AT5G20040

Belongs to the IPP transferase family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Reverse (-)
6767701 .. 6771190
3490 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G20040.2

Sequence Viewer

Length: 1392 bp
ATGGTGATTGGCAGTGGCGTATTTTTGACCCGTACCTGTTACTTGAGACTTCAACCGCCAAGCCTTGTACTGCGCCGGAGATTCTGCGCAGCCACCACGGCCTGCTCTGTTCCTCTGAACGGGAACAAGAAGAAAAAGTCTGAAAAGGAGAAGGTGATTGTGATTTCTGGGCCCACCGGCGCAGGAAAGAGCAGACTTGCCATGGAGCTCGCTAAGCGACTCAATGGCGAAATCATCAGTGCTGACTCCGTTCAGGTGTATAAAGGCCTTGATGTTGGATCAGCCAAGCCATCAGATAGCGATAGAAAGGTGGTGCCTCATCATCTTATCGACATTTTGCATCCGTCTCAAGACTACTCTGTGGGGCAATTTTATGATGATGGAAGGCAAGCTACCAAAGATATTCTTAATAGAGGGCGTGTTCCCATTGTTACGGGTGGAACTGGATTGTATCTGCGATGGTTTATGTATGGGAAGCCGGATGTGCCTAAACCTTCTCCAGAAGTTATCGCTGAGGCCCATGATATGCTAGTTGGTTTTCAAACCGAATATAACTGGGACGCAGCTGTGGAGTTGGTGGTCAATGCTGGTGATCCAAAAGCTTCTTCTTTACCTCGTAATGATTGGTACAGACTACGCCGTAGCCTCGAGATACTCAAGTCAACTGGATCGCCTCCGTCTTCCTTTCGCATTCCTTATGATTCCTTTCGAGTAAATTTAGTTGCTCCTGATGCTGATGACTTCCTTGAGGACGGTTCATCTGCCGATATCTCTATCCAAAACATAGAGACAGATTTGGACTATGACTTTCTTTGTTTTTTCTTGTCAAGCCCACGGGTTGCTCTCTACAGATCTATTGATTTCAGATGTGAAGACATGCTTTCAGGACCCAATGGAGTTTTGTCAGAAGCTAGATGGCTTCTTGATCTTGGTCTTCTTCCAAACTCAAATCCTGCAACTCGTGCCATTGGGTACAGACAGGCCATGGAATATCTATTACAATGTCGTCGATATGAGGGCGAAAGTTCCCCTAGAGAATTTTATGCTTTCTTGAACAAATTTCAGACAGCATCCAGAAACTTTGCAAAAAGGCAAATGACATGGTTCCGGTGTGAGCCTATGTACCACTGGCTCAATGCTTCCAAACCTCTGGATTCAATACTTCAATGCATATACGATGCTTATGAGAGCGAAGCAGAGATGGTGGAGATACCGGAGTCTCTAAGAATGAGCAAAGACGTAAGAGATTCTCGAGAAGCTTCTGAACTAAAGGGGTATCGCTCCAAAAACAGGCATTTCGTAAGACGAGAGGACTGTTCTTCGGTGTTAGAATGGATCAGGAGTGAAGGATGTAAGAGTGAAGCTTCATGCGTGGAAAGCGCAATAGCATAA

Protein Analysis

463

Amino Acids

52.26

Weight (kDa)

7.0

Isoelectric Point (pI)

