Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0002797

Physical Location & Seq

Genomic Coordinates Forward (+)

10712334 .. 10715158

Gene Structure 2825 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0068600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2043 bp

ATGCTCTACTTCTCATGCTCCATTTCTAAGCTGAAGCTTAGTCGACTCCTCTCTCTAAGCCTTACCAAATCCCTGTGTACTGCAGCTGCAACCTCTTTCTTTCAAACCCAGAATCTAAAGCCCCTCAACTCCAAAATCTCAACCTACATGCGCAATGGGTTTGTCGAAGAAGCCCAGAAGCTGTTCGACGAAATGCCTCACAGAAACACCGTCACCTGGAACGCCATGATTCGTGGGTACTTTCTAAACGGGCAGTTCCATGATGCGGTCAGTTTGTTTAATCGGATGACTGAGCGGGATGTCTTCTCGTATAACACGGTGATTGCCGGGTTGATGCAATGTGGGGATGTGGAGGGTGCTAGGCGAGTCTTCGACGGGATGGTTTTCCGAGACGTTGTGACTTGGAATTCAATGATTTCCGGGTATATTCGTAATGACAGGATTGGTGGAGCGTTGCAAGTGTTTGATGGGATGCAGGTGAAGGATGTGGTTTCTTGGAATTTGGTTGTTGGGGGACTTGTGAAGTATGGGGAGATTGATTTGGCTGAGGAGTATTTTAAGAAGATGAGCATTCGAGATTGTGCTTCCTGGACTATAATGATTTCGGTGTTTGCTAATGCAGGACGGATTGTTGAAGCTCGAGAGCTCTTTGATGACATGCCTCTGAGGGATGTTCAGGCTTGGAATGCGATGATAGTTGGGTATATAGAAAATGGGTGTGTTGAACTTGCAGAGGGGTTGTTTCAGAAGATGCCTGAGCGGGATTTTGAATCTTGGACTCAAATGGTAGATGGGTTGGTCGAGGCCCAAAGAGTTAATGATGCCTTGAAGCTATTCATGGAGATGCCAGAGAAATGTCCCAAAACATGGAACTCGATCCTTTTGAAATTAATAAGAAATGAGCTCACTAGAGAAGCTCATGCTTGTCTTGAGAAGACGCCTTACAGAGATGTCATATCATGGACAAATTTGATTGTTGGATATTTTGGAATCAGAGAGGTTGGCGTCGCAATTAAACTTTTTGAGTCCATGCCTACTCGAGATACAACTGCATGGAATGCCACGATATTTGGATTAAATGAAAACGATCGTGGTGAAGAAGGTTTGAAGCTTTTCATGAGAATGAAAGAATCAGGGCCATCACCAGACAAAGCTACATTTACTAGTGTTTTGACAATCTGTTCAGACTTACCAACCTTACACCTAGGTAGACAAACTCATGCACATATAGTAAAAGCAGGATTTGGTGACATTGTTTCAGTTTCCAATGCTATGGTTACCATGTATGCAAGATGTGGGAACATGGATTCTGCTTTACTGGAATTCTCGTCCATGCCTAGCCGTGATGTCATCTCTTGGAATTCTATAATATGTGGATATGCACATCATGGGAATGGTGATGTAGCTTTGGAGATGTTCGAACGCATGAGATCAGCAGATGTTCATCCAAATCCTATAACATTTGTCAATGTTCTATCCGCTTGTAGCCATTCAGGGTTGGTCAGTCAAGGTAAATACTACTTTGACATGATGAGATACACGTATTTTCTTCAACCTACAACTGAGCATTATACATGTATAGTTGATTTATTCGGTAGATTTGGGCTTATAGATGAGGCAATGAGTTTTCTAGATCAAATGAAAGCAGATGGATTTGAAATTCCTGCTAGTGTATGGGGGGCATTACTTGGAGCATGTAGAATCCACAAGAAAATTGAGGTGGGTGAGATTGCTGGAGAGAGGGTTCTGGAAATAGAGCCTGGCAACTCCGGTGTATATTTGATTTTGGCAGAAATGTATTTGAGTAATGGAAGAAGAGAAGATGCTGGGCGGATTAAGGCAAGGATGAAAGAGAAAGGAGTCAAGAAGCAACCGGGGTGCAGTTGGATCGAGGTAAACAACATTGGGAATGTATTTCTTTCAGGGGACAAATCCCACCCCAAATTTAGGAAGATCTGTTATGTGTTAGAATTACTGTATATAGAGATTGAGACTCAGTTTCCAAAACCTGCTGCATTGCTTCAACAAGTACAAGTTCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006820 GO:0008028 GO:0008150 GO:0008509 GO:0008514 GO:0008643 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0015075 GO:0015120 GO:0015144 GO:0015318 GO:0015605 GO:0015711 GO:0015713 GO:0015717 GO:0015718 GO:0015748 GO:0015849 GO:0022857 GO:0031967 GO:0031975 GO:0034219 GO:0034220 GO:0035436 GO:0042873 GO:0042879 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071917 GO:0098656 GO:1901264 GO:1901505 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

