Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0002797

Physical Location & Seq

Genomic Coordinates Reverse (-)

33936041 .. 33937300

Gene Structure 1260 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029167

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1260 bp

ATGCTTACCCTGAATCTCAACAGTCCTTCCATCACTGTCACTTTCTCCAAATCCACCCATCACTACCCCATCAATGCCTCCCCCTCTTCTCTCCCCAACACAAGATTCCCCACCTCATCTGTTCTGCTCCACACACCCACCAAACCTTTCACCAGAATCTATGCCCACCCATTTGGATTCTCTTCAAAACCCACTTCCCAGATCCATGGTTTGAACCCAAAGTTCCCATCTTTCTTCTCCTCCTCCAAACCCAGATCCCAAACCCCAAAAGCTTCTTCTGCATCAGAAGCCAACCCCAATGGAGGTATTGAACCCACAGTTCCAAAGCCTAAAGTCACAACCGCCCAGCTTGCCCTGATCTTCGGGCTCTGGTACTTCCAGAACATTGTCTTCAATATCTACAACAAGAAGGCATTGAATGTTTTTCCATTCCCATGGCTTCTGGCGTCGTTTCAGCTCTTTGCCGGGTCCGTCTGGATGTTGATCCTCTGGTCTCTGAAACTCCAGCCATGCCCGAAAATCTCGAAACCGTTCATTGTTGCTCTCCTTGGCCCTGCATTGTTCCACACCATAGGCCACATCTCGGCCTGCGTCTCATTCTCTAAGGTGGCTGTGTCCTTCACCCATGTCATCAAGTCTGCGGAGCCTGTCTTTTCTGTGGTGTTTTCGTCGTTCCTAGGGGAGACTTACCCTATACAGGTCTGGCTTTCGATTCTTCCTATTGTTATGGGTTGTTCTCTAGCTGCCGTTACTGAGGTGACATTCAATTTGCAAGGCCTGTGGGGCGCTTTGATTAGCAATGTGGGGTTTGTGTTGAGGAACATTTATTCGAAACGGAGCTTGCAGAGCTTTAAAGAAATAGATGGGTTGAATTTGTATGGTTGCATCAGTATAATTTCGCTGTTTTATTTGTTTCCTGTGGCGGTTTTGGTTGAAGGGTCGCAATGGGTTCAAGGGTATCATAGAGCTATAGCATCTGTGGGGGAACCATCCACATTTTACTTTTGGGTGTTGTTGTCTGGAGTGTTTTACCATCTGTATAACCAGTCGAGTTATCAGGCTCTTGATGAGATTAGCCCTCTGACATTCTCAGTTGGAAACACAATGAAGAGGGTGGTGGTGATTGTGTCTACTGTGTTGGTGTTCAGAAATCCAGTTAGACCTCTTAATGCACTTGGGTCCGCTGTGGCGATATTTGGGACATTCTTGTATTCTCAGGCAACAGCTAAGAAGAAAAAGGAAGCTGAAAAGAAGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006820 GO:0008028 GO:0008150 GO:0008509 GO:0008514 GO:0008643 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0015075 GO:0015120 GO:0015144 GO:0015318 GO:0015605 GO:0015711 GO:0015713 GO:0015717 GO:0015718 GO:0015748 GO:0015849 GO:0022857 GO:0031967 GO:0031975 GO:0034219 GO:0034220 GO:0035436 GO:0042873 GO:0042879 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071917 GO:0098656 GO:1901264 GO:1901505 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

420

Amino Acids

46.24

Weight (kDa)

9.84

Isoelectric Point (pI)

