Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0002797

Physical Location & Seq

Genomic Coordinates Reverse (-)

57026710 .. 57027366

Gene Structure 657 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG401800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGGGTTGTTCTCTAGCTGCTGTTACTGAGGTGACATTCAATTTGCAAGGCCTGTGGGGGGCTTTAATTAGCAATGTGGGGTTTGTGTTGAGGAATATTTATTCGAAACGGAGCTTGCAGAGCTTTAAAGAAGTGGATGGGTTGAATTTGTATGGTTGCATCAGTATAATTTCTCTGTTTTATTTGTTTCCTGTGGCGGTTTTGGTTGAAGGGTCGCAATGGGTTCAAGGGTATCATAGAGCTATAGCATCTGTGGGGGAACCATCTACATTTTACTTTTGGGTGTTGTTGTCCGGAGTGTTTTACCATCTGTATAACCAGTCGAGTTATCAGGCTCTTGATGAGATTAGCCCTCTGACATTCTCAGTTGGAAACACAATGAAGAGGGTGGTGGTGATTGTGTCTACTGTGTTGGTGTTCAGAAATCCAGTTAGACCTCTTAATGCACTTGGGTCAGCTGTGGCGATATTTGGGACATTCTTGTATTCTCAGGCAACAGCTAAGAAGAAGCTGAAAAGAAGAATTAGAAATAGGCCTCAGTTTGTTTGTTGTAGGTGCTTAGTTTTTGACCTGGTAAAATTTGTGAACTTGCTCTGGTTTATTCATCAGCTTCCAAATTTTAATAATATCTCCAGGAGTCCAGGTTTCTTTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006820 GO:0008028 GO:0008150 GO:0008509 GO:0008514 GO:0008643 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0015075 GO:0015120 GO:0015144 GO:0015318 GO:0015605 GO:0015711 GO:0015713 GO:0015717 GO:0015718 GO:0015748 GO:0015849 GO:0022857 GO:0031967 GO:0031975 GO:0034219 GO:0034220 GO:0035436 GO:0042873 GO:0042879 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071917 GO:0098656 GO:1901264 GO:1901505 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

218

Amino Acids

24.59

Weight (kDa)

9.8

Isoelectric Point (pI)

54.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPT	PF03151	1 - 163	3.5e-61	Triose-phosphate Transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Publication-ready