680

Amino Acids

76.76

Weight (kDa)

6.08

Isoelectric Point (pI)

31.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	68 - 99	8.5e-08	PPR repeat family
PPR_1	PF12854	68 - 97	1.9e-06	PPR repeat
PPR	PF01535	71 - 100	1.8e-08	PPR repeat
PPR_2	PF13041	130 - 160	2.4e-06	PPR repeat family
PPR	PF01535	133 - 162	1.3e-06	PPR repeat
PPR	PF01535	227 - 255	9.7e-06	PPR repeat
PPR_2	PF13041	348 - 394	3.8e-07	PPR repeat family
PPR_2	PF13041	448 - 496	3.1e-10	PPR repeat family
PPR_3	PF13812	449 - 495	4.6e-06	Pentatricopeptide repeat domain
PPR	PF01535	451 - 480	4.4e-07	PPR repeat
E_motif	PF20431	569 - 631	2.9e-18	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002797)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17630
fragaria_vesca	FvH4_7g07680
malus_domestica	MD02G1233400.v1.1 MD04G1135700.v1.1 MD04G1135800.v1.1 MD07G1080200.v1.1
prunus_persica	Prupe.2G104200_v2.0.a1
pyrus_communis	pycom02g20160 pycom07g06380 pycom12g15330
rosa_chinensis	RchiOBHm_Chr1g0342641 RchiOBHm_Chr2g0089941 RchiOBHm_Chr2g0137951 RchiOBHm_Chr5g0045131 RchiOBHm_Chr5g0045141
rosa_laevigata	RLG00000009883 RLG00000029167 RLG00000029185
rosa_multiflora	Rmu_sc0000539.1_g000061 Rmu_sc0005365.1_g000006 Rmu_sc0007318.1_g000001 Rmu_ssc0000177.1_g000005
rosa_roxburghii	Rroxscaffold_4G00313140 Rroxscaffold_6G00402970
rosa_rugosa	Rorug01G0146900.1 Rorug04G0068400 Rorug04G0068500 Rorug04G0068600 Rorug07G0164400 Rorug07G0164400
rosa_samantha	Rh1AG165200 Rh1AG191600 Rh1BG131300 Rh1CG153800 Rh1DG166400 Rh2BG401800 Rh5BG310600 Rh5DG321000
rosa_wichuraiana	Rw1G013710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	466
Acc16I	TGCGCA	1 cut(s)	152
Acc36I	ACCTGC	2 cut(s)	466, 2017
AccB7I	CCANNNNNTGG	1 cut(s)	867
AccBSI	CCGCTC	2 cut(s)	295, 760
AccI	GTMKAC	2 cut(s)	43, 1210
AciI	CCGC	5 cut(s)	266, 295, 760, 1479, 1831
AclWI	GGATC	2 cut(s)	871, 1895
AcsI	RAATTY	7 cut(s)	406, 499, 967, 1322, 1360, 1659, 1943
AcuI	CTGAAG	1 cut(s)	53
AcyI	GRCGYC	2 cut(s)	938, 1005
AfaI	GTAC	3 cut(s)	79, 239, 2031
AfiI	CCNNNNNNNGG	4 cut(s)	216, 265, 867, 1947
AflIII	ACRYGT	2 cut(s)	1539, 1574
AhlI	ACTAGT	1 cut(s)	1163
AjnI	CCWGG	3 cut(s)	215, 587, 1759
AloI	GAACNNNNNNTCC	2 cut(s)	1728, 1760
Alw21I	GWGCWC	2 cut(s)	648, 906