49.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPT	PF03151	116 - 405	3.3e-115	Triose-phosphate Transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002797)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17630
fragaria_vesca	FvH4_7g07680
malus_domestica	MD02G1233400.v1.1 MD04G1135700.v1.1 MD04G1135800.v1.1 MD07G1080200.v1.1
prunus_persica	Prupe.2G104200_v2.0.a1
pyrus_communis	pycom02g20160 pycom07g06380 pycom12g15330
rosa_chinensis	RchiOBHm_Chr1g0342641 RchiOBHm_Chr2g0089941 RchiOBHm_Chr2g0137951 RchiOBHm_Chr5g0045131 RchiOBHm_Chr5g0045141
rosa_laevigata	RLG00000009883 RLG00000029167 RLG00000029185
rosa_multiflora	Rmu_sc0000539.1_g000061 Rmu_sc0005365.1_g000006 Rmu_sc0007318.1_g000001 Rmu_ssc0000177.1_g000005
rosa_roxburghii	Rroxscaffold_4G00313140 Rroxscaffold_6G00402970
rosa_rugosa	Rorug01G0146900.1 Rorug04G0068400 Rorug04G0068500 Rorug04G0068600 Rorug07G0164400 Rorug07G0164400
rosa_samantha	Rh1AG165200 Rh1AG191600 Rh1BG131300 Rh1CG153800 Rh1DG166400 Rh2BG401800 Rh5BG310600 Rh5DG321000
rosa_wichuraiana	Rw1G013710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	1130
AciI	CCGC	4 cut(s)	342, 641, 923, 1182
AclWI	GGATC	3 cut(s)	196, 249, 478
AcsI	RAATTY	1 cut(s)	871
AcyI	GRCGYC	1 cut(s)	446
AfaI	GTAC	1 cut(s)	374
AfiI	CCNNNNNNNGG	3 cut(s)	302, 583, 697
AgsI	TTSAA	9 cut(s)	186, 214, 311, 394, 418, 766, 871, 935, 953
AjuI	GAANNNNNNNTTGG	4 cut(s)	89, 121, 259, 291
AluBI	AGCT	9 cut(s)	272, 349, 457, 743, 840, 849, 968, 1226, 1244
AluI	AGCT	9 cut(s)	272, 349, 457, 743, 840, 849, 968, 1226, 1244
Alw26I	GTCTC	3 cut(s)	498, 598, 677
AlwI	GGATC	3 cut(s)	196, 249, 478
AoxI	GGCC	4 cut(s)	550, 574, 585, 775
ApeKI	GCWGC	1 cut(s)	743
ApoI	RAATTY	1 cut(s)	871
ArsI	GACNNNNNNTTYG	2 cut(s)	751, 783
Asp700I	GAANNNNTTC	1 cut(s)	530
AspA2I	CCTAGG	1 cut(s)	676
AspLEI	GCGC	1 cut(s)	788
AspS9I	GGNCC	3 cut(s)	468, 551, 1179
AsuC2I	CCSGG	1 cut(s)	466
AsuHPI	GGTGA	4 cut(s)	142, 613, 769, 1132
AsuII	TTCGAA	1 cut(s)	830
AvaII	GGWCC	2 cut(s)	468, 1179
AvrII	CCTAGG	1 cut(s)	676
BanII	GRGCYC	1 cut(s)	369
BbsI	GAAGAC	1 cut(s)	382
BbvI	GCAGC	1 cut(s)	730
BccI	CCATC	7 cut(s)	38, 66, 77, 235, 857, 997, 1041
BceAI	ACGGC	1 cut(s)	731
BcnI	CCSGG	1 cut(s)	466
BcoDI	GTCTC	3 cut(s)	498, 598, 677
BfaI	CTAG	2 cut(s)	677, 740
BfmI	CTRYAG	1 cut(s)	969
BfoI	RGCGCY	1 cut(s)	789
BglI	GCCNNNNNGGC	1 cut(s)	783
BisI	GCNGC	1 cut(s)	744
BlnI	CCTAGG	1 cut(s)	676
