294
HaeIII	GGCC	1 cut(s)	603
HapII	CCGG	1 cut(s)	846
HhaI	GCGC	1 cut(s)	181
Hin1II	CATG	3 cut(s)	264, 417, 455
Hin6I	GCGC	1 cut(s)	179
HinP1I	GCGC	1 cut(s)	179
HinfI	GANTC	4 cut(s)	10, 57, 113, 509
HpaII	CCGG	1 cut(s)	846
HphI	GGTGA	3 cut(s)	154, 439, 1082
Hpy166II	GTNNAC	1 cut(s)	668
Hpy188I	TCNGA	4 cut(s)	112, 469, 974, 986
Hpy188III	TCNNGA	2 cut(s)	14, 846
Hpy8I	GTNNAC	1 cut(s)	668
Hpy99I	CGWCG	2 cut(s)	499, 880
HpyAV	CCTTC	3 cut(s)	229, 755, 1072
HpyCH4III	ACNGT	4 cut(s)	145, 169, 707, 961
HpyCH4IV	ACGT	1 cut(s)	661
HpyCH4V	TGCA	6 cut(s)	368, 383, 598, 800, 998, 1016
HpyF10VI	GCNNNNNNNGC	3 cut(s)	42, 569, 800
HpyF3I	CTNAG	3 cut(s)	429, 481, 579
HpySE526I	ACGT	1 cut(s)	661
Hsp92II	CATG	3 cut(s)	264, 417, 455
HspAI	GCGC	1 cut(s)	179
Kpn2I	TCCGGA	1 cut(s)	845
Kzo9I	GATC	2 cut(s)	30, 711
LmnI	GCTCC	3 cut(s)	333, 469, 1010
Lsp1109I	GCAGC	3 cut(s)	91, 556, 812
LweI	GCATC	1 cut(s)	281
MaeI	CTAG	2 cut(s)	503, 566
MaeII	ACGT	1 cut(s)	661
MaeIII	GTNAC	3 cut(s)	160, 401, 519
MalI	GATC	2 cut(s)	32, 713
MboI	GATC	2 cut(s)	30, 711
MboII	GAAGA	3 cut(s)	208, 721, 946
MhlI	GDGCHC	3 cut(s)	26, 195, 565
MluCI	AATT	5 cut(s)	345, 537, 697, 720, 897
MmeI	TCCRAC	2 cut(s)	355, 689
MnlI	CCTC	7 cut(s)	119, 475, 574, 636, 930, 999, 1061
MroI	TCCGGA	1 cut(s)	845
MseI	TTAA	1 cut(s)	993
MslI	CAYNNNNRTG	3 cut(s)	259, 581, 833
MspA1I	CMGCKG	1 cut(s)	803
MspI	CCGG	1 cut(s)	846
MspR9I	CCNGG	1 cut(s)	123
MvaI	CCWGG	1 cut(s)	123
MvnI	CGCG	1 cut(s)	179
MwoI	GCNNNNNNNGC	3 cut(s)	42, 569, 800
NcoI	CCATGG	1 cut(s)	260
NdeI	CATATG	1 cut(s)	830
NdeII	GATC	2 cut(s)	30, 711
NlaIII	CATG	3 cut(s)	264, 417, 455
NlaIV	GGNNCC	2 cut(s)	471, 1006
NmuCI	GTSAC	2 cut(s)	160, 401
NspI	RCATGY	1 cut(s)	417
OliI	CACNNNNGTG	1 cut(s)	581
PceI	AGGCCT	1 cut(s)	603
PfeI	GAWTC	4 cut(s)	10, 57, 113, 509
PfoI	TCCNGGA	1 cut(s)	121
PkrI	GCNGC	4 cut(s)	106, 571, 748, 802
Psp124BI	GAGCTC	1 cut(s)	26
Psp6I	CCWGG	1 cut(s)	121
PspEI	GGTNACC	1 cut(s)	160
PspFI	CCCAGC	1 cut(s)	290
PspGI	CCWGG	1 cut(s)	121
PspN4I	GGNNCC	2 cut(s)	471, 1006
PspPI	GGNCC	1 cut(s)	377
PvuII	CAGCTG	1 cut(s)	803
RsaI	GTAC	5 cut(s)	200, 240, 515, 704, 827
RsaNI	GTAC	5 cut(s)	199, 239, 514, 703, 826
RseI	CAYNNNNRTG	3 cut(s)	259, 581, 833
SacI	GAGCTC	1 cut(s)	26
SaqAI	TTAA	1 cut(s)	993
SatI	GCNGC	4 cut(s)	105, 570, 747, 801
Sau3AI	GATC	2 cut(s)	30, 711
Sau96I	GGNCC	1 cut(s)	377
ScrFI	CCNGG	1 cut(s)	123
SduI	GDGCHC	3 cut(s)	26, 195, 565
SfaNI	GCATC	1 cut(s)	281
SfcI	CTRYAG	1 cut(s)	396
SinI	GGWCC	1 cut(s)	377
SmiMI	CAYNNNNRTG	3 cut(s)	259, 581, 833
Sse9I	AATT	5 cut(s)	345, 537, 697, 720, 897
SseBI	AGGCCT	1 cut(s)	603
SsiI	CCGC	4 cut(s)	337, 744, 747, 1008
SspI	AATATT	1 cut(s)	1020
SspMI	CTAG	2 cut(s)	503, 566
SstI	GAGCTC	1 cut(s)	26
StuI	AGGCCT	1 cut(s)	603
StyD4I	CCNGG	1 cut(s)	121
StyI	CCWWGG	4 cut(s)	156, 260, 373, 502
TaaI	ACNGT	4 cut(s)	145, 169, 707, 961
TaiI	ACGT	1 cut(s)	664
TaqI	TCGA	3 cut(s)	13, 656, 956
TasI	AATT	5 cut(s)	345, 537, 697, 720, 897
TatI	WGTACW	1 cut(s)	825
TauI	GCSGC	1 cut(s)	749
TfiI	GAWTC	4 cut(s)	10, 57, 113, 509
Tru1I	TTAA	1 cut(s)	993
Tru9I	TTAA	1 cut(s)	993
TscAI	CASTG	1 cut(s)	583
TseFI	GTSAC	2 cut(s)	160, 401
TseI	GCWGC	3 cut(s)	104, 569, 800
Tsp45I	GTSAC	2 cut(s)	160, 401
TspDTI	ATGAA	3 cut(s)	298, 349, 947
TspGWI	ACGGA	1 cut(s)	149
TspRI	CASTG	1 cut(s)	583
VpaK11BI	GGWCC	1 cut(s)	377
XapI	RAATTY	2 cut(s)	345, 697
XceI	RCATGY	1 cut(s)	417
XmaJI	CCTAGG	1 cut(s)	502
XspI	CTAG	2 cut(s)	503, 566

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.