Alw26I	GTCTC	2 cut(s)	384, 1985
AlwI	GGATC	2 cut(s)	871, 1895
AlwNI	CAGNNNCTG	1 cut(s)	181
Ama87I	CYCGRG	2 cut(s)	639, 1038
AoxI	GGCC	2 cut(s)	804, 1136
ApeKI	GCWGC	3 cut(s)	83, 86, 2012
ApoI	RAATTY	7 cut(s)	406, 499, 967, 1322, 1360, 1659, 1943
AseI	ATTAAT	1 cut(s)	890
Asp700I	GAANNNNTTC	3 cut(s)	182, 833, 1112
AspA2I	CCTAGG	1 cut(s)	1204
AspLEI	GCGC	1 cut(s)	153
AspS9I	GGNCC	2 cut(s)	805, 1136
AsuC2I	CCSGG	3 cut(s)	328, 421, 1875
AsuHPI	GGTGA	8 cut(s)	205, 331, 490, 1106, 1134, 1259, 1409, 1736
AsuII	TTCGAA	1 cut(s)	1419
AvaI	CYCGRG	2 cut(s)	639, 1038
AvrII	CCTAGG	1 cut(s)	1204
BanII	GRGCYC	2 cut(s)	648, 906
BarI	GAAGNNNNNNTAC	2 cut(s)	926, 958
BbsI	GAAGAC	3 cut(s)	295, 361, 941
Bbv12I	GWGCWC	2 cut(s)	648, 906
BbvCI	CCTCAGC	1 cut(s)	546
BbvI	GCAGC	3 cut(s)	73, 95, 1999
BccI	CCATC	5 cut(s)	373, 461, 785, 1147, 1643
BceAI	ACGGC	1 cut(s)	1326
BcgI	CGANNNNNNTGC	2 cut(s)	1870, 1904
BciT130I	CCWGG	3 cut(s)	217, 589, 1761
BcnI	CCSGG	3 cut(s)	328, 421, 1875
BcoDI	GTCTC	2 cut(s)	384, 1985
BcuI	ACTAGT	1 cut(s)	1163
BfaI	CTAG	7 cut(s)	360, 909, 1164, 1205, 1338, 1631, 1668
BfmI	CTRYAG	1 cut(s)	81
BfuAI	ACCTGC	2 cut(s)	466, 2017
BglII	AGATCT	1 cut(s)	1953
BisI	GCNGC	3 cut(s)	84, 87, 2013
BlnI	CCTAGG	1 cut(s)	1204
BlsI	GCNGC	3 cut(s)	85, 88, 2014
Bme1390I	CCNGG	6 cut(s)	217, 328, 421, 589, 1761, 1875
BmeT110I	CYCGRG	2 cut(s)	639, 1038
BmgT120I	GGNCC	2 cut(s)	805, 1136
BmrFI	CCNGG	6 cut(s)	217, 328, 421, 589, 1761, 1875
BmsI	GCATC	7 cut(s)	253, 324, 462, 741, 811, 834, 1813
BpiI	GAAGAC	3 cut(s)	295, 361, 941
BpmI	CTGGAG	1 cut(s)	1755
Bpu10I	CCTNAGC	2 cut(s)	546, 756
Bpu14I	TTCGAA	1 cut(s)	1419
BpuEI	CTTGAG	1 cut(s)	950
BpuMI	CCSGG	3 cut(s)	328, 421, 1875
BsaAI	YACGTR	1 cut(s)	1542
BsaBI	GATNNNNATC	1 cut(s)	1443
BsaHI	GRCGYC	2 cut(s)	938, 1005
BsaJI	CCNNGG	2 cut(s)	1204, 1874
BsaWI	WCCGGW	1 cut(s)	1769
BsaXI	ACNNNNNCTCC	2 cut(s)	1728, 1758
Bsc4I	CCNNNNNNNGG	4 cut(s)	216, 265, 867, 1947
Bse1I	ACTGG	1 cut(s)	1323
Bse3DI	GCAATG	4 cut(s)	160, 344, 1626, 2015
Bse8I	GATNNNNATC	1 cut(s)	1443
BseBI	CCWGG	3 cut(s)	217, 589, 1761
BseDI	CCNNGG	2 cut(s)	1204, 1874
BseGI	GGATG	9 cut(s)	291, 304, 352, 384, 477, 490, 676, 1444, 1851
BseJI	GATNNNNATC	1 cut(s)	1443
