Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002797

Physical Location & Seq

Genomic Coordinates Reverse (-)

55763567 .. 55765055

Gene Structure 1489 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ50866

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGTTGATCCTCTGGTCTCTGAAGCTCCAGCCATGCCCGAAAATCTCGAAACCGTTCATTGTTGCTCTCCTTGGCCCTGCTTTGTTCCACACCATAGGCCACATCTCGGCCTGCGTCTCATTCTCTAAGGTGGCTGTGTCCTTCACCCATGTCATCAAGTCTGCGGAGCCTGTCTTTTCGGTCTGGCTTTCGATTCTTCCTATTGTTATGGGTTGCCTGTGGGGGGCTTTAATTAGCAATGTGGGGTTTGTGTTGAGGAATATTTATTCGAAACGGAGCTTGCAGAGCTTTAAAGAAGTGGATGGGTTGAATTTGTATGGTTGCATCAGTATAATTTCTCTGTTTTATTTGTTTCCTGTGGCGGTTTTGGTTGAAGGGTCGCAATGGGTTCAAGGGTATCATAGAGCTATAGCATCTGTGGGGGAACCATCTACATTTTACTTTTGGGTGTTGTTGTCCGGAGTGTTTTACCATCTGTATAACCAGTCGAGTTATCAGGCTCTTGATGAGATTAGCCCTCTGACATTCTCAGTTGGAAACACAATGAAGAGGGTGGTGGTGATTGTGTCTACTGTGTTGGTGTTCAGAAATCCAGTTAGACCTCTTAATGCACTTGGGTCAGCTGTGGCGATATTTGGGACATTCTTGTATTCTCAGGCAACAGCTAAGAAGAAAAAGGAAGCTGAAAAGAAGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006820 GO:0008028 GO:0008150 GO:0008509 GO:0008514 GO:0008643 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0015075 GO:0015120 GO:0015144 GO:0015318 GO:0015605 GO:0015711 GO:0015713 GO:0015717 GO:0015718 GO:0015748 GO:0015849 GO:0022857 GO:0031967 GO:0031975 GO:0034219 GO:0034220 GO:0035436 GO:0042873 GO:0042879 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071917 GO:0098656 GO:1901264 GO:1901505 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

232

Amino Acids

25.67

Weight (kDa)

9.62

Isoelectric Point (pI)