55.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IPT PF01745 51 - 101 1.4e-07 Isopentenyl transferase
IPPT PF01715 85 - 370 5.7e-59 IPP transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 88
AccB1I GGYRCC 1 cut(s) 313
AciI CCGC 1 cut(s) 56
AclWI GGATC 4 cut(s) 286, 587, 676, 1343
AcsI RAATTY 3 cut(s) 715, 1037, 1058
AfaI GTAC 5 cut(s) 34, 69, 629, 974, 1124
AfiI CCNNNNNNNGG 2 cut(s) 119, 1290
AgsI TTSAA 5 cut(s) 53, 542, 1054, 1158, 1166
AjuI GAANNNNNNNTTGG 2 cut(s) 589, 621
AluBI AGCT 7 cut(s) 208, 392, 566, 602, 911, 1259, 1364
AluI AGCT 7 cut(s) 208, 392, 566, 602, 911, 1259, 1364
Alw21I GWGCWC 1 cut(s) 210
Alw26I GTCTC 4 cut(s) 40, 351, 782, 1224
AlwI GGATC 4 cut(s) 286, 587, 676, 1343
Ama87I CYCGRG 2 cut(s) 647, 1251
AoxI GGCC 5 cut(s) 99, 170, 265, 516, 981
ApaI GGGCCC 1 cut(s) 174
ApeKI GCWGC 2 cut(s) 89, 563
ApoI RAATTY 3 cut(s) 715, 1037, 1058
AspLEI GCGC 4 cut(s) 75, 89, 182, 1382
AspS9I GGNCC 4 cut(s) 170, 171, 517, 887
AsuHPI GGTGA 3 cut(s) 16, 166, 602
AvaI CYCGRG 2 cut(s) 647, 1251
AvaII GGWCC 1 cut(s) 887
BaeGI GKGCMC 1 cut(s) 174
BaeI ACNNNNGTAYC 4 cut(s) 644, 677, 1202, 1235
BanI GGYRCC 1 cut(s) 313
BanII GRGCYC 2 cut(s) 174, 210
BarI GAAGNNNNNNTAC 2 cut(s) 376, 408
BauI CACGAG 1 cut(s) 960
BbsI GAAGAC 3 cut(s) 672, 879, 926
Bbv12I GWGCWC 1 cut(s) 210
BbvCI CCTCAGC 1 cut(s) 513
BbvI GCAGC 2 cut(s) 101, 575
BccI CCATC 5 cut(s) 298, 374, 453, 909, 1195
BceAI ACGGC 2 cut(s) 114, 624
BcoDI GTCTC 4 cut(s) 40, 351, 782, 1224
BfaI CTAG 3 cut(s) 530, 912, 1032
BfmI CTRYAG 1 cut(s) 847
BglI GCCNNNNNGGC 1 cut(s) 98
BglII AGATCT 1 cut(s) 851
BisI GCNGC 2 cut(s) 90, 564
BlpI GCTNAGC 1 cut(s) 213
BlsI GCNGC 2 cut(s) 91, 565
Bme18I GGWCC 1 cut(s) 887
BmeT110I CYCGRG 2 cut(s) 647, 1251
BmgT120I GGNCC 4 cut(s) 170, 171, 517, 887
BmiI GGNNCC 4 cut(s) 172, 315, 889, 1106
BmrI ACTGGG 1 cut(s) 565
BmsI GCATC 4 cut(s) 349, 721, 1079, 1168
BmuI ACTGGG 1 cut(s) 565
BpiI GAAGAC 3 cut(s) 672, 879, 926
BpmI CTGGAG 1 cut(s) 483
Bpu10I CCTNAGC 1 cut(s) 513
Bpu1102I GCTNAGC 1 cut(s) 213
BpuEI CTTGAG 4 cut(s) 64, 333, 641, 767
BsaJI CCNNGG 4 cut(s) 96, 201, 833, 984
BsaWI WCCGGW 2 cut(s) 1107, 1213
Bsc4I CCNNNNNNNGG 2 cut(s) 119, 1290
Bse118I RCCGGY 1 cut(s) 176
Bse1I ACTGG 4 cut(s) 448, 560, 670, 1133
BseDI CCNNGG 4 cut(s) 96, 201, 833, 984
BseGI GGATG 4 cut(s) 340, 487, 1070, 1355
BseLI CCNNNNNNNGG 2 cut(s) 119, 1290
BseMII CTCAG 1 cut(s) 504
BseNI ACTGG 4 cut(s) 448, 560, 670, 1133
BseSI GKGCMC 1 cut(s) 174
