Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002797

Physical Location & Seq

Genomic Coordinates Forward (+)

40867161 .. 40868240

Gene Structure 1080 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ32325

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGTTTTCCCATTCCCATTCCAGAACATTCCATGCCCGAAAATCTCGAACCGTTCTTGGCCCTGCTTTGTTCCACACCATAGGCCACATCTCGGCCTGCGTCTCATTCTCTAAGGTGGCTGTGTCCTTCACCCATGTCATCAAGTCTGCGGAGCCTGTCTTTTCGGTGGTGTTTTCGTCGTTCCTAGGGGAGACTTACCCTATACAGGTCTGGCTTTCGATTCTTCCTATTGTTATGGGTTGTTCTCTAGCTGCTGTTACTGAGGTGACATTCAATTTGCAAGGCCTGTGGGGGGCTTTAATTAGCAATGTGGGGTTTGTGTTGAGGAATATTTATTCGAAACAGAGCTTGCAGAGCTTTAAAGAAGTGGATGGGTTGAATTTGTATGGTTGCATCAGTATAATTTCTCTGTTTTATTTGTTTCCTGTGGCGGTTTTGGTTGAAGGGTCGCAATGGGTTCAAGGGTATCATAGAGCTATAGCATCTGTGGGGGAACCATCTACATTTTACTTTTGGGTGTTGTTGTCCGGAGTGTTTTACCATCTGTATAACCAGTCGAGTTATCAGGCTCTTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006820 GO:0008028 GO:0008150 GO:0008509 GO:0008514 GO:0008643 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0015075 GO:0015120 GO:0015144 GO:0015318 GO:0015605 GO:0015711 GO:0015713 GO:0015717 GO:0015718 GO:0015748 GO:0015849 GO:0022857 GO:0031967 GO:0031975 GO:0034219 GO:0034220 GO:0035436 GO:0042873 GO:0042879 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071917 GO:0098656 GO:1901264 GO:1901505 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

192

Amino Acids

21.33

Weight (kDa)

8.46

Isoelectric Point (pI)