46.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPT	PF03151	1 - 66	5.5e-20	Triose-phosphate Transporter family
TPT	PF03151	70 - 218	5.8e-53	Triose-phosphate Transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002797)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17630
fragaria_vesca	FvH4_7g07680
malus_domestica	MD02G1233400.v1.1 MD04G1135700.v1.1 MD04G1135800.v1.1 MD07G1080200.v1.1
prunus_persica	Prupe.2G104200_v2.0.a1
pyrus_communis	pycom02g20160 pycom07g06380 pycom12g15330
rosa_chinensis	RchiOBHm_Chr1g0342641 RchiOBHm_Chr2g0089941 RchiOBHm_Chr2g0137951 RchiOBHm_Chr5g0045131 RchiOBHm_Chr5g0045141
rosa_laevigata	RLG00000009883 RLG00000029167 RLG00000029185
rosa_multiflora	Rmu_sc0000539.1_g000061 Rmu_sc0005365.1_g000006 Rmu_sc0007318.1_g000001 Rmu_ssc0000177.1_g000005
rosa_roxburghii	Rroxscaffold_4G00313140 Rroxscaffold_6G00402970
rosa_rugosa	Rorug01G0146900.1 Rorug04G0068400 Rorug04G0068500 Rorug04G0068600 Rorug07G0164400 Rorug07G0164400
rosa_samantha	Rh1AG165200 Rh1AG191600 Rh1BG131300 Rh1CG153800 Rh1DG166400 Rh2BG401800 Rh5BG310600 Rh5DG321000
rosa_wichuraiana	Rw1G013710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	569
AccIII	TCCGGA	1 cut(s)	458
AciI	CCGC	2 cut(s)	164, 362
AcsI	RAATTY	1 cut(s)	310
AcuI	CTGAAG	1 cut(s)	41
AfiI	CCNNNNNNNGG	2 cut(s)	106, 223
AgsI	TTSAA	3 cut(s)	310, 374, 392
AluBI	AGCT	7 cut(s)	25, 279, 288, 407, 623, 665, 683
AluI	AGCT	7 cut(s)	25, 279, 288, 407, 623, 665, 683
Alw26I	GTCTC	2 cut(s)	21, 121
Aor13HI	TCCGGA	1 cut(s)	458
AoxI	GGCC	3 cut(s)	73, 97, 108
ApoI	RAATTY	1 cut(s)	310
Asp700I	GAANNNNTTC	1 cut(s)	53
AspS9I	GGNCC	1 cut(s)	74
AsuHPI	GGTGA	2 cut(s)	136, 571
AsuII	TTCGAA	1 cut(s)	269
BccI	CCATC	3 cut(s)	296, 436, 480
BcoDI	GTCTC	2 cut(s)	21, 121
BfmI	CTRYAG	1 cut(s)	408
BmgT120I	GGNCC	1 cut(s)	74
BmiI	GGNNCC	2 cut(s)	168, 426
BmsI	GCATC	2 cut(s)	333, 422
BpmI	CTGGAG	1 cut(s)	11
Bpu14I	TTCGAA	1 cut(s)	269
BsaI	GGTCTC	1 cut(s)	21
BsaJI	CCNNGG	1 cut(s)	70
BsaWI	WCCGGW	1 cut(s)	458
Bsc4I	CCNNNNNNNGG	2 cut(s)	106, 223
Bse1I	ACTGG	2 cut(s)	484, 593
Bse3DI	GCAATG	2 cut(s)	244, 389
BseAI	TCCGGA	1 cut(s)	458
BseDI	CCNNGG	1 cut(s)	70
BseGI	GGATG	1 cut(s)	307
BseLI	CCNNNNNNNGG	2 cut(s)	106, 223
BseMI	GCAATG	2 cut(s)	244, 389
BseMII	CTCAG	2 cut(s)	543, 668
BseNI	ACTGG	2 cut(s)	484, 593
BshFI	GGCC	3 cut(s)	75, 99, 110
BsiSI	CCGG	1 cut(s)	459
BslFI	GGGAC	1 cut(s)	652
BslI	CCNNNNNNNGG	2 cut(s)	106, 223
BsmAI	GTCTC	2 cut(s)	21, 121
BsmBI	CGTCTC	1 cut(s)	121
BsmFI	GGGAC	1 cut(s)	652
BsnI	GGCC	3 cut(s)	75, 99, 110
Bso31I	GGTCTC	1 cut(s)	21
Bsp119I	TTCGAA	1 cut(s)	269
Bsp13I	TCCGGA	1 cut(s)	458
Bsp143I	GATC	1 cut(s)	6
BspACI	CCGC	2 cut(s)	164, 362
BspANI	GGCC	3 cut(s)	75, 99, 110
BspCNI	CTCAG	2 cut(s)	542, 667
BspEI	TCCGGA	1 cut(s)	458
BspLI	GGNNCC	2 cut(s)	168, 426
BspT104I	TTCGAA	1 cut(s)	269
BspTNI	GGTCTC	1 cut(s)	21
BsrDI	GCAATG	2 cut(s)	244, 389
BsrI	ACTGG	2 cut(s)	484, 593
BssECI	CCNNGG	1 cut(s)	70
BssMI	GATC	1 cut(s)	6
BssT1I	CCWWGG	1 cut(s)	70
Bst4CI	ACNGT	2 cut(s)	54, 574