BlsI	GCNGC	1 cut(s)	745
Bme1390I	CCNGG	1 cut(s)	466
Bme18I	GGWCC	2 cut(s)	468, 1179
BmgT120I	GGNCC	3 cut(s)	468, 551, 1179
BmiI	GGNNCC	4 cut(s)	469, 645, 987, 1180
BmrFI	CCNGG	1 cut(s)	466
BmsI	GCATC	3 cut(s)	290, 894, 983
BpiI	GAAGAC	1 cut(s)	382
BpmI	CTGGAG	2 cut(s)	488, 1041
Bpu14I	TTCGAA	1 cut(s)	830
BpuMI	CCSGG	1 cut(s)	466
BsaBI	GATNNNNATC	1 cut(s)	482
BsaHI	GRCGYC	1 cut(s)	446
BsaI	GGTCTC	1 cut(s)	498
BsaJI	CCNNGG	4 cut(s)	205, 434, 547, 676
Bsc4I	CCNNNNNNNGG	3 cut(s)	302, 583, 697
Bse1I	ACTGG	2 cut(s)	1045, 1154
Bse3DI	GCAATG	2 cut(s)	805, 950
Bse8I	GATNNNNATC	1 cut(s)	482
BseDI	CCNNGG	4 cut(s)	205, 434, 547, 676
BseGI	GGATG	2 cut(s)	483, 989
BseJI	GATNNNNATC	1 cut(s)	482
BseLI	CCNNNNNNNGG	3 cut(s)	302, 583, 697
BseMI	GCAATG	2 cut(s)	805, 950
BseMII	CTCAG	3 cut(s)	744, 1104, 1229
BseNI	ACTGG	2 cut(s)	1045, 1154
BseRI	GAGGAG	2 cut(s)	229, 232
BseXI	GCAGC	1 cut(s)	730
BseYI	CCCAGC	1 cut(s)	345
BshFI	GGCC	4 cut(s)	552, 576, 587, 777
BsiSI	CCGG	1 cut(s)	465
BslFI	GGGAC	1 cut(s)	1213
BslI	CCNNNNNNNGG	3 cut(s)	302, 583, 697
BsmAI	GTCTC	3 cut(s)	498, 598, 677
BsmBI	CGTCTC	1 cut(s)	598
BsmFI	GGGAC	1 cut(s)	1213
BsnI	GGCC	4 cut(s)	552, 576, 587, 777
Bso31I	GGTCTC	1 cut(s)	498
Bsp119I	TTCGAA	1 cut(s)	830
Bsp1286I	GDGCHC	1 cut(s)	369
Bsp143I	GATC	4 cut(s)	201, 254, 357, 483
Bsp19I	CCATGG	2 cut(s)	205, 434
BspACI	CCGC	4 cut(s)	342, 641, 923, 1182
BspANI	GGCC	4 cut(s)	552, 576, 587, 777
BspCNI	CTCAG	3 cut(s)	745, 1103, 1228
BspLI	GGNNCC	4 cut(s)	469, 645, 987, 1180
BspPI	GGATC	3 cut(s)	196, 249, 478
BspT104I	TTCGAA	1 cut(s)	830
BspTNI	GGTCTC	1 cut(s)	498
BsrDI	GCAATG	2 cut(s)	805, 950
BsrI	ACTGG	2 cut(s)	1045, 1154
BssECI	CCNNGG	4 cut(s)	205, 434, 547, 676
BssMI	GATC	4 cut(s)	201, 254, 357, 483
BssNI	GRCGYC	1 cut(s)	446
BssT1I	CCWWGG	4 cut(s)	205, 434, 547, 676
Bst4CI	ACNGT	5 cut(s)	23, 37, 319, 531, 1135
Bst6I	CTCTTC	3 cut(s)	91, 187, 1103
BstACI	GRCGYC	1 cut(s)	446
BstBI	TTCGAA	1 cut(s)	830
BstC8I	GCNNGC	3 cut(s)	351, 589, 842
BstDEI	CTNAG	5 cut(s)	603, 753, 1090, 1215, 1227
BstDSI	CCRYGG	2 cut(s)	205, 434
BstF5I	GGATG	2 cut(s)	483, 989
BstH2I	RGCGCY	1 cut(s)	789
BstHHI	GCGC	1 cut(s)	788
BstKTI	GATC	4 cut(s)	204, 257, 360, 486
BstMAI	GTCTC	3 cut(s)	498, 598, 677
BstMBI	GATC	4 cut(s)	201, 254, 357, 483
BstMWI	GCNNNNNNNGC	5 cut(s)	278, 287, 350, 783, 846
BstSCI	CCNGG	1 cut(s)	464
BstSFI	CTRYAG	1 cut(s)	969
BstV1I	GCAGC	1 cut(s)	730
BstV2I	GAAGAC	1 cut(s)	382
