Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005365.1

Orthogroup ID

OG0002797

Physical Location & Seq

Genomic Coordinates Reverse (-)

20786 .. 23199

Gene Structure 2414 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005365.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1218 bp

atgtcgacttttctctctgctagggttttctccctagccgagaatctgatcgagaattatgttgcgatggtggaggaaggagcagcagctactccttcattgttagttgaggccgtgacgagcctgatggggggcggagagattatcgaagtccctttcttctatctgtgtggcaggctgttgctggagaggccttcaaggcttctggtggtatcagcggcgatctctggtgtgaggagattgcaggatctgatctgtgaaaaggagggggggagtctcctaatcccaagagcaagagacgacaatctttgctcttcatggaggattttgggtagagaagaatctagaggcgtcggagttagagccggcattgctgggatcgacttggtattggtggcggccttgcctctgtgggcagcgtttatgggctcgaggttgagttcatcggcgttgtcaaggttggcggtggcgactggagatggttcgtcgatggcggaaaagggtgggctcatgctggattcgccgacggggctgccggatgctgggctttgcagggcgatggttggagcggctgcgaggattacagcaggggctgcgctactggctctgtgtatctcggcgggaaactctcttctgagaaaccctaatgggtcagtggatagtggacctggatctaggtctgggatggagttgggtgaggggtttgtggagcttgggctggttgcagctgatgttggggtggagactgggctagaattcttatgtcacatctcagcctgcgtctcattctctaaggtcgctgtgtccttcacccatgtcatcaagtctgtggagcttgtcttttcggtggtgttttcgtcgttcctaggggagacttaccctatacaggtctggctttcgattcttcctattgttatgggttgttctttagctgctgttactgagctgacattcaatttgcaaggcctgtgggggtcgcaatgggttcaaggttatcatacagctatagcatctgtggggaaaccatccacattttacttttgggtgttgttgtctggagtgttttaccatctatataaccagtcgagttatcaggctcttgatgagattagcccattgacattttctgttggaaacacaatgaagagggtggtggtgattgtgtcgactgtgttggcgaggcaacaccgttttgaggctttgcttcgctcggattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006820 GO:0008028 GO:0008150 GO:0008509 GO:0008514 GO:0008643 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0015075 GO:0015120 GO:0015144 GO:0015318 GO:0015605 GO:0015711 GO:0015713 GO:0015717 GO:0015718 GO:0015748 GO:0015849 GO:0022857 GO:0031967 GO:0031975 GO:0034219 GO:0034220 GO:0035436 GO:0042873 GO:0042879 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071917 GO:0098656 GO:1901264 GO:1901505 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

405

Amino Acids

42.93

Weight (kDa)

5.51

Isoelectric Point (pI)