BseXI GCAGC 2 cut(s) 101, 575
BshFI GGCC 5 cut(s) 101, 172, 267, 518, 983
BshNI GGYRCC 1 cut(s) 313
BsiHKAI GWGCWC 1 cut(s) 210
BsiHKCI CYCGRG 2 cut(s) 647, 1251
BsiSI CCGG 5 cut(s) 76, 177, 479, 1108, 1214
BslFI GGGAC 1 cut(s) 572
BslI CCNNNNNNNGG 2 cut(s) 119, 1290
BsmAI GTCTC 4 cut(s) 40, 351, 782, 1224
BsmBI CGTCTC 1 cut(s) 351
BsmFI GGGAC 1 cut(s) 572
BsmI GAATGC 1 cut(s) 690
BsnI GGCC 5 cut(s) 101, 172, 267, 518, 983
BsoBI CYCGRG 2 cut(s) 647, 1251
Bsp120I GGGCCC 1 cut(s) 170
Bsp1286I GDGCHC 2 cut(s) 174, 210
Bsp143I GATC 6 cut(s) 278, 592, 668, 851, 925, 1335
Bsp1720I GCTNAGC 1 cut(s) 213
Bsp19I CCATGG 2 cut(s) 201, 984
BspACI CCGC 1 cut(s) 56
BspANI GGCC 5 cut(s) 101, 172, 267, 518, 983
BspCNI CTCAG 1 cut(s) 505
BspLI GGNNCC 4 cut(s) 172, 315, 889, 1106
BspPI GGATC 4 cut(s) 286, 587, 676, 1343
BspT107I GGYRCC 1 cut(s) 313
BsrFI RCCGGY 1 cut(s) 176
BsrI ACTGG 4 cut(s) 448, 560, 670, 1133
BssAI RCCGGY 1 cut(s) 176
BssECI CCNNGG 4 cut(s) 96, 201, 833, 984
BssMI GATC 6 cut(s) 278, 592, 668, 851, 925, 1335
BssSI CACGAG 1 cut(s) 960
BssT1I CCWWGG 2 cut(s) 201, 984
Bst2BI CACGAG 1 cut(s) 960
Bst4CI ACNGT 2 cut(s) 755, 1316
BstAPI GCANNNNNTGC 1 cut(s) 962
BstC8I GCNNGC 3 cut(s) 103, 210, 390
BstDEI CTNAG 3 cut(s) 213, 513, 1223
BstDSI CCRYGG 4 cut(s) 96, 201, 833, 984
BstF5I GGATG 4 cut(s) 340, 487, 1070, 1355
BstHHI GCGC 4 cut(s) 75, 89, 182, 1382
BstKTI GATC 6 cut(s) 281, 595, 671, 854, 928, 1338
BstMAI GTCTC 4 cut(s) 40, 351, 782, 1224
BstMBI GATC 6 cut(s) 278, 592, 668, 851, 925, 1335
BstMWI GCNNNNNNNGC 6 cut(s) 98, 214, 484, 731, 962, 1377
BstNSI RCATGY 1 cut(s) 880
BstSFI CTRYAG 1 cut(s) 847
BstSLI GKGCMC 1 cut(s) 174
BstV1I GCAGC 2 cut(s) 101, 575
BstV2I GAAGAC 3 cut(s) 672, 879, 926
BstX2I RGATCY 1 cut(s) 851
BstXI CCANNNNNNTGG 1 cut(s) 1150
BstYI RGATCY 1 cut(s) 851
BsuRI GGCC 5 cut(s) 101, 172, 267, 518, 983
BtgI CCRYGG 4 cut(s) 96, 201, 833, 984
BtgZI GCGATG 1 cut(s) 472
BtsCI GGATG 4 cut(s) 340, 487, 1070, 1355
BtsI GCAGTG 1 cut(s) 19
BtsIMutI CAGTG 3 cut(s) 19, 244, 1126
Cac8I GCNNGC 3 cut(s) 103, 210, 390
CfoI GCGC 4 cut(s) 75, 89, 182, 1382
Cfr10I RCCGGY 1 cut(s) 176
Cfr13I GGNCC 4 cut(s) 170, 171, 517, 887
CseI GACGC 1 cut(s) 569
Csp6I GTAC 5 cut(s) 33, 68, 628, 973, 1123
CviAII CATG 6 cut(s) 202, 521, 877, 985, 1101, 1368
CviQI GTAC 5 cut(s) 33, 68, 628, 973, 1123
DdeI CTNAG 3 cut(s) 213, 513, 1223
DpnI GATC 6 cut(s) 280, 594, 670, 853, 927, 1337
DpnII GATC 6 cut(s) 278, 592, 668, 851, 925, 1335