46.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPT	PF03151	11 - 192	8.6e-63	Triose-phosphate Transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002797)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17630
fragaria_vesca	FvH4_7g07680
malus_domestica	MD02G1233400.v1.1 MD04G1135700.v1.1 MD04G1135800.v1.1 MD07G1080200.v1.1
prunus_persica	Prupe.2G104200_v2.0.a1
pyrus_communis	pycom02g20160 pycom07g06380 pycom12g15330
rosa_chinensis	RchiOBHm_Chr1g0342641 RchiOBHm_Chr2g0089941 RchiOBHm_Chr2g0137951 RchiOBHm_Chr5g0045131 RchiOBHm_Chr5g0045141
rosa_laevigata	RLG00000009883 RLG00000029167 RLG00000029185
rosa_multiflora	Rmu_sc0000539.1_g000061 Rmu_sc0005365.1_g000006 Rmu_sc0007318.1_g000001 Rmu_ssc0000177.1_g000005
rosa_roxburghii	Rroxscaffold_4G00313140 Rroxscaffold_6G00402970
rosa_rugosa	Rorug01G0146900.1 Rorug04G0068400 Rorug04G0068500 Rorug04G0068600 Rorug07G0164400 Rorug07G0164400
rosa_samantha	Rh1AG165200 Rh1AG191600 Rh1BG131300 Rh1CG153800 Rh1DG166400 Rh2BG401800 Rh5BG310600 Rh5DG321000
rosa_wichuraiana	Rw1G013710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	527
AciI	CCGC	2 cut(s)	149, 431
AcsI	RAATTY	1 cut(s)	379
AfiI	CCNNNNNNNGG	3 cut(s)	91, 205, 292
AgsI	TTSAA	4 cut(s)	274, 379, 443, 461
AluBI	AGCT	4 cut(s)	251, 348, 357, 476
AluI	AGCT	4 cut(s)	251, 348, 357, 476
Alw26I	GTCTC	2 cut(s)	106, 185
Aor13HI	TCCGGA	1 cut(s)	527
AoxI	GGCC	4 cut(s)	58, 82, 93, 283
ApeKI	GCWGC	1 cut(s)	251
ApoI	RAATTY	1 cut(s)	379
ArsI	GACNNNNNNTTYG	2 cut(s)	259, 291
AspA2I	CCTAGG	1 cut(s)	184
AspS9I	GGNCC	1 cut(s)	59
AsuHPI	GGTGA	2 cut(s)	121, 277
AsuII	TTCGAA	1 cut(s)	338
AvrII	CCTAGG	1 cut(s)	184
BbvI	GCAGC	1 cut(s)	238
BccI	CCATC	3 cut(s)	365, 505, 549
BcoDI	GTCTC	2 cut(s)	106, 185
BfaI	CTAG	2 cut(s)	185, 248
BfmI	CTRYAG	1 cut(s)	477
BisI	GCNGC	1 cut(s)	252
BlnI	CCTAGG	1 cut(s)	184
BlsI	GCNGC	1 cut(s)	253
BmgT120I	GGNCC	1 cut(s)	59
BmiI	GGNNCC	2 cut(s)	153, 495
BmsI	GCATC	2 cut(s)	402, 491
Bpu14I	TTCGAA	1 cut(s)	338
BsaJI	CCNNGG	1 cut(s)	184
BsaWI	WCCGGW	1 cut(s)	527
Bsc4I	CCNNNNNNNGG	3 cut(s)	91, 205, 292
Bse1I	ACTGG	1 cut(s)	553
Bse3DI	GCAATG	2 cut(s)	313, 458
BseAI	TCCGGA	1 cut(s)	527
BseDI	CCNNGG	1 cut(s)	184
BseGI	GGATG	1 cut(s)	376
BseLI	CCNNNNNNNGG	3 cut(s)	91, 205, 292
BseMI	GCAATG	2 cut(s)	313, 458
BseMII	CTCAG	1 cut(s)	252
BseNI	ACTGG	1 cut(s)	553
BseXI	GCAGC	1 cut(s)	238
BshFI	GGCC	4 cut(s)	60, 84, 95, 285
BsiSI	CCGG	1 cut(s)	528
BslI	CCNNNNNNNGG	3 cut(s)	91, 205, 292
BsmAI	GTCTC	2 cut(s)	106, 185
BsmBI	CGTCTC	1 cut(s)	106
BsnI	GGCC	4 cut(s)	60, 84, 95, 285
Bsp119I	TTCGAA	1 cut(s)	338
Bsp13I	TCCGGA	1 cut(s)	527
BspACI	CCGC	2 cut(s)	149, 431
BspANI	GGCC	4 cut(s)	60, 84, 95, 285
BspCNI	CTCAG	1 cut(s)	253
BspEI	TCCGGA	1 cut(s)	527
BspLI	GGNNCC	2 cut(s)	153, 495
BspT104I	TTCGAA	1 cut(s)	338
BsrDI	GCAATG	2 cut(s)	313, 458
