Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0002797

Physical Location & Seq

Genomic Coordinates Reverse (-)

10697710 .. 10701311

Gene Structure 3602 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0068400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1164 bp

ATGTGGGATTGTGCAAGGTCTACAACAATGATATGGTTCAACCGAAACATGGAAACTATTTCTAAGAGATCTATATTTGCTTGGAAATGGTTGAATGATAGGTCAGCGAAGCATTGGAGTAGATCACACTTTAATATACAAGCTAAGTGTGACATTTTATTAAACAACTTGTGTGAGTCATATAACGCAAGCATCCTAGAGTCCAGAAAGAAGCCAATACTAACTAGCTTGGAGGAGATGAGAGTAAGTACAATGGTCAGGTTGGCTAATAGGAGAAATTCTGGGTCTAAGTGGAGAAGTAAAGTAGGTCCAAGAATAGAGAAGTTGATCAAGAAGAACGCTGATAGGAGTCATGAATACACTCCACTTGAGTCTGCGCACATGAGGTTTGAAGTACATGGCAAGGGTGTTGCATGTGCTTCTGGTGTAGTGTCTCAGCATTATGTGCAGTTGGATAAGAAATCATGCTCATGTCAGAGATGGGATCTAAGTGGAATTCCATGTGCACATGCAATTGCAGCAATTTACTCTAAGGGGCTATCACCTGATGACTTTGTGGATGAGTGCTTTACGAAGAAGAGATACATGATGGCATATGAGCCAGTGATCAACCCAATCCCTGGAGTTGATGAATGGGAGCAAATAAACAGACCAATTGTGCCTCCAAAGTTCAGAAAACTTCCTGGAAGGCCAAAGATGAGCAGGAATAAAGAACCAGGTGAGGATCCACCACCAGCTGGAACTACAAAACTGCCTAAAAGTTATTACAGTCAAATTACTTGTACGCTCTGTAAGGTTAAAGGGCATAATCGCAGAACCTGTGCTAGACGATCTAAGACTAGTACATCTCAACCAAGGGCCCATGTTCCTAATGACAATTTAGCAGAAAATGTGATGAATGAAAATTTAAATAGTGATGGGAATGTCAGAGCTGAACAAGAAAGCATGGAGAATTCATTGCAACAATTATCACCGCAAAATGGAGATGTGCAAGTGCCAAATGATTCCTTAATTTTGGATGTGCATTTCAATGTTCCAACACAACAAGTAACTGCCCAGATGAAGAGAGGCAAGTTAACTACAAGGAAGATGCACCCAATAAAGCCAATGAAGCCTCAAAATGGACCAAATGAGGGAGCCGTTAGACCCATTTGGAAGCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006820 GO:0008028 GO:0008150 GO:0008509 GO:0008514 GO:0008643 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0015075 GO:0015120 GO:0015144 GO:0015318 GO:0015605 GO:0015711 GO:0015713 GO:0015717 GO:0015718 GO:0015748 GO:0015849 GO:0022857 GO:0031967 GO:0031975 GO:0034219 GO:0034220 GO:0035436 GO:0042873 GO:0042879 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071917 GO:0098656 GO:1901264 GO:1901505 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

387

Amino Acids

44.15

Weight (kDa)

9.71

Isoelectric Point (pI)