BseLI	CCNNNNNNNGG	4 cut(s)	216, 265, 867, 1947
BseMI	GCAATG	4 cut(s)	160, 344, 1626, 2015
BseMII	CTCAG	6 cut(s)	282, 537, 656, 747, 1554, 2009
BseNI	ACTGG	1 cut(s)	1323
BseRI	GAGGAG	2 cut(s)	38, 563
BseXI	GCAGC	3 cut(s)	73, 95, 1999
BseYI	CCCAGC	1 cut(s)	1826
BsgI	GTGCAG	1 cut(s)	1900
Bsh1285I	CGRYCG	1 cut(s)	1090
BshFI	GGCC	2 cut(s)	806, 1138
BsiEI	CGRYCG	1 cut(s)	1090
BsiHKAI	GWGCWC	2 cut(s)	648, 906
BsiHKCI	CYCGRG	2 cut(s)	639, 1038
BsiSI	CCGG	4 cut(s)	327, 420, 1770, 1874
BslFI	GGGAC	3 cut(s)	528, 843, 1940
BslI	CCNNNNNNNGG	4 cut(s)	216, 265, 867, 1947
BsmAI	GTCTC	2 cut(s)	384, 1985
BsmBI	CGTCTC	1 cut(s)	384
BsmFI	GGGAC	3 cut(s)	528, 843, 1940
BsmI	GAATGC	3 cut(s)	570, 691, 1063
BsnI	GGCC	2 cut(s)	806, 1138
BsoBI	CYCGRG	2 cut(s)	639, 1038
Bsp119I	TTCGAA	1 cut(s)	1419
Bsp1286I	GDGCHC	2 cut(s)	648, 906
Bsp143I	GATC	6 cut(s)	876, 1087, 1430, 1633, 1887, 1953
BspACI	CCGC	5 cut(s)	266, 295, 760, 1479, 1831
BspANI	GGCC	2 cut(s)	806, 1138
BspCNI	CTCAG	6 cut(s)	283, 538, 657, 748, 1555, 2008
BspHI	TCATGA	1 cut(s)	1116
BspMAI	CTGCAG	1 cut(s)	85
BspMI	ACCTGC	2 cut(s)	466, 2017
BspPI	GGATC	2 cut(s)	871, 1895
BspT104I	TTCGAA	1 cut(s)	1419
BsrBI	CCGCTC	2 cut(s)	295, 760
BsrDI	GCAATG	4 cut(s)	160, 344, 1626, 2015
BsrI	ACTGG	1 cut(s)	1323
BssECI	CCNNGG	2 cut(s)	1204, 1874
BssMI	GATC	6 cut(s)	876, 1087, 1430, 1633, 1887, 1953
BssNI	GRCGYC	2 cut(s)	938, 1005
BssT1I	CCWWGG	1 cut(s)	1204
Bst2UI	CCWGG	3 cut(s)	217, 589, 1761
Bst4CI	ACNGT	3 cut(s)	211, 319, 1977
Bst6I	CTCTTC	1 cut(s)	1810
BstACI	GRCGYC	2 cut(s)	938, 1005
BstAPI	GCANNNNNTGC	1 cut(s)	1058
BstBAI	YACGTR	1 cut(s)	1542
BstBI	TTCGAA	1 cut(s)	1419
BstDEI	CTNAG	9 cut(s)	27, 38, 56, 291, 546, 665, 756, 1563, 1995
BstEII	GGTNACC	1 cut(s)	1276
BstF5I	GGATG	9 cut(s)	291, 304, 352, 384, 477, 490, 676, 1444, 1851
BstHHI	GCGC	1 cut(s)	153
BstKTI	GATC	6 cut(s)	879, 1090, 1433, 1636, 1890, 1956
BstMAI	GTCTC	2 cut(s)	384, 1985
BstMBI	GATC	6 cut(s)	876, 1087, 1430, 1633, 1887, 1953
BstMCI	CGRYCG	1 cut(s)	1090
BstMWI	GCNNNNNNNGC	2 cut(s)	686, 1058
BstNI	CCWGG	3 cut(s)	217, 589, 1761
BstNSI	RCATGY	4 cut(s)	151, 661, 1578, 1698
BstPI	GGTNACC	1 cut(s)	1276
BstSCI	CCNGG	6 cut(s)	215, 326, 419, 587, 1759, 1873
BstSFI	CTRYAG	1 cut(s)	81