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Orthologous Genes (Group: OG0002797)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17630
fragaria_vesca	FvH4_7g07680
malus_domestica	MD02G1233400.v1.1 MD04G1135700.v1.1 MD04G1135800.v1.1 MD07G1080200.v1.1
prunus_persica	Prupe.2G104200_v2.0.a1
pyrus_communis	pycom02g20160 pycom07g06380 pycom12g15330
rosa_chinensis	RchiOBHm_Chr1g0342641 RchiOBHm_Chr2g0089941 RchiOBHm_Chr2g0137951 RchiOBHm_Chr5g0045131 RchiOBHm_Chr5g0045141
rosa_laevigata	RLG00000009883 RLG00000029167 RLG00000029185
rosa_multiflora	Rmu_sc0000539.1_g000061 Rmu_sc0005365.1_g000006 Rmu_sc0007318.1_g000001 Rmu_ssc0000177.1_g000005
rosa_roxburghii	Rroxscaffold_4G00313140 Rroxscaffold_6G00402970
rosa_rugosa	Rorug01G0146900.1 Rorug04G0068400 Rorug04G0068500 Rorug04G0068600 Rorug07G0164400 Rorug07G0164400
rosa_samantha	Rh1AG165200 Rh1AG191600 Rh1BG131300 Rh1CG153800 Rh1DG166400 Rh2BG401800 Rh5BG310600 Rh5DG321000
rosa_wichuraiana	Rw1G013710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	404
AccIII	TCCGGA	1 cut(s)	293
AciI	CCGC	1 cut(s)	197
AcsI	RAATTY	3 cut(s)	145, 578, 616
AfiI	CCNNNNNNNGG	1 cut(s)	58
AgsI	TTSAA	4 cut(s)	40, 145, 209, 227
AjnI	CCWGG	3 cut(s)	570, 632, 640
AluBI	AGCT	8 cut(s)	17, 114, 123, 242, 458, 500, 511, 610
AluI	AGCT	8 cut(s)	17, 114, 123, 242, 458, 500, 511, 610
Aor13HI	TCCGGA	1 cut(s)	293
AoxI	GGCC	2 cut(s)	49, 533
ApeKI	GCWGC	1 cut(s)	17
ApoI	RAATTY	3 cut(s)	145, 578, 616
ArsI	GACNNNNNNTTYG	2 cut(s)	25, 57
AsuHPI	GGTGA	2 cut(s)	43, 406
AsuII	TTCGAA	1 cut(s)	104
BbvI	GCAGC	1 cut(s)	4
BccI	CCATC	3 cut(s)	131, 271, 315
BciT130I	CCWGG	3 cut(s)	572, 634, 642
BfaI	CTAG	1 cut(s)	14
BfmI	CTRYAG	1 cut(s)	243
BisI	GCNGC	1 cut(s)	18
BlsI	GCNGC	1 cut(s)	19
Bme1390I	CCNGG	3 cut(s)	572, 634, 642
BmiI	GGNNCC	1 cut(s)	261
BmrFI	CCNGG	3 cut(s)	572, 634, 642
BmsI	GCATC	2 cut(s)	168, 257
BpmI	CTGGAG	1 cut(s)	616
Bpu14I	TTCGAA	1 cut(s)	104
BsaWI	WCCGGW	1 cut(s)	293
BsaXI	ACNNNNNCTCC	1 cut(s)	628
Bsc4I	CCNNNNNNNGG	1 cut(s)	58
Bse1I	ACTGG	2 cut(s)	319, 428
Bse3DI	GCAATG	2 cut(s)	79, 224
BseAI	TCCGGA	1 cut(s)	293
BseBI	CCWGG	3 cut(s)	572, 634, 642
BseGI	GGATG	1 cut(s)	142
BseLI	CCNNNNNNNGG	1 cut(s)	58
BseMI	GCAATG	2 cut(s)	79, 224
BseMII	CTCAG	4 cut(s)	18, 378, 503, 551
BseNI	ACTGG	2 cut(s)	319, 428
BseXI	GCAGC	1 cut(s)	4
BshFI	GGCC	2 cut(s)	51, 535
BsiSI	CCGG	1 cut(s)	294
BslFI	GGGAC	1 cut(s)	487
BslI	CCNNNNNNNGG	1 cut(s)	58
BsmFI	GGGAC	1 cut(s)	487
BsnI	GGCC	2 cut(s)	51, 535
Bsp119I	TTCGAA	1 cut(s)	104
Bsp13I	TCCGGA	1 cut(s)	293
BspACI	CCGC	1 cut(s)	197
BspANI	GGCC	2 cut(s)	51, 535
BspCNI	CTCAG	4 cut(s)	19, 377, 502, 550
BspEI	TCCGGA	1 cut(s)	293
BspHI	TCATGA	1 cut(s)	653
BspLI	GGNNCC	1 cut(s)	261
BspT104I	TTCGAA	1 cut(s)	104
BsrDI	GCAATG	2 cut(s)	79, 224
BsrI	ACTGG	2 cut(s)	319, 428
Bst2UI	CCWGG	3 cut(s)	572, 634, 642
Bst4CI	ACNGT	1 cut(s)	409
Bst6I	CTCTTC	1 cut(s)	377
BstBI	TTCGAA	1 cut(s)	104
BstC8I	GCNNGC	1 cut(s)	116
BstDEI	CTNAG	6 cut(s)	27, 364, 489, 501, 537, 559
BstF5I	GGATG	1 cut(s)	142
BstMWI	GCNNNNNNNGC	1 cut(s)	120
BstNI	CCWGG	3 cut(s)	572, 634, 642
BstSCI	CCNGG	3 cut(s)	570, 632, 640