BstX2I	RGATCY	2 cut(s)	201, 254
BstXI	CCANNNNNNTGG	3 cut(s)	173, 206, 435
BstYI	RGATCY	2 cut(s)	201, 254
BsuRI	GGCC	4 cut(s)	552, 576, 587, 777
BtgI	CCRYGG	2 cut(s)	205, 434
BtsCI	GGATG	2 cut(s)	483, 989
BtsIMutI	CAGTG	1 cut(s)	33
Cac8I	GCNNGC	3 cut(s)	351, 589, 842
CfoI	GCGC	1 cut(s)	788
Cfr13I	GGNCC	3 cut(s)	468, 551, 1179
CseI	GACGC	2 cut(s)	435, 580
Csp6I	GTAC	1 cut(s)	373
CspCI	CAANNNNNGTGG	2 cut(s)	761, 796
CviAII	CATG	4 cut(s)	206, 435, 510, 626
CviQI	GTAC	1 cut(s)	373
DdeI	CTNAG	5 cut(s)	603, 753, 1090, 1215, 1227
DpnI	GATC	4 cut(s)	203, 256, 359, 485
DpnII	GATC	4 cut(s)	201, 254, 357, 483
DraI	TTTAAA	1 cut(s)	853
Eam1104I	CTCTTC	3 cut(s)	91, 187, 1103
EarI	CTCTTC	3 cut(s)	91, 187, 1103
Eco130I	CCWWGG	4 cut(s)	205, 434, 547, 676
Eco147I	AGGCCT	1 cut(s)	777
Eco24I	GRGCYC	1 cut(s)	369
Eco31I	GGTCTC	1 cut(s)	498
Eco47I	GGWCC	2 cut(s)	468, 1179
EcoT14I	CCWWGG	4 cut(s)	205, 434, 547, 676
EcoT38I	GRGCYC	1 cut(s)	369
ErhI	CCWWGG	4 cut(s)	205, 434, 547, 676
Esp3I	CGTCTC	1 cut(s)	598
FaeI	CATG	4 cut(s)	209, 438, 513, 629
FaqI	GGGAC	1 cut(s)	1213
FatI	CATG	4 cut(s)	205, 434, 509, 625
FblI	GTMKAC	1 cut(s)	1130
Fnu4HI	GCNGC	1 cut(s)	744
FokI	GGATG	2 cut(s)	490, 976
FriOI	GRGCYC	1 cut(s)	369
Fsp4HI	GCNGC	1 cut(s)	744
FspBI	CTAG	2 cut(s)	677, 740
GlaI	GCGC	1 cut(s)	787
GluI	GCNGC	1 cut(s)	744
GsaI	CCCAGC	1 cut(s)	349
GsuI	CTGGAG	2 cut(s)	488, 1041
HaeII	RGCGCY	1 cut(s)	789
HaeIII	GGCC	4 cut(s)	552, 576, 587, 777
HapII	CCGG	1 cut(s)	465
HgaI	GACGC	2 cut(s)	435, 580
HhaI	GCGC	1 cut(s)	788
Hin1I	GRCGYC	1 cut(s)	446
Hin1II	CATG	4 cut(s)	209, 438, 513, 629
Hin6I	GCGC	1 cut(s)	786
HinP1I	GCGC	1 cut(s)	786
HindIII	AAGCTT	1 cut(s)	270
HinfI	GANTC	5 cut(s)	13, 105, 156, 177, 712
HpaII	CCGG	1 cut(s)	465
HphI	GGTGA	4 cut(s)	142, 613, 769, 1132
Hpy166II	GTNNAC	1 cut(s)	1131
Hpy188I	TCNGA	4 cut(s)	286, 498, 1083, 1148
Hpy188III	TCNNGA	5 cut(s)	379, 475, 523, 1020, 1064
Hpy8I	GTNNAC	1 cut(s)	1131
Hpy99I	CGWCG	2 cut(s)	451, 673
HpyAV	CCTTC	4 cut(s)	36, 403, 628, 929
HpyCH4III	ACNGT	5 cut(s)	23, 37, 319, 531, 1135
HpyCH4V	TGCA	6 cut(s)	281, 557, 772, 844, 885, 1172
HpyF10VI	GCNNNNNNNGC	5 cut(s)	278, 287, 350, 783, 846
HpyF3I	CTNAG	5 cut(s)	603, 753, 1090, 1215, 1227
Hsp92I	GRCGYC	1 cut(s)	446
Hsp92II	CATG	4 cut(s)	209, 438, 513, 629
HspAI	GCGC	1 cut(s)	786
Kzo9I	GATC	4 cut(s)	201, 254, 357, 483
LmnI	GCTCC	3 cut(s)	132, 643, 837
Lsp1109I	GCAGC	1 cut(s)	730