BstV1I	GCAGC	3 cut(s)	73, 95, 1999
BstV2I	GAAGAC	3 cut(s)	295, 361, 941
BstX2I	RGATCY	1 cut(s)	1953
BstXI	CCANNNNNNTGG	1 cut(s)	1273
BstYI	RGATCY	1 cut(s)	1953
BsuRI	GGCC	2 cut(s)	806, 1138
BtgZI	GCGATG	1 cut(s)	704
BtsCI	GGATG	9 cut(s)	291, 304, 352, 384, 477, 490, 676, 1444, 1851
BveI	ACCTGC	2 cut(s)	466, 2017
CaiI	CAGNNNCTG	1 cut(s)	181
CciI	TCATGA	1 cut(s)	1116
CfoI	GCGC	1 cut(s)	153
Cfr13I	GGNCC	2 cut(s)	805, 1136
CseI	GACGC	2 cut(s)	946, 994
Csp6I	GTAC	3 cut(s)	78, 238, 2030
CspCI	CAANNNNNGTGG	2 cut(s)	1051, 1086
CviQI	GTAC	3 cut(s)	78, 238, 2030
DdeI	CTNAG	9 cut(s)	27, 38, 56, 291, 546, 665, 756, 1563, 1995
DpnI	GATC	6 cut(s)	878, 1089, 1432, 1635, 1889, 1955
DpnII	GATC	6 cut(s)	876, 1087, 1430, 1633, 1887, 1953
Eam1104I	CTCTTC	1 cut(s)	1810
EarI	CTCTTC	1 cut(s)	1810
EciI	GGCGGA	1 cut(s)	1846
Ecl136II	GAGCTC	2 cut(s)	646, 904
Eco130I	CCWWGG	1 cut(s)	1204
Eco24I	GRGCYC	2 cut(s)	648, 906
Eco53kI	GAGCTC	2 cut(s)	646, 904
Eco57I	CTGAAG	1 cut(s)	53
Eco88I	CYCGRG	2 cut(s)	639, 1038
Eco91I	GGTNACC	1 cut(s)	1276
EcoICRI	GAGCTC	2 cut(s)	646, 904
EcoO65I	GGTNACC	1 cut(s)	1276
EcoRI	GAATTC	3 cut(s)	406, 1322, 1360
EcoRII	CCWGG	3 cut(s)	215, 587, 1759
EcoT14I	CCWWGG	1 cut(s)	1204
EcoT38I	GRGCYC	2 cut(s)	648, 906
ErhI	CCWWGG	1 cut(s)	1204
Esp3I	CGTCTC	1 cut(s)	384
FaqI	GGGAC	3 cut(s)	528, 843, 1940
FauI	CCCGC	2 cut(s)	288, 753
FblI	GTMKAC	2 cut(s)	43, 1210
Fnu4HI	GCNGC	3 cut(s)	84, 87, 2013
FokI	GGATG	9 cut(s)	298, 311, 359, 391, 484, 497, 683, 1431, 1858
FriOI	GRGCYC	2 cut(s)	648, 906
Fsp4HI	GCNGC	3 cut(s)	84, 87, 2013
FspBI	CTAG	7 cut(s)	360, 909, 1164, 1205, 1338, 1631, 1668
FspI	TGCGCA	1 cut(s)	152
GlaI	GCGC	1 cut(s)	152
GluI	GCNGC	3 cut(s)	84, 87, 2013
GsaI	CCCAGC	1 cut(s)	1830
GsuI	CTGGAG	1 cut(s)	1755
HaeIII	GGCC	2 cut(s)	806, 1138
HapII	CCGG	4 cut(s)	327, 420, 1770, 1874
HgaI	GACGC	2 cut(s)	946, 994
HhaI	GCGC	1 cut(s)	153
Hin1I	GRCGYC	2 cut(s)	938, 1005
Hin6I	GCGC	1 cut(s)	151
HinP1I	GCGC	1 cut(s)	151
HincII	GTYRAC	1 cut(s)	44
HindII	GTYRAC	1 cut(s)	44
HindIII	AAGCTT	2 cut(s)	35, 1109
HpaII	CCGG	4 cut(s)	327, 420, 1770, 1874
HphI	GGTGA	8 cut(s)	205, 331, 490, 1106, 1134, 1259, 1409, 1736
Hpy166II	GTNNAC	4 cut(s)	44, 78, 1211, 1897
Hpy188I	TCNGA	6 cut(s)	285, 389, 666, 747, 995, 1186