54.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SWIM	PF04434	149 - 178	4.6e-11	SWIM zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002797)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17630
fragaria_vesca	FvH4_7g07680
malus_domestica	MD02G1233400.v1.1 MD04G1135700.v1.1 MD04G1135800.v1.1 MD07G1080200.v1.1
prunus_persica	Prupe.2G104200_v2.0.a1
pyrus_communis	pycom02g20160 pycom07g06380 pycom12g15330
rosa_chinensis	RchiOBHm_Chr1g0342641 RchiOBHm_Chr2g0089941 RchiOBHm_Chr2g0137951 RchiOBHm_Chr5g0045131 RchiOBHm_Chr5g0045141
rosa_laevigata	RLG00000009883 RLG00000029167 RLG00000029185
rosa_multiflora	Rmu_sc0000539.1_g000061 Rmu_sc0005365.1_g000006 Rmu_sc0007318.1_g000001 Rmu_ssc0000177.1_g000005
rosa_roxburghii	Rroxscaffold_4G00313140 Rroxscaffold_6G00402970
rosa_rugosa	Rorug01G0146900.1 Rorug04G0068400 Rorug04G0068500 Rorug04G0068600 Rorug07G0164400 Rorug07G0164400
rosa_samantha	Rh1AG165200 Rh1AG191600 Rh1BG131300 Rh1CG153800 Rh1DG166400 Rh2BG401800 Rh5BG310600 Rh5DG321000
rosa_wichuraiana	Rw1G013710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	378
AccB7I	CCANNNNNTGG	2 cut(s)	620, 737
AccI	GTMKAC	1 cut(s)	20
AciI	CCGC	1 cut(s)	974
AclWI	GGATC	3 cut(s)	492, 719, 732
AcsI	RAATTY	4 cut(s)	277, 495, 904, 952
AfaI	GTAC	4 cut(s)	250, 396, 784, 844
AfiI	CCNNNNNNNGG	6 cut(s)	49, 620, 737, 980, 1121, 1133
AgsI	TTSAA	4 cut(s)	40, 94, 392, 1030
AhlI	ACTAGT	1 cut(s)	839
AjnI	CCWGG	3 cut(s)	619, 682, 715
AluBI	AGCT	4 cut(s)	143, 228, 737, 932
AluI	AGCT	4 cut(s)	143, 228, 737, 932
Alw21I	GWGCWC	1 cut(s)	508
Alw26I	GTCTC	1 cut(s)	438
Alw44I	GTGCAC	1 cut(s)	504
AlwI	GGATC	3 cut(s)	492, 719, 732
AlwNI	CAGNNNCTG	1 cut(s)	819
AoxI	GGCC	2 cut(s)	689, 858
ApaI	GGGCCC	1 cut(s)	862
ApaLI	GTGCAC	1 cut(s)	504
ApeKI	GCWGC	1 cut(s)	518
ApoI	RAATTY	4 cut(s)	277, 495, 904, 952
AspLEI	GCGC	1 cut(s)	379
AspS9I	GGNCC	4 cut(s)	308, 858, 859, 1124
AsuHPI	GGTGA	3 cut(s)	534, 731, 963
AvaII	GGWCC	2 cut(s)	308, 1124
BaeGI	GKGCMC	2 cut(s)	508, 862
BamHI	GGATCC	1 cut(s)	724
BanII	GRGCYC	1 cut(s)	862
BarI	GAAGNNNNNNTAC	2 cut(s)	566, 598
Bbv12I	GWGCWC	1 cut(s)	508
BbvI	GCAGC	1 cut(s)	530
BccI	CCATC	3 cut(s)	474, 583, 911
BceAI	ACGGC	1 cut(s)	1124
BciT130I	CCWGG	3 cut(s)	621, 684, 717
BclI	TGATCA	2 cut(s)	327, 606
BcoDI	GTCTC	1 cut(s)	438
BcuI	ACTAGT	1 cut(s)	839
BfaI	CTAG	4 cut(s)	197, 225, 825, 840