41.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002797)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17630
fragaria_vesca	FvH4_7g07680
malus_domestica	MD02G1233400.v1.1 MD04G1135700.v1.1 MD04G1135800.v1.1 MD07G1080200.v1.1
prunus_persica	Prupe.2G104200_v2.0.a1
pyrus_communis	pycom02g20160 pycom07g06380 pycom12g15330
rosa_chinensis	RchiOBHm_Chr1g0342641 RchiOBHm_Chr2g0089941 RchiOBHm_Chr2g0137951 RchiOBHm_Chr5g0045131 RchiOBHm_Chr5g0045141
rosa_laevigata	RLG00000009883 RLG00000029167 RLG00000029185
rosa_multiflora	Rmu_sc0000539.1_g000061 Rmu_sc0005365.1_g000006 Rmu_sc0007318.1_g000001 Rmu_ssc0000177.1_g000005
rosa_roxburghii	Rroxscaffold_4G00313140 Rroxscaffold_6G00402970
rosa_rugosa	Rorug01G0146900.1 Rorug04G0068400 Rorug04G0068500 Rorug04G0068600 Rorug07G0164400 Rorug07G0164400
rosa_samantha	Rh1AG165200 Rh1AG191600 Rh1BG131300 Rh1CG153800 Rh1DG166400 Rh2BG401800 Rh5BG310600 Rh5DG321000
rosa_wichuraiana	Rw1G013710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	569
AccI	GTMKAC	2 cut(s)	5, 1166
AciI	CCGC	7 cut(s)	135, 218, 398, 464, 494, 569, 620
AclWI	GGATC	3 cut(s)	255, 386, 679
AcsI	RAATTY	1 cut(s)	755
AcyI	GRCGYC	1 cut(s)	351
AfiI	CCNNNNNNNGG	4 cut(s)	130, 542, 886, 1195
AgsI	TTSAA	3 cut(s)	198, 955, 989
AjnI	CCWGG	1 cut(s)	667
AluBI	AGCT	7 cut(s)	89, 712, 728, 835, 932, 946, 1004
AluI	AGCT	7 cut(s)	89, 712, 728, 835, 932, 946, 1004
Alw26I	GTCTC	5 cut(s)	281, 291, 737, 787, 866
AlwI	GGATC	3 cut(s)	255, 386, 679
AlwNI	CAGNNNCTG	2 cut(s)	250, 593
Ama87I	CYCGRG	1 cut(s)	430
AoxI	GGCC	4 cut(s)	111, 191, 399, 964
ApeKI	GCWGC	8 cut(s)	83, 86, 416, 532, 572, 593, 725, 932
ApoI	RAATTY	1 cut(s)	755
ArsI	GACNNNNNNTTYG	2 cut(s)	940, 972
AspA2I	CCTAGG	1 cut(s)	865
AspLEI	GCGC	1 cut(s)	598
AspS9I	GGNCC	1 cut(s)	665
AsuHPI	GGTGA	3 cut(s)	707, 802, 1168
AvaI	CYCGRG	1 cut(s)	430
AvaII	GGWCC	1 cut(s)	665
AvrII	CCTAGG	1 cut(s)	865
BanII	GRGCYC	2 cut(s)	431, 510
BbvI	GCAGC	8 cut(s)	95, 98, 428, 519, 559, 580, 737, 919
BccI	CCATC	8 cut(s)	61, 121, 473, 484, 553, 679, 1033, 1077
BceAI	ACGGC	1 cut(s)	98
BcgI	CGANNNNNNTGC	2 cut(s)	514, 548
BciT130I	CCWGG	1 cut(s)	669
BcoDI	GTCTC	5 cut(s)	281, 291, 737, 787, 866
BfaI	CTAG	6 cut(s)	21, 35, 345, 675, 752, 866
BfmI	CTRYAG	1 cut(s)	1005
BglI	GCCNNNNNGGC	2 cut(s)	199, 529
BlnI	CCTAGG	1 cut(s)	865
Bme1390I	CCNGG	1 cut(s)	669
Bme18I	GGWCC	1 cut(s)	665
BmeT110I	CYCGRG	1 cut(s)	430
BmgT120I	GGNCC	1 cut(s)	665
BmrFI	CCNGG	1 cut(s)	669