Bst6I	CTCTTC	1 cut(s)	542
BstBI	TTCGAA	1 cut(s)	269
BstC8I	GCNNGC	2 cut(s)	112, 281
BstDEI	CTNAG	4 cut(s)	126, 529, 654, 666
BstF5I	GGATG	1 cut(s)	307
BstKTI	GATC	1 cut(s)	9
BstMAI	GTCTC	2 cut(s)	21, 121
BstMBI	GATC	1 cut(s)	6
BstMWI	GCNNNNNNNGC	1 cut(s)	285
BstSFI	CTRYAG	1 cut(s)	408
BsuRI	GGCC	3 cut(s)	75, 99, 110
BtsCI	GGATG	1 cut(s)	307
Cac8I	GCNNGC	2 cut(s)	112, 281
Cfr13I	GGNCC	1 cut(s)	74
CseI	GACGC	1 cut(s)	103
CviAII	CATG	2 cut(s)	33, 149
DdeI	CTNAG	4 cut(s)	126, 529, 654, 666
DpnI	GATC	1 cut(s)	8
DpnII	GATC	1 cut(s)	6
DraI	TTTAAA	1 cut(s)	292
Eam1104I	CTCTTC	1 cut(s)	542
EarI	CTCTTC	1 cut(s)	542
Eco130I	CCWWGG	1 cut(s)	70
Eco31I	GGTCTC	1 cut(s)	21
Eco57I	CTGAAG	1 cut(s)	41
EcoT14I	CCWWGG	1 cut(s)	70
ErhI	CCWWGG	1 cut(s)	70
Esp3I	CGTCTC	1 cut(s)	121
FaeI	CATG	2 cut(s)	36, 152
FaiI	YATR	9 cut(s)	34, 95, 150, 209, 318, 332, 402, 410, 480
FaqI	GGGAC	1 cut(s)	652
FatI	CATG	2 cut(s)	32, 148
FblI	GTMKAC	1 cut(s)	569
FokI	GGATG	1 cut(s)	314
GsuI	CTGGAG	1 cut(s)	11
HaeIII	GGCC	3 cut(s)	75, 99, 110
HapII	CCGG	1 cut(s)	459
HgaI	GACGC	1 cut(s)	103
Hin1II	CATG	2 cut(s)	36, 152
HinfI	GANTC	1 cut(s)	193
HpaII	CCGG	1 cut(s)	459
HphI	GGTGA	2 cut(s)	136, 571
Hpy166II	GTNNAC	1 cut(s)	570
Hpy188I	TCNGA	3 cut(s)	21, 522, 587
Hpy188III	TCNNGA	3 cut(s)	46, 459, 503
Hpy8I	GTNNAC	1 cut(s)	570
HpyAV	CCTTC	2 cut(s)	151, 368
HpyCH4III	ACNGT	2 cut(s)	54, 574
HpyCH4V	TGCA	3 cut(s)	283, 324, 611
HpyF10VI	GCNNNNNNNGC	1 cut(s)	285
HpyF3I	CTNAG	4 cut(s)	126, 529, 654, 666
Hsp92II	CATG	2 cut(s)	36, 152
Kpn2I	TCCGGA	1 cut(s)	458
Kzo9I	GATC	1 cut(s)	6
LmnI	GCTCC	3 cut(s)	30, 166, 276
LweI	GCATC	2 cut(s)	333, 422
MalI	GATC	1 cut(s)	8
MboI	GATC	1 cut(s)	6
MboII	GAAGA	3 cut(s)	188, 559, 682
MluCI	AATT	4 cut(s)	231, 310, 333, 694
MmeI	TCCRAC	1 cut(s)	514
MnlI	CCTC	5 cut(s)	20, 249, 528, 543, 612
MroI	TCCGGA	1 cut(s)	458
MroXI	GAANNNNTTC	1 cut(s)	53
MseI	TTAA	3 cut(s)	230, 291, 606
MspA1I	CMGCKG	1 cut(s)	623
MspI	CCGG	1 cut(s)	459
MwoI	GCNNNNNNNGC	1 cut(s)	285
NdeII	GATC	1 cut(s)	6
NlaIII	CATG	2 cut(s)	36, 152
NlaIV	GGNNCC	2 cut(s)	168, 426
NmeAIII	GCCGAG	1 cut(s)	86
NspV	TTCGAA	1 cut(s)	269
PdmI	GAANNNNTTC	1 cut(s)	53
PfeI	GAWTC	1 cut(s)	193
PspN4I	GGNNCC	2 cut(s)	168, 426
PspPI	GGNCC	1 cut(s)	74
PvuII	CAGCTG	1 cut(s)	623
SaqAI	TTAA	3 cut(s)	230, 291, 606
Sau3AI	GATC	1 cut(s)	6
Sau96I	GGNCC	1 cut(s)	74
SetI	ASST	9 cut(s)	27, 132, 281, 290, 409, 604, 625, 667, 685
SfaNI	GCATC	2 cut(s)	333, 422
SfcI	CTRYAG	1 cut(s)	408
SfuI	TTCGAA	1 cut(s)	269
Sse9I	AATT	4 cut(s)	231, 310, 333, 694
SsiI	CCGC	2 cut(s)	164, 362
SspI	AATATT	1 cut(s)	262
StyI	CCWWGG	1 cut(s)	70
TaaI	ACNGT	2 cut(s)	54, 574
TaqI	TCGA	4 cut(s)	47, 191, 269, 488
TaqII	GACCGA	1 cut(s)	169
TasI	AATT	4 cut(s)	231, 310, 333, 694
TfiI	GAWTC	1 cut(s)	193
Tru1I	TTAA	3 cut(s)	230, 291, 606
Tru9I	TTAA	3 cut(s)	230, 291, 606
TspDTI	ATGAA	2 cut(s)	46, 560
TspGWI	ACGGA	1 cut(s)	289
XapI	RAATTY	1 cut(s)	310
XmiI	GTMKAC	1 cut(s)	569
XmnI	GAANNNNTTC	1 cut(s)	53

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.