BglII	AGATCT	1 cut(s)	68
BisI	GCNGC	1 cut(s)	519
BlsI	GCNGC	1 cut(s)	520
Bme1390I	CCNGG	3 cut(s)	621, 684, 717
Bme18I	GGWCC	2 cut(s)	308, 1124
BmgT120I	GGNCC	4 cut(s)	308, 858, 859, 1124
BmiI	GGNNCC	3 cut(s)	726, 860, 1138
BmrFI	CCNGG	3 cut(s)	621, 684, 717
BmsI	GCATC	2 cut(s)	201, 1080
BpmI	CTGGAG	1 cut(s)	642
BpuEI	CTTGAG	1 cut(s)	389
BsaJI	CCNNGG	2 cut(s)	619, 854
Bsc4I	CCNNNNNNNGG	6 cut(s)	49, 620, 737, 980, 1121, 1133
Bse1I	ACTGG	1 cut(s)	602
Bse3DI	GCAATG	1 cut(s)	956
BseBI	CCWGG	3 cut(s)	621, 684, 717
BseDI	CCNNGG	2 cut(s)	619, 854
BseGI	GGATG	3 cut(s)	192, 565, 1024
BseLI	CCNNNNNNNGG	6 cut(s)	49, 620, 737, 980, 1121, 1133
BseMI	GCAATG	1 cut(s)	956
BseMII	CTCAG	1 cut(s)	449
BseNI	ACTGG	1 cut(s)	602
BseRI	GAGGAG	1 cut(s)	248
BseSI	GKGCMC	2 cut(s)	508, 862
BseXI	GCAGC	1 cut(s)	530
BsgI	GTGCAG	1 cut(s)	467
BshFI	GGCC	2 cut(s)	691, 860
BsiHKAI	GWGCWC	1 cut(s)	508
BslI	CCNNNNNNNGG	6 cut(s)	49, 620, 737, 980, 1121, 1133
BsmAI	GTCTC	1 cut(s)	438
BsnI	GGCC	2 cut(s)	691, 860
Bsp120I	GGGCCC	1 cut(s)	858
Bsp1286I	GDGCHC	2 cut(s)	508, 862
Bsp143I	GATC	7 cut(s)	68, 122, 327, 484, 606, 724, 830
BspACI	CCGC	1 cut(s)	974
BspANI	GGCC	2 cut(s)	691, 860
BspCNI	CTCAG	1 cut(s)	448
BspHI	TCATGA	1 cut(s)	352
BspLI	GGNNCC	3 cut(s)	726, 860, 1138
BspPI	GGATC	3 cut(s)	492, 719, 732
BsrDI	GCAATG	1 cut(s)	956
BsrI	ACTGG	1 cut(s)	602
BssECI	CCNNGG	2 cut(s)	619, 854
BssMI	GATC	7 cut(s)	68, 122, 327, 484, 606, 724, 830
BssT1I	CCWWGG	1 cut(s)	854
Bst2UI	CCWGG	3 cut(s)	621, 684, 717
Bst4CI	ACNGT	1 cut(s)	770
Bst6I	CTCTTC	2 cut(s)	572, 1058
BstAPI	GCANNNNNTGC	1 cut(s)	445
BstC8I	GCNNGC	1 cut(s)	190
BstDEI	CTNAG	7 cut(s)	63, 144, 288, 435, 488, 531, 834
BstF5I	GGATG	3 cut(s)	192, 565, 1024
BstHHI	GCGC	1 cut(s)	379
BstKTI	GATC	7 cut(s)	71, 125, 330, 487, 609, 727, 833
BstMAI	GTCTC	1 cut(s)	438
BstMBI	GATC	7 cut(s)	68, 122, 327, 484, 606, 724, 830
BstMWI	GCNNNNNNNGC	3 cut(s)	445, 518, 1111
BstNI	CCWGG	3 cut(s)	621, 684, 717
BstNSI	RCATGY	2 cut(s)	417, 512
BstSCI	CCNGG	3 cut(s)	619, 682, 715
BstSLI	GKGCMC	2 cut(s)	508, 862
BstV1I	GCAGC	1 cut(s)	530
BstX2I	RGATCY	3 cut(s)	68, 484, 724
BstYI	RGATCY	3 cut(s)	68, 484, 724
BsuRI	GGCC	2 cut(s)	691, 860
BtsCI	GGATG	3 cut(s)	192, 565, 1024
BtsIMutI	CAGTG	1 cut(s)	609
Cac8I	GCNNGC	1 cut(s)	190
CaiI	CAGNNNCTG	1 cut(s)	819
CciI	TCATGA	1 cut(s)	352