BmrI	ACTGGG	1 cut(s)	756
BmsI	GCATC	2 cut(s)	529, 1019
BmuI	ACTGGG	1 cut(s)	756
BpmI	CTGGAG	3 cut(s)	206, 495, 1077
BsaHI	GRCGYC	1 cut(s)	351
BsaJI	CCNNGG	1 cut(s)	865
Bsc4I	CCNNNNNNNGG	4 cut(s)	130, 542, 886, 1195
Bse118I	RCCGGY	1 cut(s)	365
Bse1I	ACTGG	4 cut(s)	478, 606, 751, 1081
Bse3DI	GCAATG	2 cut(s)	369, 986
BseBI	CCWGG	1 cut(s)	669
BseDI	CCNNGG	1 cut(s)	865
BseGI	GGATG	3 cut(s)	544, 690, 1025
BseLI	CCNNNNNNNGG	4 cut(s)	130, 542, 886, 1195
BseMI	GCAATG	2 cut(s)	369, 986
BseMII	CTCAG	3 cut(s)	626, 786, 933
BseNI	ACTGG	4 cut(s)	478, 606, 751, 1081
BseRI	GAGGAG	1 cut(s)	250
BseXI	GCAGC	8 cut(s)	95, 98, 428, 519, 559, 580, 737, 919
BseYI	CCCAGC	2 cut(s)	374, 542
BshFI	GGCC	4 cut(s)	113, 193, 401, 966
BsiHKCI	CYCGRG	1 cut(s)	430
BsiSI	CCGG	2 cut(s)	366, 536
BslFI	GGGAC	1 cut(s)	137
BslI	CCNNNNNNNGG	4 cut(s)	130, 542, 886, 1195
BsmAI	GTCTC	5 cut(s)	281, 291, 737, 787, 866
BsmBI	CGTCTC	2 cut(s)	291, 787
BsmFI	GGGAC	1 cut(s)	137
BsnI	GGCC	4 cut(s)	113, 193, 401, 966
BsoBI	CYCGRG	1 cut(s)	430
Bsp1286I	GDGCHC	2 cut(s)	431, 510
Bsp143I	GATC	6 cut(s)	48, 222, 247, 252, 378, 671
BspACI	CCGC	7 cut(s)	135, 218, 398, 464, 494, 569, 620
BspANI	GGCC	4 cut(s)	113, 193, 401, 966
BspCNI	CTCAG	3 cut(s)	627, 785, 934
BspPI	GGATC	3 cut(s)	255, 386, 679
BspQI	GCTCTTC	1 cut(s)	319
BsrBI	CCGCTC	1 cut(s)	569
BsrDI	GCAATG	2 cut(s)	369, 986
BsrFI	RCCGGY	1 cut(s)	365
BsrI	ACTGG	4 cut(s)	478, 606, 751, 1081
BssAI	RCCGGY	1 cut(s)	365
BssECI	CCNNGG	1 cut(s)	865
BssMI	GATC	6 cut(s)	48, 222, 247, 252, 378, 671
BssNI	GRCGYC	1 cut(s)	351
BssT1I	CCWWGG	1 cut(s)	865
Bst2UI	CCWGG	1 cut(s)	669
Bst4CI	ACNGT	2 cut(s)	1171, 1190
Bst6I	CTCTTC	3 cut(s)	319, 636, 1139
BstACI	GRCGYC	1 cut(s)	351
BstAPI	GCANNNNNTGC	1 cut(s)	593
BstC8I	GCNNGC	3 cut(s)	176, 367, 778
BstDEI	CTNAG	4 cut(s)	635, 772, 792, 942
BstF5I	GGATG	3 cut(s)	544, 690, 1025
BstHHI	GCGC	1 cut(s)	598
BstKTI	GATC	6 cut(s)	51, 225, 250, 255, 381, 674
BstMAI	GTCTC	5 cut(s)	281, 291, 737, 787, 866
BstMBI	GATC	6 cut(s)	48, 222, 247, 252, 378, 671
BstMWI	GCNNNNNNNGC	7 cut(s)	190, 199, 371, 520, 529, 593, 602
BstNI	CCWGG	1 cut(s)	669
BstSCI	CCNGG	1 cut(s)	667
BstSFI	CTRYAG	1 cut(s)	1005
BstV1I	GCAGC	8 cut(s)	95, 98, 428, 519, 559, 580, 737, 919
BstX2I	RGATCY	2 cut(s)	247, 671
BstYI	RGATCY	2 cut(s)	247, 671
BsuRI	GGCC	4 cut(s)	113, 193, 401, 966
BtgZI	GCGATG	2 cut(s)	80, 572
BtsCI	GGATG	3 cut(s)	544, 690, 1025
BtsIMutI	CAGTG	1 cut(s)	660