Ecl136II GAGCTC 1 cut(s) 208
Eco130I CCWWGG 2 cut(s) 201, 984
Eco147I AGGCCT 1 cut(s) 267
Eco24I GRGCYC 2 cut(s) 174, 210
Eco32I GATATC 1 cut(s) 769
Eco47I GGWCC 1 cut(s) 887
Eco53kI GAGCTC 1 cut(s) 208
Eco88I CYCGRG 2 cut(s) 647, 1251
EcoICRI GAGCTC 1 cut(s) 208
EcoO109I RGGNCCY 1 cut(s) 887
EcoRV GATATC 1 cut(s) 769
EcoT14I CCWWGG 2 cut(s) 201, 984
EcoT22I ATGCAT 1 cut(s) 1172
EcoT38I GRGCYC 2 cut(s) 174, 210
ErhI CCWWGG 2 cut(s) 201, 984
Esp3I CGTCTC 1 cut(s) 351
FaeI CATG 6 cut(s) 205, 524, 880, 988, 1104, 1371
FalI AAGNNNNNCTT 4 cut(s) 390, 422, 864, 896
FaqI GGGAC 1 cut(s) 572
FatI CATG 6 cut(s) 201, 520, 876, 984, 1100, 1367
Fnu4HI GCNGC 2 cut(s) 90, 564
FokI GGATG 4 cut(s) 327, 494, 1057, 1362
FriOI GRGCYC 2 cut(s) 174, 210
Fsp4HI GCNGC 2 cut(s) 90, 564
FspBI CTAG 3 cut(s) 530, 912, 1032
FspI TGCGCA 1 cut(s) 88
GlaI GCGC 4 cut(s) 74, 88, 181, 1381
GluI GCNGC 2 cut(s) 90, 564
GsuI CTGGAG 1 cut(s) 483
HaeIII GGCC 5 cut(s) 101, 172, 267, 518, 983
HapII CCGG 5 cut(s) 76, 177, 479, 1108, 1214
HgaI GACGC 1 cut(s) 569
HhaI GCGC 4 cut(s) 75, 89, 182, 1382
Hin1II CATG 6 cut(s) 205, 524, 880, 988, 1104, 1371
Hin6I GCGC 4 cut(s) 73, 87, 180, 1380
HinP1I GCGC 4 cut(s) 73, 87, 180, 1380
HincII GTYRAC 1 cut(s) 663
HindII GTYRAC 1 cut(s) 663
HindIII AAGCTT 3 cut(s) 600, 1257, 1362
HinfI GANTC 7 cut(s) 81, 219, 245, 701, 1154, 1217, 1247
HpaII CCGG 5 cut(s) 76, 177, 479, 1108, 1214
HphI GGTGA 3 cut(s) 16, 166, 602
Hpy166II GTNNAC 1 cut(s) 663
Hpy188I TCNGA 7 cut(s) 117, 142, 295, 866, 907, 1065, 1264
Hpy8I GTNNAC 1 cut(s) 663
Hpy99I CGWCG 1 cut(s) 1011
HpyAV CCTTC 4 cut(s) 145, 378, 504, 1340
HpyCH4III ACNGT 2 cut(s) 755, 1316
HpyCH4IV ACGT 1 cut(s) 1239
HpyCH4V TGCA 4 cut(s) 340, 956, 1085, 1170
HpyF10VI GCNNNNNNNGC 6 cut(s) 98, 214, 484, 731, 962, 1377
HpyF3I CTNAG 3 cut(s) 213, 513, 1223
HpySE526I ACGT 1 cut(s) 1239
Hsp92II CATG 6 cut(s) 205, 524, 880, 988, 1104, 1371
HspAI GCGC 4 cut(s) 73, 87, 180, 1380
Kzo9I GATC 6 cut(s) 278, 592, 668, 851, 925, 1335
LmnI GCTCC 3 cut(s) 205, 730, 1286
Lsp1109I GCAGC 2 cut(s) 101, 575
LweI GCATC 4 cut(s) 349, 721, 1079, 1168
MaeI CTAG 3 cut(s) 530, 912, 1032
MaeII ACGT 1 cut(s) 1239
MaeIII GTNAC 2 cut(s) 38, 430
MalI GATC 6 cut(s) 280, 594, 670, 853, 927, 1337
MboI GATC 6 cut(s) 278, 592, 668, 851, 925, 1335
MboII GAAGA 7 cut(s) 142, 597, 672, 884, 926, 929, 1311
MflI RGATCY 1 cut(s) 851
MhlI GDGCHC 2 cut(s) 174, 210
MluCI AATT 4 cut(s) 368, 715, 1037, 1058