Hpy188III	TCNNGA	8 cut(s)	575, 641, 929, 1040, 1117, 1631, 1748, 1864
Hpy8I	GTNNAC	4 cut(s)	44, 78, 1211, 1897
Hpy99I	CGWCG	3 cut(s)	191, 377, 1010
HpyAV	CCTTC	2 cut(s)	475, 1094
HpyCH4III	ACNGT	3 cut(s)	211, 319, 1977
HpyCH4IV	ACGT	2 cut(s)	393, 1541
HpyF10VI	GCNNNNNNNGC	2 cut(s)	686, 1058
HpyF3I	CTNAG	9 cut(s)	27, 38, 56, 291, 546, 665, 756, 1563, 1995
HpySE526I	ACGT	2 cut(s)	393, 1541
Hsp92I	GRCGYC	2 cut(s)	938, 1005
HspAI	GCGC	1 cut(s)	151
Kzo9I	GATC	6 cut(s)	876, 1087, 1430, 1633, 1887, 1953
LmnI	GCTCC	3 cut(s)	23, 449, 1691
Lsp1109I	GCAGC	3 cut(s)	73, 95, 1999
LweI	GCATC	7 cut(s)	253, 324, 462, 741, 811, 834, 1813
MaeI	CTAG	7 cut(s)	360, 909, 1164, 1205, 1338, 1631, 1668
MaeII	ACGT	2 cut(s)	393, 1541
MaeIII	GTNAC	4 cut(s)	211, 397, 1247, 1276
MalI	GATC	6 cut(s)	878, 1089, 1432, 1635, 1889, 1955
MbiI	CCGCTC	2 cut(s)	295, 760
MboI	GATC	6 cut(s)	876, 1087, 1430, 1633, 1887, 1953
MflI	RGATCY	1 cut(s)	1953
MhlI	GDGCHC	2 cut(s)	648, 906
MlyI	GAGTC	6 cut(s)	39, 375, 772, 1034, 1869, 1987
MmeI	TCCRAC	2 cut(s)	958, 1865
MroXI	GAANNNNTTC	3 cut(s)	182, 833, 1112
MseI	TTAA	7 cut(s)	279, 558, 816, 890, 1014, 1076, 1836
MslI	CAYNNNNRTG	3 cut(s)	842, 1121, 1392
MspA1I	CMGCKG	1 cut(s)	86
MspI	CCGG	4 cut(s)	327, 420, 1770, 1874
MspR9I	CCNGG	6 cut(s)	217, 328, 421, 589, 1761, 1875
Mva1269I	GAATGC	3 cut(s)	570, 691, 1063
MvaI	CCWGG	3 cut(s)	217, 589, 1761
MwoI	GCNNNNNNNGC	2 cut(s)	686, 1058
NciI	CCSGG	3 cut(s)	328, 421, 1875
NdeII	GATC	6 cut(s)	876, 1087, 1430, 1633, 1887, 1953
NmuCI	GTSAC	3 cut(s)	211, 397, 1247
NsbI	TGCGCA	1 cut(s)	152
NspI	RCATGY	4 cut(s)	151, 661, 1578, 1698
NspV	TTCGAA	1 cut(s)	1419
PaeR7I	CTCGAG	2 cut(s)	639, 1038
PagI	TCATGA	1 cut(s)	1116
PaqCI	CACCTGC	1 cut(s)	466
PciI	ACATGT	1 cut(s)	1574
PctI	GAATGC	3 cut(s)	570, 691, 1063
PdmI	GAANNNNTTC	3 cut(s)	182, 833, 1112
PfeI	GAWTC	7 cut(s)	112, 229, 770, 990, 1130, 1307, 1701
PflMI	CCANNNNNTGG	1 cut(s)	867
PfoI	TCCNGGA	1 cut(s)	587
PkrI	GCNGC	3 cut(s)	85, 88, 2014
Ple19I	CGATCG	1 cut(s)	1090
PleI	GAGTC	6 cut(s)	39, 374, 772, 1033, 1868, 1987
PpsI	GAGTC	6 cut(s)	39, 374, 772, 1033, 1868, 1987
Ppu21I	YACGTR	1 cut(s)	1542
PscI	ACATGT	1 cut(s)	1574
PshBI	ATTAAT	1 cut(s)	890