Cac8I	GCNNGC	3 cut(s)	176, 367, 778
CaiI	CAGNNNCTG	2 cut(s)	250, 593
CfoI	GCGC	1 cut(s)	598
Cfr10I	RCCGGY	1 cut(s)	365
Cfr13I	GGNCC	1 cut(s)	665
CseI	GACGC	2 cut(s)	340, 769
CspCI	CAANNNNNGTGG	2 cut(s)	950, 985
CviAII	CATG	3 cut(s)	318, 511, 815
DdeI	CTNAG	4 cut(s)	635, 772, 792, 942
DpnI	GATC	6 cut(s)	50, 224, 249, 254, 380, 673
DpnII	GATC	6 cut(s)	48, 222, 247, 252, 378, 671
Eam1104I	CTCTTC	3 cut(s)	319, 636, 1139
EarI	CTCTTC	3 cut(s)	319, 636, 1139
EciI	GGCGGA	2 cut(s)	150, 509
Eco130I	CCWWGG	1 cut(s)	865
Eco147I	AGGCCT	2 cut(s)	193, 966
Eco24I	GRGCYC	2 cut(s)	431, 510
Eco47I	GGWCC	1 cut(s)	665
Eco88I	CYCGRG	1 cut(s)	430
EcoRI	GAATTC	1 cut(s)	755
EcoRII	CCWGG	1 cut(s)	667
EcoT14I	CCWWGG	1 cut(s)	865
EcoT38I	GRGCYC	2 cut(s)	431, 510
ErhI	CCWWGG	1 cut(s)	865
Esp3I	CGTCTC	2 cut(s)	291, 787
FaeI	CATG	3 cut(s)	321, 514, 818
FaqI	GGGAC	1 cut(s)	137
FatI	CATG	3 cut(s)	317, 510, 814
FauI	CCCGC	1 cut(s)	613
FblI	GTMKAC	2 cut(s)	5, 1166
FokI	GGATG	3 cut(s)	551, 697, 1012
FriOI	GRGCYC	2 cut(s)	431, 510
FspBI	CTAG	6 cut(s)	21, 35, 345, 675, 752, 866
GlaI	GCGC	1 cut(s)	597
GsaI	CCCAGC	2 cut(s)	378, 546
GsuI	CTGGAG	3 cut(s)	206, 495, 1077
HaeIII	GGCC	4 cut(s)	113, 193, 401, 966
HapII	CCGG	2 cut(s)	366, 536
HgaI	GACGC	2 cut(s)	340, 769
HhaI	GCGC	1 cut(s)	598
Hin1I	GRCGYC	1 cut(s)	351
Hin1II	CATG	3 cut(s)	321, 514, 818
Hin6I	GCGC	1 cut(s)	596
HinP1I	GCGC	1 cut(s)	596
HincII	GTYRAC	2 cut(s)	6, 1167
HindII	GTYRAC	2 cut(s)	6, 1167
HinfI	GANTC	5 cut(s)	43, 274, 341, 518, 901
HpaII	CCGG	2 cut(s)	366, 536
HphI	GGTGA	3 cut(s)	707, 802, 1168
Hpy166II	GTNNAC	3 cut(s)	6, 665, 1167
Hpy188I	TCNGA	5 cut(s)	48, 252, 356, 636, 1213
Hpy188III	TCNNGA	4 cut(s)	52, 345, 1056, 1100
Hpy8I	GTNNAC	3 cut(s)	6, 665, 1167
Hpy99I	CGWCG	4 cut(s)	356, 490, 529, 862
HpyAV	CCTTC	4 cut(s)	71, 105, 204, 817
HpyCH4III	ACNGT	2 cut(s)	1171, 1190
HpyCH4V	TGCA	4 cut(s)	244, 552, 725, 961
HpyF10VI	GCNNNNNNNGC	7 cut(s)	190, 199, 371, 520, 529, 593, 602
HpyF3I	CTNAG	4 cut(s)	635, 772, 792, 942
Hsp92I	GRCGYC	1 cut(s)	351
Hsp92II	CATG	3 cut(s)	321, 514, 818
HspAI	GCGC	1 cut(s)	596
KroI	GCCGGC	1 cut(s)	365
KroNI	GCCGGC	1 cut(s)	367
Kzo9I	GATC	6 cut(s)	48, 222, 247, 252, 378, 671
LguI	GCTCTTC	1 cut(s)	319
LmnI	GCTCC	4 cut(s)	80, 566, 709, 832
Lsp1109I	GCAGC	8 cut(s)	95, 98, 428, 519, 559, 580, 737, 919
LweI	GCATC	2 cut(s)	529, 1019
MaeI	CTAG	6 cut(s)	21, 35, 345, 675, 752, 866
MaeIII	GTNAC	3 cut(s)	115, 764, 937
MalI	GATC	6 cut(s)	50, 224, 249, 254, 380, 673
