Rh4AG212400

Belongs to the IPP transferase family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
Physical Location & Seq
Reverse (-)
50592248 .. 50593330
1083 bp
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UTR
Exon/CDS
Intron
Rh4AG212400.1

Sequence Viewer

Length: 231 bp
ATGTATGGGCATCTGGAATTGTTAAATTATGCTCATGATACTGTTCTAAACTTTATTTGTGATGCATACCATGACAACAGTGGAAATTGGGTTGTGCCTGAATCACTGCAAATGAAGAAAGAATTGTCAAGCCGCCGAGAAGTGTCTGAGCTAAAGAGCAACCGAACTAAGAACAGGCTCCAGCTTACTGCAGCTTTTATGTTGAGTCCTATCATTCTTTTCTTGAGATGA

Protein Analysis

76

Amino Acids

8.87

Weight (kDa)

7.93

Isoelectric Point (pI)

51.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 133
AluBI AGCT 3 cut(s) 151, 184, 194
AluI AGCT 3 cut(s) 151, 184, 194
ApeKI GCWGC 1 cut(s) 191
BbvI GCAGC 1 cut(s) 203
BfmI CTRYAG 1 cut(s) 189
BisI GCNGC 2 cut(s) 133, 192
BlsI GCNGC 2 cut(s) 134, 193
BmiI GGNNCC 1 cut(s) 179
BmsI GCATC 2 cut(s) 19, 52
BpmI CTGGAG 1 cut(s) 164
BseMII CTCAG 1 cut(s) 138
BseXI GCAGC 1 cut(s) 203
BspACI CCGC 1 cut(s) 133
BspCNI CTCAG 1 cut(s) 139
BspHI TCATGA 1 cut(s) 34
BspLI GGNNCC 1 cut(s) 179
BspMAI CTGCAG 1 cut(s) 193
Bst4CI ACNGT 2 cut(s) 43, 80
BstDEI CTNAG 2 cut(s) 147, 168
BstSFI CTRYAG 1 cut(s) 189
BstV1I GCAGC 1 cut(s) 203
BtsI GCAGTG 1 cut(s) 104
BtsIMutI CAGTG 2 cut(s) 85, 104
CciI TCATGA 1 cut(s) 34
CviAII CATG 2 cut(s) 35, 71
CviJI RGCY 5 cut(s) 132, 151, 178, 184, 194
CviKI_1 RGCY 5 cut(s) 132, 151, 178, 184, 194
DdeI CTNAG 2 cut(s) 147, 168
EcoT22I ATGCAT 1 cut(s) 67
FaeI CATG 2 cut(s) 38, 74
FaiI YATR 6 cut(s) 6, 30, 36, 67, 72, 200
FatI CATG 2 cut(s) 34, 70
Fnu4HI GCNGC 2 cut(s) 133, 192
Fsp4HI GCNGC 2 cut(s) 133, 192
GluI GCNGC 2 cut(s) 133, 192
GsuI CTGGAG 1 cut(s) 164
Hin1II CATG 2 cut(s) 38, 74
HinfI GANTC 2 cut(s) 101, 205
Hpy188I TCNGA 1 cut(s) 148
Hpy188III TCNNGA 3 cut(s) 14, 35, 223
HpyCH4III ACNGT 2 cut(s) 43, 80
HpyCH4V TGCA 3 cut(s) 65, 109, 191
HpyF3I CTNAG 2 cut(s) 147, 168
Hsp92II CATG 2 cut(s) 38, 74
LmnI GCTCC 1 cut(s) 183
LpnPI CCDG 3 cut(s) 111, 160, 194
Lsp1109I GCAGC 1 cut(s) 203
LweI GCATC 2 cut(s) 19, 52
MboII GAAGA 1 cut(s) 127
MluCI AATT 4 cut(s) 17, 25, 85, 122
MlyI GAGTC 1 cut(s) 214
Mph1103I ATGCAT 1 cut(s) 67
MseI TTAA 1 cut(s) 23
NlaIII CATG 2 cut(s) 38, 74
NlaIV GGNNCC 1 cut(s) 179
NmeAIII GCCGAG 1 cut(s) 161
NsiI ATGCAT 1 cut(s) 67
PagI TCATGA 1 cut(s) 34
PfeI GAWTC 1 cut(s) 101
PkrI GCNGC 2 cut(s) 134, 193
PleI GAGTC 1 cut(s) 213
PpsI GAGTC 1 cut(s) 213
PspN4I GGNNCC 1 cut(s) 179
PstI CTGCAG 1 cut(s) 193
SaqAI TTAA 1 cut(s) 23
SatI GCNGC 2 cut(s) 133, 192
SchI GAGTC 1 cut(s) 214
SetI ASST 3 cut(s) 153, 186, 196
SfaNI GCATC 2 cut(s) 19, 52
SfcI CTRYAG 1 cut(s) 189
SgeI CNNG 8 cut(s) 26, 47, 83, 110, 141, 149, 187, 193
SmlI CTYRAG 1 cut(s) 223
SmoI CTYRAG 1 cut(s) 223
Sse9I AATT 4 cut(s) 17, 25, 85, 122
SsiI CCGC 1 cut(s) 133
TaaI ACNGT 2 cut(s) 43, 80
TasI AATT 4 cut(s) 17, 25, 85, 122
TauI GCSGC 1 cut(s) 135
TfiI GAWTC 1 cut(s) 101
Tru1I TTAA 1 cut(s) 23
Tru9I TTAA 1 cut(s) 23
TscAI CASTG 2 cut(s) 85, 111
TseI GCWGC 1 cut(s) 191
TspDTI ATGAA 1 cut(s) 128
TspRI CASTG 2 cut(s) 85, 111
XcmI CCANNNNNNNNNTGG 1 cut(s) 77
Zsp2I ATGCAT 1 cut(s) 67
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.