BstSFI	CTRYAG	1 cut(s)	243
BstV1I	GCAGC	1 cut(s)	4
BsuRI	GGCC	2 cut(s)	51, 535
BtsCI	GGATG	1 cut(s)	142
Cac8I	GCNNGC	1 cut(s)	116
CciI	TCATGA	1 cut(s)	653
CsiI	ACCWGGT	1 cut(s)	570
CspCI	CAANNNNNGTGG	2 cut(s)	35, 70
CviAII	CATG	1 cut(s)	654
DdeI	CTNAG	6 cut(s)	27, 364, 489, 501, 537, 559
DraI	TTTAAA	1 cut(s)	127
Eam1104I	CTCTTC	1 cut(s)	377
EarI	CTCTTC	1 cut(s)	377
Eco147I	AGGCCT	2 cut(s)	51, 535
EcoRII	CCWGG	3 cut(s)	570, 632, 640
FaeI	CATG	1 cut(s)	657
FaiI	YATR	6 cut(s)	153, 167, 237, 245, 315, 655
FaqI	GGGAC	1 cut(s)	487
FatI	CATG	1 cut(s)	653
FblI	GTMKAC	1 cut(s)	404
Fnu4HI	GCNGC	1 cut(s)	18
FokI	GGATG	1 cut(s)	149
Fsp4HI	GCNGC	1 cut(s)	18
FspBI	CTAG	1 cut(s)	14
GluI	GCNGC	1 cut(s)	18
GsuI	CTGGAG	1 cut(s)	616
HaeIII	GGCC	2 cut(s)	51, 535
HapII	CCGG	1 cut(s)	294
Hin1II	CATG	1 cut(s)	657
HinfI	GANTC	1 cut(s)	637
HpaII	CCGG	1 cut(s)	294
HphI	GGTGA	2 cut(s)	43, 406
Hpy166II	GTNNAC	2 cut(s)	405, 586
Hpy188I	TCNGA	2 cut(s)	357, 422
Hpy188III	TCNNGA	3 cut(s)	294, 338, 654
Hpy8I	GTNNAC	2 cut(s)	405, 586
HpyAV	CCTTC	1 cut(s)	203
HpyCH4III	ACNGT	1 cut(s)	409
HpyCH4V	TGCA	4 cut(s)	46, 118, 159, 446
HpyF10VI	GCNNNNNNNGC	1 cut(s)	120
HpyF3I	CTNAG	6 cut(s)	27, 364, 489, 501, 537, 559
Hsp92II	CATG	1 cut(s)	657
Kpn2I	TCCGGA	1 cut(s)	293
LmnI	GCTCC	1 cut(s)	111
Lsp1109I	GCAGC	1 cut(s)	4
LweI	GCATC	2 cut(s)	168, 257
MabI	ACCWGGT	1 cut(s)	570
MaeI	CTAG	1 cut(s)	14
MaeIII	GTNAC	2 cut(s)	22, 31
MboII	GAAGA	3 cut(s)	394, 517, 531
MluCI	AATT	7 cut(s)	40, 66, 145, 168, 522, 578, 616
MlyI	GAGTC	1 cut(s)	646
MmeI	TCCRAC	1 cut(s)	349
MnlI	CCTC	6 cut(s)	22, 84, 363, 378, 447, 546
MroI	TCCGGA	1 cut(s)	293
MseI	TTAA	4 cut(s)	65, 126, 441, 621
MspA1I	CMGCKG	1 cut(s)	458
MspI	CCGG	1 cut(s)	294
MspR9I	CCNGG	3 cut(s)	572, 634, 642
MvaI	CCWGG	3 cut(s)	572, 634, 642
MwoI	GCNNNNNNNGC	1 cut(s)	120
NlaIII	CATG	1 cut(s)	657
NlaIV	GGNNCC	1 cut(s)	261
NmuCI	GTSAC	1 cut(s)	31
NspV	TTCGAA	1 cut(s)	104
PagI	TCATGA	1 cut(s)	653
PceI	AGGCCT	2 cut(s)	51, 535
PfoI	TCCNGGA	1 cut(s)	632
PkrI	GCNGC	1 cut(s)	19
PleI	GAGTC	1 cut(s)	645
PpsI	GAGTC	1 cut(s)	645
Psp6I	CCWGG	3 cut(s)	570, 632, 640
PspGI	CCWGG	3 cut(s)	570, 632, 640
PspN4I	GGNNCC	1 cut(s)	261
PvuII	CAGCTG	1 cut(s)	458
SaqAI	TTAA	4 cut(s)	65, 126, 441, 621
SatI	GCNGC	1 cut(s)	18
SchI	GAGTC	1 cut(s)	646
ScrFI	CCNGG	3 cut(s)	572, 634, 642
SexAI	ACCWGGT	1 cut(s)	570
SfaNI	GCATC	2 cut(s)	168, 257
SfcI	CTRYAG	1 cut(s)	243
SfuI	TTCGAA	1 cut(s)	104
Sse9I	AATT	7 cut(s)	40, 66, 145, 168, 522, 578, 616
SseBI	AGGCCT	2 cut(s)	51, 535
SsiI	CCGC	1 cut(s)	197
SspI	AATATT	1 cut(s)	97
SspMI	CTAG	1 cut(s)	14
StuI	AGGCCT	2 cut(s)	51, 535
StyD4I	CCNGG	3 cut(s)	570, 632, 640
TaaI	ACNGT	1 cut(s)	409
TaqI	TCGA	2 cut(s)	104, 323
TasI	AATT	7 cut(s)	40, 66, 145, 168, 522, 578, 616
Tru1I	TTAA	4 cut(s)	65, 126, 441, 621
Tru9I	TTAA	4 cut(s)	65, 126, 441, 621
TseFI	GTSAC	1 cut(s)	31
TseI	GCWGC	1 cut(s)	17
Tsp45I	GTSAC	1 cut(s)	31
TspDTI	ATGAA	3 cut(s)	395, 593, 642
TspGWI	ACGGA	1 cut(s)	124
XapI	RAATTY	3 cut(s)	145, 578, 616
XmiI	GTMKAC	1 cut(s)	404
XspI	CTAG	1 cut(s)	14

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.