LweI	GCATC	3 cut(s)	290, 894, 983
MaeI	CTAG	2 cut(s)	677, 740
MaeIII	GTNAC	4 cut(s)	37, 334, 748, 757
MalI	GATC	4 cut(s)	203, 256, 359, 485
MboI	GATC	4 cut(s)	201, 254, 357, 483
MboII	GAAGA	9 cut(s)	78, 174, 226, 267, 352, 382, 707, 1120, 1243
MflI	RGATCY	2 cut(s)	201, 254
MhlI	GDGCHC	1 cut(s)	369
MluCI	AATT	4 cut(s)	766, 871, 894, 1255
MmeI	TCCRAC	1 cut(s)	1075
MroXI	GAANNNNTTC	1 cut(s)	530
MseI	TTAA	2 cut(s)	852, 1167
MslI	CAYNNNNRTG	1 cut(s)	433
MspA1I	CMGCKG	1 cut(s)	1184
MspI	CCGG	1 cut(s)	465
MspR9I	CCNGG	1 cut(s)	466
MwoI	GCNNNNNNNGC	5 cut(s)	278, 287, 350, 783, 846
NciI	CCSGG	1 cut(s)	466
NcoI	CCATGG	2 cut(s)	205, 434
NdeII	GATC	4 cut(s)	201, 254, 357, 483
NlaIII	CATG	4 cut(s)	209, 438, 513, 629
NlaIV	GGNNCC	4 cut(s)	469, 645, 987, 1180
NmeAIII	GCCGAG	1 cut(s)	563
NmuCI	GTSAC	3 cut(s)	37, 334, 757
NspV	TTCGAA	1 cut(s)	830
PceI	AGGCCT	1 cut(s)	777
PdmI	GAANNNNTTC	1 cut(s)	530
PfeI	GAWTC	5 cut(s)	13, 105, 156, 177, 712
PkrI	GCNGC	1 cut(s)	745
PspFI	CCCAGC	1 cut(s)	345
PspN4I	GGNNCC	4 cut(s)	469, 645, 987, 1180
PspPI	GGNCC	3 cut(s)	468, 551, 1179
PsuI	RGATCY	2 cut(s)	201, 254
RsaI	GTAC	1 cut(s)	374
RsaNI	GTAC	1 cut(s)	373
RseI	CAYNNNNRTG	1 cut(s)	433
SaqAI	TTAA	2 cut(s)	852, 1167
SatI	GCNGC	1 cut(s)	744
Sau3AI	GATC	4 cut(s)	201, 254, 357, 483
Sau96I	GGNCC	3 cut(s)	468, 551, 1179
ScrFI	CCNGG	1 cut(s)	466
SduI	GDGCHC	1 cut(s)	369
SfaNI	GCATC	3 cut(s)	290, 894, 983
SfcI	CTRYAG	1 cut(s)	969
SfuI	TTCGAA	1 cut(s)	830
SinI	GGWCC	2 cut(s)	468, 1179
SmiMI	CAYNNNNRTG	1 cut(s)	433
Sse9I	AATT	4 cut(s)	766, 871, 894, 1255
SseBI	AGGCCT	1 cut(s)	777
SsiI	CCGC	4 cut(s)	342, 641, 923, 1182
SspMI	CTAG	2 cut(s)	677, 740
StuI	AGGCCT	1 cut(s)	777
StyD4I	CCNGG	1 cut(s)	464
StyI	CCWWGG	4 cut(s)	205, 434, 547, 676
TaaI	ACNGT	5 cut(s)	23, 37, 319, 531, 1135
TaqI	TCGA	4 cut(s)	524, 710, 830, 1049
TasI	AATT	4 cut(s)	766, 871, 894, 1255
TfiI	GAWTC	5 cut(s)	13, 105, 156, 177, 712
Tru1I	TTAA	2 cut(s)	852, 1167
Tru9I	TTAA	2 cut(s)	852, 1167
TscAI	CASTG	1 cut(s)	40
TseFI	GTSAC	3 cut(s)	37, 334, 757
TseI	GCWGC	1 cut(s)	743
Tsp45I	GTSAC	3 cut(s)	37, 334, 757
TspDTI	ATGAA	2 cut(s)	523, 1121
TspGWI	ACGGA	2 cut(s)	460, 850
TspRI	CASTG	1 cut(s)	40
VpaK11BI	GGWCC	2 cut(s)	468, 1179
XapI	RAATTY	1 cut(s)	871
XmaJI	CCTAGG	1 cut(s)	676
XmiI	GTMKAC	1 cut(s)	1130
XmnI	GAANNNNTTC	1 cut(s)	530
XspI	CTAG	2 cut(s)	677, 740

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.