CfoI	GCGC	1 cut(s)	379
Cfr13I	GGNCC	4 cut(s)	308, 858, 859, 1124
CsiI	ACCWGGT	1 cut(s)	715
Csp6I	GTAC	4 cut(s)	249, 395, 783, 843
CviQI	GTAC	4 cut(s)	249, 395, 783, 843
DdeI	CTNAG	7 cut(s)	63, 144, 288, 435, 488, 531, 834
DpnI	GATC	7 cut(s)	70, 124, 329, 486, 608, 726, 832
DpnII	GATC	7 cut(s)	68, 122, 327, 484, 606, 724, 830
DraI	TTTAAA	1 cut(s)	909
Eam1104I	CTCTTC	2 cut(s)	572, 1058
EarI	CTCTTC	2 cut(s)	572, 1058
Eco130I	CCWWGG	1 cut(s)	854
Eco24I	GRGCYC	1 cut(s)	862
Eco47I	GGWCC	2 cut(s)	308, 1124
EcoO109I	RGGNCCY	1 cut(s)	858
EcoRI	GAATTC	2 cut(s)	495, 952
EcoRII	CCWGG	3 cut(s)	619, 682, 715
EcoT14I	CCWWGG	1 cut(s)	854
EcoT38I	GRGCYC	1 cut(s)	862
ErhI	CCWWGG	1 cut(s)	854
FauNDI	CATATG	1 cut(s)	595
FbaI	TGATCA	2 cut(s)	327, 606
FblI	GTMKAC	1 cut(s)	20
Fnu4HI	GCNGC	1 cut(s)	519
FokI	GGATG	3 cut(s)	179, 572, 1031
FriOI	GRGCYC	1 cut(s)	862
Fsp4HI	GCNGC	1 cut(s)	519
FspBI	CTAG	4 cut(s)	197, 225, 825, 840
FspI	TGCGCA	1 cut(s)	378
GlaI	GCGC	1 cut(s)	378
GluI	GCNGC	1 cut(s)	519
GsuI	CTGGAG	1 cut(s)	642
HaeIII	GGCC	2 cut(s)	691, 860
HhaI	GCGC	1 cut(s)	379
Hin6I	GCGC	1 cut(s)	377
HinP1I	GCGC	1 cut(s)	377
HincII	GTYRAC	1 cut(s)	1077
HindII	GTYRAC	1 cut(s)	1077
HinfI	GANTC	5 cut(s)	176, 200, 349, 371, 1004
HpaI	GTTAAC	1 cut(s)	1077
HphI	GGTGA	3 cut(s)	534, 731, 963
Hpy166II	GTNNAC	3 cut(s)	21, 506, 1077
Hpy188I	TCNGA	3 cut(s)	477, 674, 929
Hpy188III	TCNNGA	3 cut(s)	204, 331, 353
Hpy8I	GTNNAC	3 cut(s)	21, 506, 1077
HpyAV	CCTTC	1 cut(s)	681
HpyCH4III	ACNGT	1 cut(s)	770
HpyF10VI	GCNNNNNNNGC	3 cut(s)	445, 518, 1111
HpyF3I	CTNAG	7 cut(s)	63, 144, 288, 435, 488, 531, 834
HspAI	GCGC	1 cut(s)	377
Ksp22I	TGATCA	2 cut(s)	327, 606
KspAI	GTTAAC	1 cut(s)	1077
Kzo9I	GATC	7 cut(s)	68, 122, 327, 484, 606, 724, 830
LmnI	GCTCC	2 cut(s)	637, 1136
Lsp1109I	GCAGC	1 cut(s)	530
LweI	GCATC	2 cut(s)	201, 1080
MabI	ACCWGGT	1 cut(s)	715
MaeI	CTAG	4 cut(s)	197, 225, 825, 840
MaeIII	GTNAC	2 cut(s)	149, 1048
MalI	GATC	7 cut(s)	70, 124, 329, 486, 608, 726, 832
MboI	GATC	7 cut(s)	68, 122, 327, 484, 606, 724, 830
MboII	GAAGA	5 cut(s)	346, 586, 589, 1075, 1099
MfeI	CAATTG	2 cut(s)	513, 654
MflI	RGATCY	3 cut(s)	68, 484, 724
MhlI	GDGCHC	2 cut(s)	508, 862
MlyI	GAGTC	4 cut(s)	185, 209, 358, 380
MmeI	TCCRAC	2 cut(s)	432, 1061
MnlI	CCTC	7 cut(s)	226, 378, 672, 715, 1061, 1125, 1126
MseI	TTAA	7 cut(s)	132, 161, 798, 908, 1010, 1076, 1162