Psp124BI	GAGCTC	2 cut(s)	648, 906
Psp6I	CCWGG	3 cut(s)	215, 587, 1759
PspEI	GGTNACC	1 cut(s)	1276
PspFI	CCCAGC	1 cut(s)	1826
PspGI	CCWGG	3 cut(s)	215, 587, 1759
PspPI	GGNCC	2 cut(s)	805, 1136
PstI	CTGCAG	1 cut(s)	85
PstNI	CAGNNNCTG	1 cut(s)	181
PsuI	RGATCY	1 cut(s)	1953
PvuI	CGATCG	1 cut(s)	1090
PvuII	CAGCTG	1 cut(s)	86
RsaI	GTAC	3 cut(s)	79, 239, 2031
RsaNI	GTAC	3 cut(s)	78, 238, 2030
RseI	CAYNNNNRTG	3 cut(s)	842, 1121, 1392
SacI	GAGCTC	2 cut(s)	648, 906
SalI	GTCGAC	1 cut(s)	42
SaqAI	TTAA	7 cut(s)	279, 558, 816, 890, 1014, 1076, 1836
SatI	GCNGC	3 cut(s)	84, 87, 2013
Sau3AI	GATC	6 cut(s)	876, 1087, 1430, 1633, 1887, 1953
Sau96I	GGNCC	2 cut(s)	805, 1136
SchI	GAGTC	6 cut(s)	39, 375, 772, 1034, 1869, 1987
ScrFI	CCNGG	6 cut(s)	217, 328, 421, 589, 1761, 1875
SduI	GDGCHC	2 cut(s)	648, 906
SfaNI	GCATC	7 cut(s)	253, 324, 462, 741, 811, 834, 1813
SfcI	CTRYAG	1 cut(s)	81
Sfr274I	CTCGAG	2 cut(s)	639, 1038
SfuI	TTCGAA	1 cut(s)	1419
SlaI	CTCGAG	2 cut(s)	639, 1038
SmiMI	CAYNNNNRTG	3 cut(s)	842, 1121, 1392
SmlI	CTYRAG	3 cut(s)	639, 929, 1038
SmoI	CTYRAG	3 cut(s)	639, 929, 1038
SpeI	ACTAGT	1 cut(s)	1163
SsiI	CCGC	5 cut(s)	266, 295, 760, 1479, 1831
SspMI	CTAG	7 cut(s)	360, 909, 1164, 1205, 1338, 1631, 1668
SstI	GAGCTC	2 cut(s)	648, 906
StyD4I	CCNGG	6 cut(s)	215, 326, 419, 587, 1759, 1873
StyI	CCWWGG	1 cut(s)	1204
TaaI	ACNGT	3 cut(s)	211, 319, 1977
TaiI	ACGT	2 cut(s)	396, 1544
TatI	WGTACW	2 cut(s)	77, 2029
TfiI	GAWTC	7 cut(s)	112, 229, 770, 990, 1130, 1307, 1701
Tru1I	TTAA	7 cut(s)	279, 558, 816, 890, 1014, 1076, 1836
Tru9I	TTAA	7 cut(s)	279, 558, 816, 890, 1014, 1076, 1836
TseFI	GTSAC	3 cut(s)	211, 397, 1247
TseI	GCWGC	3 cut(s)	83, 86, 2012
Tsp45I	GTSAC	3 cut(s)	211, 397, 1247
TspDTI	ATGAA	7 cut(s)	826, 1095, 1105, 1139, 1433, 1655, 1862
TspGWI	ACGGA	1 cut(s)	640
Van91I	CCANNNNNTGG	1 cut(s)	867
VspI	ATTAAT	1 cut(s)	890
XapI	RAATTY	7 cut(s)	406, 499, 967, 1322, 1360, 1659, 1943
XbaI	TCTAGA	1 cut(s)	1630
XceI	RCATGY	4 cut(s)	151, 661, 1578, 1698
XhoI	CTCGAG	2 cut(s)	639, 1038
XmaJI	CCTAGG	1 cut(s)	1204
XmiI	GTMKAC	2 cut(s)	43, 1210
XmnI	GAANNNNTTC	3 cut(s)	182, 833, 1112
XspI	CTAG	7 cut(s)	360, 909, 1164, 1205, 1338, 1631, 1668

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.