BsrI	ACTGG	1 cut(s)	553
BssECI	CCNNGG	1 cut(s)	184
BssT1I	CCWWGG	1 cut(s)	184
Bst4CI	ACNGT	1 cut(s)	52
BstBI	TTCGAA	1 cut(s)	338
BstC8I	GCNNGC	2 cut(s)	97, 350
BstDEI	CTNAG	2 cut(s)	111, 261
BstF5I	GGATG	1 cut(s)	376
BstMAI	GTCTC	2 cut(s)	106, 185
BstMWI	GCNNNNNNNGC	1 cut(s)	354
BstSFI	CTRYAG	1 cut(s)	477
BstV1I	GCAGC	1 cut(s)	238
BsuRI	GGCC	4 cut(s)	60, 84, 95, 285
BtsCI	GGATG	1 cut(s)	376
Cac8I	GCNNGC	2 cut(s)	97, 350
Cfr13I	GGNCC	1 cut(s)	59
CseI	GACGC	1 cut(s)	88
CspCI	CAANNNNNGTGG	2 cut(s)	269, 304
CviAII	CATG	2 cut(s)	32, 134
DdeI	CTNAG	2 cut(s)	111, 261
DraI	TTTAAA	1 cut(s)	361
Eco130I	CCWWGG	1 cut(s)	184
Eco147I	AGGCCT	1 cut(s)	285
EcoT14I	CCWWGG	1 cut(s)	184
ErhI	CCWWGG	1 cut(s)	184
Esp3I	CGTCTC	1 cut(s)	106
FaeI	CATG	2 cut(s)	35, 137
FatI	CATG	2 cut(s)	31, 133
Fnu4HI	GCNGC	1 cut(s)	252
FokI	GGATG	1 cut(s)	383
Fsp4HI	GCNGC	1 cut(s)	252
FspBI	CTAG	2 cut(s)	185, 248
GluI	GCNGC	1 cut(s)	252
HaeIII	GGCC	4 cut(s)	60, 84, 95, 285
HapII	CCGG	1 cut(s)	528
HgaI	GACGC	1 cut(s)	88
Hin1II	CATG	2 cut(s)	35, 137
HinfI	GANTC	1 cut(s)	220
HpaII	CCGG	1 cut(s)	528
HphI	GGTGA	2 cut(s)	121, 277
Hpy188III	TCNNGA	4 cut(s)	21, 45, 528, 572
Hpy99I	CGWCG	1 cut(s)	181
HpyAV	CCTTC	2 cut(s)	136, 437
HpyCH4III	ACNGT	1 cut(s)	52
HpyCH4V	TGCA	3 cut(s)	280, 352, 393
HpyF10VI	GCNNNNNNNGC	1 cut(s)	354
HpyF3I	CTNAG	2 cut(s)	111, 261
Hsp92II	CATG	2 cut(s)	35, 137
Kpn2I	TCCGGA	1 cut(s)	527
LmnI	GCTCC	1 cut(s)	151
Lsp1109I	GCAGC	1 cut(s)	238
LweI	GCATC	2 cut(s)	402, 491
MaeI	CTAG	2 cut(s)	185, 248
MaeIII	GTNAC	2 cut(s)	256, 265
MboII	GAAGA	1 cut(s)	215
MluCI	AATT	4 cut(s)	274, 300, 379, 402
MnlI	CCTC	2 cut(s)	256, 318
MroI	TCCGGA	1 cut(s)	527
MseI	TTAA	2 cut(s)	299, 360
MspI	CCGG	1 cut(s)	528
MwoI	GCNNNNNNNGC	1 cut(s)	354
NlaIII	CATG	2 cut(s)	35, 137
NlaIV	GGNNCC	2 cut(s)	153, 495
NmeAIII	GCCGAG	1 cut(s)	71
NmuCI	GTSAC	1 cut(s)	265
NspV	TTCGAA	1 cut(s)	338
PceI	AGGCCT	1 cut(s)	285
PfeI	GAWTC	1 cut(s)	220
PkrI	GCNGC	1 cut(s)	253
PspN4I	GGNNCC	2 cut(s)	153, 495
PspPI	GGNCC	1 cut(s)	59
SaqAI	TTAA	2 cut(s)	299, 360
SatI	GCNGC	1 cut(s)	252
Sau96I	GGNCC	1 cut(s)	59
SetI	ASST	7 cut(s)	117, 210, 253, 267, 350, 359, 478
SfaNI	GCATC	2 cut(s)	402, 491
SfcI	CTRYAG	1 cut(s)	477
SfuI	TTCGAA	1 cut(s)	338
Sse9I	AATT	4 cut(s)	274, 300, 379, 402
SseBI	AGGCCT	1 cut(s)	285
SsiI	CCGC	2 cut(s)	149, 431
SspI	AATATT	1 cut(s)	331
SspMI	CTAG	2 cut(s)	185, 248
StuI	AGGCCT	1 cut(s)	285
StyI	CCWWGG	1 cut(s)	184
TaaI	ACNGT	1 cut(s)	52
TaqI	TCGA	4 cut(s)	46, 218, 338, 557
TasI	AATT	4 cut(s)	274, 300, 379, 402
TfiI	GAWTC	1 cut(s)	220
Tru1I	TTAA	2 cut(s)	299, 360
Tru9I	TTAA	2 cut(s)	299, 360
TseFI	GTSAC	1 cut(s)	265
TseI	GCWGC	1 cut(s)	251
Tsp45I	GTSAC	1 cut(s)	265
XapI	RAATTY	1 cut(s)	379
XmaJI	CCTAGG	1 cut(s)	184
XspI	CTAG	2 cut(s)	185, 248

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.