MslI	CAYNNNNRTG	2 cut(s)	469, 1029
MspA1I	CMGCKG	1 cut(s)	737
MspR9I	CCNGG	3 cut(s)	621, 684, 717
MunI	CAATTG	2 cut(s)	513, 654
MvaI	CCWGG	3 cut(s)	621, 684, 717
MwoI	GCNNNNNNNGC	3 cut(s)	445, 518, 1111
NdeI	CATATG	1 cut(s)	595
NdeII	GATC	7 cut(s)	68, 122, 327, 484, 606, 724, 830
NlaIV	GGNNCC	3 cut(s)	726, 860, 1138
NmuCI	GTSAC	1 cut(s)	149
NsbI	TGCGCA	1 cut(s)	378
NspI	RCATGY	2 cut(s)	417, 512
PagI	TCATGA	1 cut(s)	352
PfeI	GAWTC	1 cut(s)	1004
PflMI	CCANNNNNTGG	2 cut(s)	620, 737
PfoI	TCCNGGA	1 cut(s)	682
PkrI	GCNGC	1 cut(s)	520
PleI	GAGTC	4 cut(s)	184, 208, 357, 379
PpsI	GAGTC	4 cut(s)	184, 208, 357, 379
Psp6I	CCWGG	3 cut(s)	619, 682, 715
PspGI	CCWGG	3 cut(s)	619, 682, 715
PspN4I	GGNNCC	3 cut(s)	726, 860, 1138
PspOMI	GGGCCC	1 cut(s)	858
PspPI	GGNCC	4 cut(s)	308, 858, 859, 1124
PstNI	CAGNNNCTG	1 cut(s)	819
PsuI	RGATCY	3 cut(s)	68, 484, 724
PvuII	CAGCTG	1 cut(s)	737
RsaI	GTAC	4 cut(s)	250, 396, 784, 844
RsaNI	GTAC	4 cut(s)	249, 395, 783, 843
RseI	CAYNNNNRTG	2 cut(s)	469, 1029
SaqAI	TTAA	7 cut(s)	132, 161, 798, 908, 1010, 1076, 1162
SatI	GCNGC	1 cut(s)	519
Sau3AI	GATC	7 cut(s)	68, 122, 327, 484, 606, 724, 830
Sau96I	GGNCC	4 cut(s)	308, 858, 859, 1124
SchI	GAGTC	4 cut(s)	185, 209, 358, 380
ScrFI	CCNGG	3 cut(s)	621, 684, 717
SduI	GDGCHC	2 cut(s)	508, 862
SexAI	ACCWGGT	1 cut(s)	715
SfaNI	GCATC	2 cut(s)	201, 1080
SinI	GGWCC	2 cut(s)	308, 1124
SmiI	ATTTAAAT	1 cut(s)	909
SmiMI	CAYNNNNRTG	2 cut(s)	469, 1029
SmlI	CTYRAG	1 cut(s)	368
SmoI	CTYRAG	1 cut(s)	368
SpeI	ACTAGT	1 cut(s)	839
SsiI	CCGC	1 cut(s)	974
SspMI	CTAG	4 cut(s)	197, 225, 825, 840
StyD4I	CCNGG	3 cut(s)	619, 682, 715
StyI	CCWWGG	1 cut(s)	854
SwaI	ATTTAAAT	1 cut(s)	909
TaaI	ACNGT	1 cut(s)	770
TatI	WGTACW	3 cut(s)	248, 394, 842
TfiI	GAWTC	1 cut(s)	1004
Tru1I	TTAA	7 cut(s)	132, 161, 798, 908, 1010, 1076, 1162
Tru9I	TTAA	7 cut(s)	132, 161, 798, 908, 1010, 1076, 1162
TscAI	CASTG	1 cut(s)	609
TseFI	GTSAC	1 cut(s)	149
TseI	GCWGC	1 cut(s)	518
Tsp45I	GTSAC	1 cut(s)	149
TspDTI	ATGAA	7 cut(s)	369, 645, 911, 915, 945, 1076, 1124
TspRI	CASTG	1 cut(s)	609
Van91I	CCANNNNNTGG	2 cut(s)	620, 737
VneI	GTGCAC	1 cut(s)	504
VpaK11BI	GGWCC	2 cut(s)	308, 1124
XapI	RAATTY	4 cut(s)	277, 495, 904, 952
XceI	RCATGY	2 cut(s)	417, 512
XmiI	GTMKAC	1 cut(s)	20
XspI	CTAG	4 cut(s)	197, 225, 825, 840

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.