MlyI GAGTC 3 cut(s) 213, 239, 1226
MmeI TCCRAC 1 cut(s) 256
Mph1103I ATGCAT 1 cut(s) 1172
MseI TTAA 1 cut(s) 408
MspA1I CMGCKG 1 cut(s) 566
MspI CCGG 5 cut(s) 76, 177, 479, 1108, 1214
Mva1269I GAATGC 1 cut(s) 690
MwoI GCNNNNNNNGC 6 cut(s) 98, 214, 484, 731, 962, 1377
NcoI CCATGG 2 cut(s) 201, 984
NdeII GATC 6 cut(s) 278, 592, 668, 851, 925, 1335
NlaIII CATG 6 cut(s) 205, 524, 880, 988, 1104, 1371
NlaIV GGNNCC 4 cut(s) 172, 315, 889, 1106
NsbI TGCGCA 1 cut(s) 88
NsiI ATGCAT 1 cut(s) 1172
NspI RCATGY 1 cut(s) 880
PaeR7I CTCGAG 2 cut(s) 647, 1251
PceI AGGCCT 1 cut(s) 267
PctI GAATGC 1 cut(s) 690
PfeI GAWTC 4 cut(s) 81, 701, 1154, 1247
PkrI GCNGC 2 cut(s) 91, 565
PleI GAGTC 3 cut(s) 213, 239, 1225
PpsI GAGTC 3 cut(s) 213, 239, 1225
PpuMI RGGWCCY 1 cut(s) 887
Psp124BI GAGCTC 1 cut(s) 210
Psp5II RGGWCCY 1 cut(s) 887
PspN4I GGNNCC 4 cut(s) 172, 315, 889, 1106
PspOMI GGGCCC 1 cut(s) 170
PspPI GGNCC 4 cut(s) 170, 171, 517, 887
PspPPI RGGWCCY 1 cut(s) 887
PsuI RGATCY 1 cut(s) 851
PvuII CAGCTG 1 cut(s) 566
RsaI GTAC 5 cut(s) 34, 69, 629, 974, 1124
RsaNI GTAC 5 cut(s) 33, 68, 628, 973, 1123
SacI GAGCTC 1 cut(s) 210
SaqAI TTAA 1 cut(s) 408
SatI GCNGC 2 cut(s) 90, 564
Sau3AI GATC 6 cut(s) 278, 592, 668, 851, 925, 1335
Sau96I GGNCC 4 cut(s) 170, 171, 517, 887
SchI GAGTC 3 cut(s) 213, 239, 1226
SduI GDGCHC 2 cut(s) 174, 210
SfaNI GCATC 4 cut(s) 349, 721, 1079, 1168
SfcI CTRYAG 1 cut(s) 847
Sfr274I CTCGAG 2 cut(s) 647, 1251
SgrAI CRCCGGYG 1 cut(s) 176
SinI GGWCC 1 cut(s) 887
SlaI CTCGAG 2 cut(s) 647, 1251
SmlI CTYRAG 6 cut(s) 43, 348, 647, 656, 746, 1251
SmoI CTYRAG 6 cut(s) 43, 348, 647, 656, 746, 1251
Sse9I AATT 4 cut(s) 368, 715, 1037, 1058
SseBI AGGCCT 1 cut(s) 267
SsiI CCGC 1 cut(s) 56
SspMI CTAG 3 cut(s) 530, 912, 1032
SstI GAGCTC 1 cut(s) 210
StuI AGGCCT 1 cut(s) 267
StyI CCWWGG 2 cut(s) 201, 984
TaaI ACNGT 2 cut(s) 755, 1316
TaiI ACGT 1 cut(s) 1242
TaqI TCGA 5 cut(s) 330, 648, 709, 1009, 1252
TasI AATT 4 cut(s) 368, 715, 1037, 1058
TatI WGTACW 1 cut(s) 67
TfiI GAWTC 4 cut(s) 81, 701, 1154, 1247
Tru1I TTAA 1 cut(s) 408
Tru9I TTAA 1 cut(s) 408
TscAI CASTG 3 cut(s) 19, 244, 1133
TseI GCWGC 2 cut(s) 89, 563
TspDTI ATGAA 2 cut(s) 747, 1356
TspGWI ACGGA 3 cut(s) 238, 333, 666
TspRI CASTG 3 cut(s) 19, 244, 1133
VpaK11BI GGWCC 1 cut(s) 887
XapI RAATTY 3 cut(s) 715, 1037, 1058
XceI RCATGY 1 cut(s) 880
XhoI CTCGAG 2 cut(s) 647, 1251
XspI CTAG 3 cut(s) 530, 912, 1032
Zsp2I ATGCAT 1 cut(s) 1172
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.