MbiI	CCGCTC	1 cut(s)	569
MboI	GATC	6 cut(s)	48, 222, 247, 252, 378, 671
MboII	GAAGA	6 cut(s)	151, 306, 350, 623, 896, 1156
MflI	RGATCY	2 cut(s)	247, 671
MhlI	GDGCHC	2 cut(s)	431, 510
MluCI	AATT	3 cut(s)	55, 755, 955
MlyI	GAGTC	1 cut(s)	283
MmeI	TCCRAC	3 cut(s)	334, 544, 1111
MroNI	GCCGGC	1 cut(s)	365
MspA1I	CMGCKG	2 cut(s)	218, 728
MspI	CCGG	2 cut(s)	366, 536
MspR9I	CCNGG	1 cut(s)	669
MvaI	CCWGG	1 cut(s)	669
MwoI	GCNNNNNNNGC	7 cut(s)	190, 199, 371, 520, 529, 593, 602
NaeI	GCCGGC	1 cut(s)	367
NdeII	GATC	6 cut(s)	48, 222, 247, 252, 378, 671
NgoMIV	GCCGGC	1 cut(s)	365
NlaIII	CATG	3 cut(s)	321, 514, 818
NmeAIII	GCCGAG	2 cut(s)	64, 596
NmuCI	GTSAC	2 cut(s)	115, 764
PaeR7I	CTCGAG	1 cut(s)	430
PceI	AGGCCT	2 cut(s)	193, 966
PciSI	GCTCTTC	1 cut(s)	319
PdiI	GCCGGC	1 cut(s)	367
PfeI	GAWTC	4 cut(s)	43, 341, 518, 901
PleI	GAGTC	1 cut(s)	282
PpsI	GAGTC	1 cut(s)	282
Psp6I	CCWGG	1 cut(s)	667
PspFI	CCCAGC	2 cut(s)	374, 542
PspGI	CCWGG	1 cut(s)	667
PspPI	GGNCC	1 cut(s)	665
PspXI	VCTCGAGB	1 cut(s)	430
PstNI	CAGNNNCTG	2 cut(s)	250, 593
PsuI	RGATCY	2 cut(s)	247, 671
PvuII	CAGCTG	1 cut(s)	728
SalI	GTCGAC	2 cut(s)	4, 1165
SapI	GCTCTTC	1 cut(s)	319
Sau3AI	GATC	6 cut(s)	48, 222, 247, 252, 378, 671
Sau96I	GGNCC	1 cut(s)	665
SchI	GAGTC	1 cut(s)	283
ScrFI	CCNGG	1 cut(s)	669
SduI	GDGCHC	2 cut(s)	431, 510
SfaNI	GCATC	2 cut(s)	529, 1019
SfcI	CTRYAG	1 cut(s)	1005
Sfr274I	CTCGAG	1 cut(s)	430
SinI	GGWCC	1 cut(s)	665
SlaI	CTCGAG	1 cut(s)	430
SmlI	CTYRAG	1 cut(s)	430
SmoI	CTYRAG	1 cut(s)	430
Sse9I	AATT	3 cut(s)	55, 755, 955
SseBI	AGGCCT	2 cut(s)	193, 966
SsiI	CCGC	7 cut(s)	135, 218, 398, 464, 494, 569, 620
SspMI	CTAG	6 cut(s)	21, 35, 345, 675, 752, 866
StuI	AGGCCT	2 cut(s)	193, 966
StyD4I	CCNGG	1 cut(s)	667
StyI	CCWWGG	1 cut(s)	865
TaaI	ACNGT	2 cut(s)	1171, 1190
TaqI	TCGA	9 cut(s)	5, 51, 147, 381, 431, 488, 899, 1085, 1166
TasI	AATT	3 cut(s)	55, 755, 955
TauI	GCSGC	3 cut(s)	221, 401, 572
TfiI	GAWTC	4 cut(s)	43, 341, 518, 901
TscAI	CASTG	1 cut(s)	660
TseFI	GTSAC	2 cut(s)	115, 764
TseI	GCWGC	8 cut(s)	83, 86, 416, 532, 572, 593, 725, 932
Tsp45I	GTSAC	2 cut(s)	115, 764
TspDTI	ATGAA	4 cut(s)	87, 306, 432, 1157
TspRI	CASTG	1 cut(s)	660
VpaK11BI	GGWCC	1 cut(s)	665
XapI	RAATTY	1 cut(s)	755
XbaI	TCTAGA	1 cut(s)	344
XhoI	CTCGAG	1 cut(s)	430
XmaJI	CCTAGG	1 cut(s)	865
XmiI	GTMKAC	2 cut(s)	5, 1166
XspI	CTAG	6 cut(s)	21, 35, 345, 675, 752, 866

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.